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* [svn-r26306] Merge r26296 through 26304 from trunk to vds branch.Neil Fortner2015-02-2552-99/+470
|\ | | | | | | | | | | | | It should no longer be necessary to use --enable-using-memchecker make check fails due to an issue with h5ls apparently unrelated to the merge Tested: ummon
| * [svn-r26303] remove files with .clog2 extension generated by MPE when doing ↵Mohamad Chaarawi2015-02-2542-92/+94
| | | | | | | | make clean.
| * [svn-r26302] Description:Quincey Koziol2015-02-259-121/+190
| | | | | | | | | | | | | | | | | | Revise dataspace encode/decode routines to make them work better with future virtual dataset feature. Tested on: Mac OSX/64 10.10.2 (amazon) w/serial (h5committest forthcoming)
| * [svn-r26301] Description:Quincey Koziol2015-02-253-3/+99
| | | | | | | | | | | | | | | | Bring Neil's fix for error in H5S_extent_copy() back to the trunk. Tested on: Mac OSX/64 10.10.2 (amazon) w/serial (h5committest forthcoming)
| * [svn-r26300] Description:Quincey Koziol2015-02-253-0/+272
| | | | | | | | | | | | | | | | | | Add H5Sis_regular_hyperslab() and H5Sget_regular_hyperslab() API routines, along with tests. Tested on: Mac OSX/64 10.10.2 (amazon) w/serial (h5committest forthcoming)
* | [svn-r26297] Changed example and h5dump according to suggestions at today's ↵Elena Pourmal2015-02-255-27/+32
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | code review VDS-176. BNF has been updated too. Now h5dump displays VDS like this: HDF5 "vds.h5" { GROUP "/" { DATASET "VDS" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 4, 6 ) / ( 4, 6 ) } STORAGE_LAYOUT { VIRTUAL { HYPERSLAB { (0,0)-(0,5) }; a.h5; A; ALL; HYPERSLAB { (1,0)-(1,5) }; b.h5; B; ALL; HYPERSLAB { (2,0)-(2,5) }; c.h5; C; ALL; } } } FILTERS { ....... I just commented the code with "EIP" and didn't delete to simplify the review with Allen tomorrow. Tested on jam
* | [svn-r26296] Merge r26050 through 26295 from trunk to vds branch.Neil Fortner2015-02-24215-8766/+2733
|\ \ | |/ | | | | Tested: ummon
| * [svn-r26294] Fix for HDFFV-9132.Scot Breitenfeld2015-02-242-1/+32
| | | | | | | | tested: h5committest
| * [svn-r26280] Removed tab indenting for Fortran source, tab indenting is not ↵Scot Breitenfeld2015-02-232-12/+12
| | | | | | | | F2003 standard compliant.
| * [svn-r26279] re-commit 26260 that Dana moved out fixing the versioning of ↵Mohamad Chaarawi2015-02-2311-45/+363
| | | | | | | | functions to work with v16 default API.
| * [svn-r26277] remove filename extensionAllen Byrne2015-02-231-1/+1
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| * [svn-r26276] Merged r26075-80, 86 from features/autotools_rework branch.Dana Robinson2015-02-238-587/+83
| | | | | | | | | | | | | | | | | | | | | | | | Cleans up time functions in the autotools input files. Removed deprecated gettimeofday() time zone code and configure processing. Also removed some unused time function configure checks and defines. Fixes: HDFFV-9083 and HDFFV-9085 Tested on: 32-bit linux, serial and parallel (jam) OS X (kite) Solaris (emu)
| * [svn-r26275] Merge of r26042, 26083, 26084, 26085 from features/autotools_reworkDana Robinson2015-02-223-105/+94
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - Updated configure.ac so that the direct VFD can now be built without specifying _GNU_SOURCE, etc. on the command line. - The direct VFD is now disabled by default. It was previously enabled, but the configuration script couldn't configure it properly, making it a moot point. Fixes: HDFFV-9057, HDFFV-7567, HDFFV-9088, HDFFV-7566 Tested on: h5committest jam w/ direct VFD (*very* slow!) NOTE: platypus cmake fails, but this is not a new error.
