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* Merge from developAllen Byrne2018-07-3112-60/+89
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* Merge pull request #1162 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2018-07-302-1/+7
|\ | | | | | | | | | | | | | | hdf5_1_10 * commit 'e2423982a1e85e8f51ad71808d21fb9185595a27': HDFFV-10534 add note HDFFV-10534 change to runtime exception
| * HDFFV-10534 add noteAllen Byrne2018-07-301-0/+6
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| * HDFFV-10534 change to runtime exceptionAllen Byrne2018-07-301-1/+1
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* Merge pull request #1156 in HDFFV/hdf5 from hdf5_1_10.sync to hdf5_1_10Scot Breitenfeld2018-07-27179-36937/+32013
|\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'ed1bfe373316567b57ddf2199853db815fff6b4b': (51 commits) Revise H5D__mpio_array_gatherv() to not allocate memory needlessly Add test to continually grow and shrink chunks Changes to test with checksum filter as well as deflate filter Eliminate warning about signed to unsigned conversion Remove unused local variable Fix bug in parallel reads of compressed data Add data verification to parallel filtered compound write tests Add seven of fourteen parallel filtered data partial read tests Add missing file and remove deleted Correct git synch error Add swmr tests, fix java script Update macros and cygwin flags Revert Sencode h5dump test RELEASE.txt updates for HDFFV-10467 and HDFFV-10509 Update HDF5 examples to correct version. Correct a few typos. Correct typo in comment in config/gnu-flags. Update bine/release to create batch scripts and build-unix-sh, and to put files in a subdirectory. Add missing '\' in the middle of the public headers list in Makefile.am. Fixed typos ...
| * Revise H5D__mpio_array_gatherv() to not allocate memory needlesslyJordan Henderson2018-07-271-38/+61
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| * Add test to continually grow and shrink chunksJordan Henderson2018-07-272-0/+149
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| * Changes to test with checksum filter as well as deflate filterJordan Henderson2018-07-272-35/+92
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| * Eliminate warning about signed to unsigned conversionJordan Henderson2018-07-271-4/+4
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| * Remove unused local variableJordan Henderson2018-07-271-7/+4
| | | | | | Ensure frees are done in a more heap-fragmentation friendly order
| * Fix bug in parallel reads of compressed dataJordan Henderson2018-07-273-16/+954
| | | | | | Add remaining parallel compound dataset partial read tests
| * Add data verification to parallel filtered compound write testsJordan Henderson2018-07-272-354/+1128
| | | | | | Add 3D parallel filtered partial read tests
| * Add seven of fourteen parallel filtered data partial read testsJordan Henderson2018-07-272-668/+2394
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| * Merge pull request #1155 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10.sync to ↵Allen Byrne2018-07-272-2/+87
| |\ | | | | | | | | | | | | | | | | | | hdf5_1_10.sync * commit '5fce1be6466177903bf4e192e141b416f9c9a73d': Add missing file and remove deleted
| | * Add missing file and remove deletedAllen Byrne2018-07-272-2/+87
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| * Merge pull request #1154 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10.sync to ↵Allen Byrne2018-07-2717-154/+1030
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_10.sync * commit '2c6dadbd132b02ecbe688f48ced3b0703ed1965d': Correct git synch error Add swmr tests, fix java script Update macros and cygwin flags Revert Sencode h5dump test
| | * Correct git synch errorAllen Byrne2018-07-271-1/+1
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| | * Add swmr tests, fix java scriptAllen Byrne2018-07-2711-34/+1012
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| | * Update macros and cygwin flagsAllen Byrne2018-07-274-20/+19
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| | * Revert Sencode h5dump testAllen Byrne2018-07-275-101/+0
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| * RELEASE.txt updates for HDFFV-10467 and HDFFV-10509Jordan Henderson2018-07-271-0/+38
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| * Update HDF5 examples to correct version.Larry Knox2018-07-261-2/+2
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| * Correct a few typos.Larry Knox2018-07-261-3/+3
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| * Correct typo in comment in config/gnu-flags.Larry Knox2018-07-261-1/+1
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| * Update bine/release to create batch scripts and build-unix-sh, and toLarry Knox2018-07-261-41/+38
| | | | | | | | put files in a subdirectory.