| * [svn-r26272] Merge of r26071 from features/autotools_reworkDana Robinson2015-02-225-75/+6
| | | | | | | | | | | | | | | | | | | | | | | | Removes the --with-default-vfd option from configure. This was basically useless and only allowed selecting the stdio VFD. Since this is a demo VFD and not really a production VFD, we decided to retire this option. Fixes: HDFFV-9081 Tested on: h5committest NOTE: platypus cmake fails, but this is not a new error.
| * [svn-r26271] Reverse merge of r26260 which was causing daily test failures.Dana Robinson2015-02-2212-364/+45
| | | | | | | | Tested on: jam w/ parallel and fortran
| * [svn-r26260] - add an attribute callback to call H5_term_library when ↵Mohamad Chaarawi2015-02-2012-45/+364
| | | | | | | | | | | | | | | | | | MPI_COMM_SELF is destroyed. - add tests for above. - this is a fix for HDFFV-883. tested h5committest
| * [svn-r26259] Remove fileAllen Byrne2015-02-201-321/+0
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| * [svn-r26256] Remove file - obsoleted by cmake 3.1 minimumAllen Byrne2015-02-201-1/+1
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| * [svn-r26255] Remove file - obsoleted by cmake 3.1 minimumAllen Byrne2015-02-201-1/+0
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| * [svn-r26254] Changed mpi test to use include 'mpif.h'Scot Breitenfeld2015-02-201-1/+1
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| * [svn-r26253] Update CMake with fortran source properties and defines, ↵Allen Byrne2015-02-2010-172/+178
| | | | | | | | correct name of hl fortran examples option check
| * [svn-r26249] Removed warnings about NO TRACE from bin/trace script.Dana Robinson2015-02-201-6/+5
| | | | | | | | | | | | Fixes: HDFFV-9098 Tested on: jam (bin/trace only - causes no source changes)
| * [svn-r26247] Reverted back from using 'USE MPI' to include 'mpif.h' since ↵Scot Breitenfeld2015-02-204-4/+5
| | | | | | | | windows does not seem to support 'USE MPI'.
| * [svn-r26246] Corrects a regular expression in the bin/trace Perl script that ↵Dana Robinson2015-02-208-3/+14
| | | | | | | | | | | | | | | | | | | | did not match API calls which return a pointer. Fixes: HDFFV-9141 Tested on: h5committest
| * [svn-r26241] Fixed issue with default 8 byte integers using xlf compilers.Scot Breitenfeld2015-02-194-26/+31
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| * [svn-r26236] Updated the MANIFEST file after deleting VMS support files.Dana Robinson2015-02-191-49/+0
| | | | | | | | Tested on: bin/chkmanifest
| * [svn-r26234] Removed VMS support from the library. A tag ↵Dana Robinson2015-02-1943-4818/+0
| | | | | | | | (vms_last_support_trunk) was created just before the VMS files were deleted.
| * [svn-r26233] Disable h5tenum_insert_f if F2003 is enabled.Scot Breitenfeld2015-02-191-1/+1
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| * [svn-r26230] Add def file comment when it is F2003vms_last_support_trunkAllen Byrne2015-02-191-0/+2
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| * [svn-r26225] Removes broken open() call work-around that was specific to the nowDana Robinson2015-02-196-30/+0
| | | | | | | | | | | | | | | | | | | | unsupported Code Warrior compiler. Also removes the H5_NO_SHARED_WRITING symbol from the pubconf file. Fixes: HDFFV-9080 Tested on: jam only, after bin/reconfigure (all platforms should see no source changes)
| * [svn-r26223] add another H5close before finalize so with-mpe does not fail.Mohamad Chaarawi2015-02-181-1/+4
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| * [svn-r26222] call H5close before MPI_Finalize() and close some objects that ↵Mohamad Chaarawi2015-02-181-1/+8
| | | | | | | | could be potentially left open.
| * [svn-r26219] Merge r26029 from autotools_rework feature branch.Dana Robinson2015-02-182-0/+10
| | | | | | | | | | | | | | | | | | Adds a comment to configure.ac indicating that Cygwin still has problems with srcdir and time. Fixes: HDFFV-9082 Tested on: jam (comment only change) w/ bin/reconfigure
| * [svn-r26217] Added H5T_PROVISIONAL_mp_H5TENUM_INSERT_FScot Breitenfeld2015-02-181-1/+1
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| * [svn-r26216] Removed inappropriate TEXT() macro from the plugin name and ↵Dana Robinson2015-02-181-9/+21
| | | | | | | | | | | | | | | | changed a few Win32 API calls to use the <function>A version, which forces char behavior (vs. wchar_t) when UNICODE is defined. This only affects Windows. Fixes HDFFV-8927 Tested on 64-bit Windows 7 with Visual Studio 2012 and CMake 3.2 with UNICODE/_UNICODE both defined and undefined.
| * [svn-r26214] Fix for HDFFV-8908:Scot Breitenfeld2015-02-187-52/+210
| | | | | | | | h5tenum_insert_f does not work with default 8 byte integers (xlf compiler)
| * [svn-r26213] Description:Quincey Koziol2015-02-183-88/+76
| | | | | | | | | | | | | | | | Minor code cleanups, to align with revise_chunks branch. Tested on: Mac OSX/64 10.10.2 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial
| * [svn-r26211] revert ci 26204Scot Breitenfeld2015-02-187-218/+57
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| * [svn-r26210] Removed debugging statement and typos.Scot Breitenfeld2015-02-182-5/+2
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| * [svn-r26208] Update cmake minimumsAllen Byrne2015-02-1843-44/+44
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| * [svn-r26206] Reverting change r26204Scot Breitenfeld2015-02-181-4/+0
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| * [svn-r26205] Fix for HDFFV-8908:Scot Breitenfeld2015-02-188-57/+225
| | | | | | | | | | h5tenum_insert_f does not work with default 8 byte integers (xlf compiler)
| * [svn-r26203] increase string size to 128 for MPE function event name.Mohamad Chaarawi2015-02-181-1/+1
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| * [svn-r26200] Fixed mixed tabs and spaces before making changes.Dana Robinson2015-02-171-56/+55
| | | | | | | | No code changes.
| * [svn-r26195] Description:Quincey Koziol2015-02-176-13/+14
| | | | | | | | | | | | | | | | | | Switch from enum H5D_CHUNK_BTREE to H5D_CHUNK_IDX_BTREE, along with a couple of minor whitespace touchups. Tested on: Mac OSX/64 10.10.2 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial
| * [svn-r26193] Description:Quincey Koziol2015-02-171-112/+35
| | | | | | | | | | | | | | | | | | | | Fix locking error when splitting root node of v1 B-tree, and simplify the iteration over entries in a v1 B-tree (avoiding using the sibling pointer also). Tested on: Mac OSX/64 10.10.2 (amazon) w/serial & parallel Linux/32 2.6.x (jam) w/serial
| * [svn-r26191] Description:Quincey Koziol2015-02-176-125/+359
| | | | | | | | | | | | | | | | | | Track the min & max keys for a v2 B-tree, so it can more efficiently determine if a key is present in the B-tree. Tested on: Mac OSX/64 10.10.2 (amazon) w/parallel & serial Linux/32 2.6.x (jam) w/serial
| * [svn-r26188] Merged autotools fixes into the trunk:Scot Breitenfeld2015-02-1649-691/+724
| | | | | | | | HDFFV-9089, HDFFV-9091, HDFFV-9092, HDFFV-9094, HDFFV-9095
| * [svn-r26180] merge configure fixes for HDFFV-9068,9069,9096,9097,9135 from ↵Mohamad Chaarawi2015-02-1646-1198/+102
| | | | | | | | | | | | | | | | | | | | | | | | autotools_rework branch: - Remove Infering parallel compilers (C and Fortran) from configure.ac - Remove restriction to build shared with parallel - Cleanup parallel sections in configure.ac - remove large file support checks - MPE fixes. tested with h5committest.
| * [svn-r26177] Snapshot version 1.9 release 214HDF Tester2015-02-1513-26/+26
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