| * Add missing '\' in the middle of the public headers list in Makefile.am.Larry Knox2018-07-261-4/+4
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| * Fixed typosBinh-Minh Ribler2018-07-262-13/+13
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| * Entered entries for HDFFV-10150, HDFFV-10458, HDFFV-1047Binh-Minh Ribler2018-07-261-2/+61
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| * Updated for C2Cppfunction_map.htmBinh-Minh Ribler2018-07-261-1/+1
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| * Added class DSetAccPropListBinh-Minh Ribler2018-07-2630-39/+481
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: - Added class DSetAccPropList for the dataset access property list. - Added wrapper for H5Dget_access_plist to class DataSet // Gets the access property list of this dataset. DSetAccPropList getAccessPlist() const; - Added wrappers for H5Pset_chunk_cache and H5Pget_chunk_cache to class DSetAccPropList // Sets the raw data chunk cache parameters. void setChunkCache(size_t rdcc_nslots, size_t rdcc_nbytes, double rdcc_w0) // Retrieves the raw data chunk cache parameters. void getChunkCache(size_t &rdcc_nslots, size_t &rdcc_nbytes, double &rdcc_w0) - Added two more arguments to H5Location::createDataSet: const DSetAccPropList& dapl = DSetAccPropList::DEFAULT const LinkCreatPropList& lcpl = LinkCreatPropList::DEFAULT - Added one more argument to H5Location::openDataSet: const DSetAccPropList& dapl = DSetAccPropList::DEFAULT Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| * Code improvementBinh-Minh Ribler2018-07-2610-203/+176
| | | | | | | | | | | | | | | | | | | | | | Description: Moved the new H5Object::getInfo member functions to H5Location and made them overloaded with the existing H5Location::getObjinfo. This way is cleaner than the previous approach. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| * Fix for HDFFV-9277: update the ainfo message after removing an attribute.Vailin Choi2018-07-263-3/+110
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| * Add cmakehdf5 command line option to turn on shell script testing.Larry Knox2018-07-261-1/+9
| | | | | | | | Option is on by default but can be disabled with --disable-shell-testing.
| * Apply Cygwin pathches from Marco Atzeri.Larry Knox2018-07-265-24/+27
| | | | | | | | Commit Joe Lee's typo corrections for src/H5MF.c.
| * Fixed EED-319Binh-Minh Ribler2018-07-265-35298/+24282
| | | | | | | | | | | | | | | | | | Description: - Fixed doc issue Added an html version for the C++ function mapping table and removed the single web page version. Updated cpp_doc_config to use the html file. - Added a couple more minor tests
| * Fixed HDFFV-10472Binh-Minh Ribler2018-07-263-0/+98
| | | | | | | | | | | | | | | | | | | | Description: Added operator!= to DataType bool operator!=(const DataType& compared_type) Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| * Fixed HDFFV-10458 partiallyBinh-Minh Ribler2018-07-264-9/+163
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Added wrappers for H5Oget_info_by_idx2. // Returns information about an HDF5 object, given its index. void getInfo(const char* grp_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t idx, H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) void getInfo(const H5std_string& grp_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t idx, H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| * Fixed commentsBinh-Minh Ribler2018-07-262-6/+14
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| * Fixed HDFFV-10458 partiallyBinh-Minh Ribler2018-07-266-10/+187
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Added wrappers for H5Oget_info2 and H5Oget_info_by_name2. // Returns information about an HDF5 object. void getInfo(H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC) // Returns information about an HDF5 object, given its name. void getInfo(const char* name, H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) void getInfo(const H5std_string& name, H5O_info_t& objinfo, unsigned fields = H5O_INFO_BASIC, const LinkAccPropList& lapl = LinkAccPropList::DEFAULT) Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| * Removed white spaceBinh-Minh Ribler2018-07-261-1/+2
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| * Fixed HDFFV-10476, HDFFV-10478, HDFFV-10480Binh-Minh Ribler2018-07-263-4/+11
| | | | | | | | | | | | | | | | | | Description: Fixed potential out of bound read and NULL pointer dereferences. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| * Combined macro lines as Dana commentedBinh-Minh Ribler2018-07-263-6/+3
| | | | | | | | | | Platforms tested: Linux/64 (jelly) (very minor)
| * Fix evaluation of __has_attribute(no_sanitize_address) on older GCC versionsJerome Soumagne2018-07-261-3/+7
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| * Fixed division-by-zero issuesBinh-Minh Ribler2018-07-263-24/+39
| | | | | | | | | | | | | | | | | | | | | | Description: Fixed HDFFV-10481 and HDFFV-10477, division by 0. Fixed another occurrence beside what were reported. Also, changed a local variable to avoid an unnecessary cast. Platforms tested: Linux/64 (jelly) Linux/32 (jam) Darwin (osx1010test)
| * Fixed HDFFV-10404Binh-Minh Ribler2018-07-26100-314/+313
| | | | | | | | | | | | | | | | | | Description: Applied the typo fixes from user's report. The previous pull request couldn't be merged because it was too old, and it was too complicated for me to resolve conflicts. Platform tested: Linux/64 (jelly) - very minor
| * Add note about single chunk caching and serial libraryJordan Henderson2018-07-261-1/+7
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| * Add check for actually using the MPI file driver when caching one chunkJordan Henderson2018-07-261-1/+15
| | | | | | Better explain rationale behind chunk caching issue fix
| * Fix error message mentioning wrong MPI function usedJordan Henderson2018-07-261-1/+1
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| * HDFFV-10527:corrected two more typos.Hyo-Kyung Lee2018-07-261-2/+2
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| * HDFFV-10527:corrected typos in comment blocks.Hyo-Kyung Lee2018-07-261-2/+2
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