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* Merge pull request #528 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10Allen Byrne2017-05-197-4/+6
|\ | | | | | | | | | | * commit 'a4a1a93e56d282611a800319cef8487a3449ab56': HDFFV-9055 Correct file generator Added note about 9055 and 10128, 9995 not needed
| * HDFFV-9055 Correct file generatorAllen Byrne2017-05-186-3/+3
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| * Added note about 9055 and 10128, 9995 not neededAllen Byrne2017-05-181-1/+3
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* Merge pull request #522 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10Allen Byrne2017-05-1719-416/+468
|\ | | | | | | | | | | | | | | | | | | * commit '8dd40ba371f3a299ed98ab8e7e7f34f967e91d55': Move declaration before executable statement HDFFV-9055 regenerate file for 1.10 HDFFV-9055 add test files HDFFV-9055 Handle H5T_ARRAY types Create variables just for diff_array function Whitespace updates HDFFV-10128 Fixed string length with no null fixed HDFFV-9995 Clarify help text
| * Move declaration before executable statementAllen Byrne2017-05-171-1/+1
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| * HDFFV-9055 regenerate file for 1.10Allen Byrne2017-05-171-0/+0
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| * HDFFV-9055 add test filesAllen Byrne2017-05-176-7/+80
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| * HDFFV-9055 Handle H5T_ARRAY typesAllen Byrne2017-05-171-257/+171
| | | | | | | | | | Create variables just for diff_array function Whitespace updates
| * HDFFV-10128 Fixed string length with no null fixedAllen Byrne2017-05-171-41/+73
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| * HDFFV-9995 Clarify help textAllen Byrne2017-05-1711-111/+144
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* Merge pull request #520 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to ↵Vailin Choi2017-05-162-344/+831
|\ | | | | | | | | | | | | hdf5_1_10 * commit '6403b313d46ec6db46fcff2aaa4a9238f8265d85': Incorporate additional code changes for the H5DOread_chunk patch from GE Heathcare (HDFFV-9934) This is the similar set of changes that was checked in to 1.8 branch: Incorporate the code changes that were missing from the original patch: (1) Additional tests in hl/test/test_dset_opt.c (2) Fix in src/H5Dchunk.c for direct access when an entry is in chunk cache but not dirty Tested on platypus, ostrich, kituo, mayll, osx1010test, moohan, quail, emu.
| * Merge branch 'hdf5_1_10' of ↵Vailin Choi2017-05-161-1/+6
| |\ | |/ |/| | | https://bitbucket.hdfgroup.org/scm/~vchoi/my_hdf5_fork into hdf5_1_10
* | Merge pull request #517 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:hdf5_1_10 to ↵Dana Robinson2017-05-161-1/+6
|\ \ | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit 'b74b1cd250755cbbe6ec337dc34634eb8b74b64a': Added a RELEASE.txt message for HDFFV-10187.
| * | Added a RELEASE.txt message for HDFFV-10187.Dana Robinson2017-05-151-1/+6
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| * Incorporate additional code changes for the H5DOread_chunk patch from GE ↵Vailin Choi2017-05-162-344/+831
|/ | | | | | | | | | Heathcare (HDFFV-9934) This is the similar set of changes that was checked in to 1.8 branch: Incorporate the code changes that were missing from the original patch: (1) Additional tests in hl/test/test_dset_opt.c (2) Fix in src/H5Dchunk.c for direct access when an entry is in chunk cache but not dirty Tested on platypus, ostrich, kituo, mayll, osx1010test, moohan, quail, emu.
* Merge pull request #511 in HDFFV/hdf5 from ↵Dana Robinson2017-05-122-5/+125
|\ | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:h5do_overwrite_1_10 to hdf5_1_10 * commit '1d786206df53942a3a3dbd538b369c94a632050d': Removed redundant assignement. Fixes the chunk overwrite bug (HDFFV-10187) and adds a new H5DO HL test.
| * Removed redundant assignement.Dana Robinson2017-05-121-1/+0
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| * Fixes the chunk overwrite bug (HDFFV-10187) and adds a new H5DO HL test.Dana Robinson2017-05-092-5/+126
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* | Merge pull request #509 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to ↵Vailin Choi2017-05-111-1/+1
|\ \ | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '228939e7315cc9644e158fc246f4908301d77a35': Call to H5Dopen has H5dopen2 arguments at line 12704 of test/dsets.c - changed to H5Dopen2 to fix failure with --with-default-api-version=v16 configure option.
| * | Call to H5Dopen has H5dopen2 arguments at line 12704 of test/dsets.c -lrknox2017-05-111-1/+1
|/ / | | | | | | | | changed to H5Dopen2 to fix failure with --with-default-api-version=v16 configure option.
* | Merge pull request #499 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:hdf5_1_10 to ↵Dana Robinson2017-05-104-7/+2
|\ \ | |/ | | | | | | | | | | hdf5_1_10 * commit '1a4bda1bd824df2da1e8c3441881fb7fca6a4413': Set the HDF5_GENERATE_HEADERS CMake option to default to ON and removed the option from the CMake cache init files.
| * Set the HDF5_GENERATE_HEADERS CMake option to default to ON and removedDana Robinson2017-04-274-7/+2
| | | | | | | | | | | | the option from the CMake cache init files. Fixes HDFFV-10184
* | Merge pull request #500 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to ↵Vailin Choi2017-05-105-9/+173
|\ \ | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit 'd94405ded4451831e4fc90ceff70acbc1e6a8f9c': Fix for HDFFV-10051 Fix missing declaration for H5D__layout_compact_dirty_test(). Tested on mayll and osx1010test. Fix for the two issues reported in HDFFV-10051 Modifications made based on the review comments from pull request #494 Tested on moohan, mayll, kituo, platypus, ostrich, osx1010test, quail, emu. Fix for the two issues reported in HDFFV-10051: (1) Repeated open/close of a compact dataset fails due to the increment of ndims in the dataset structure for every open. --This is done only for chunked dataset via H5D__chunk_set_sizes(). (2) layout "dirty" flag for a compact dataset is not reset properly after flushing the data at dataset close. --Reset the "dirty" flag before flushing the message to the object header via H5O_msg_write(). Tested on moohan, kituo, platypus, ostrich, osx1010test, quail, emu.
| * | Fix for HDFFV-10051Vailin Choi2017-05-101-0/+1
| | | | | | | | | | | | | | | Fix missing declaration for H5D__layout_compact_dirty_test(). Tested on mayll and osx1010test.
| * | Fix for the two issues reported in HDFFV-10051Vailin Choi2017-05-103-14/+50
| | | | | | | | | | | | | | | Modifications made based on the review comments from pull request #494 Tested on moohan, mayll, kituo, platypus, ostrich, osx1010test, quail, emu.
| * | Fix for the two issues reported in HDFFV-10051:Vailin Choi2017-05-103-3/+130
|/ / | | | | | | | | | | | | | | | | | | | | (1) Repeated open/close of a compact dataset fails due to the increment of ndims in the dataset structure for every open. --This is done only for chunked dataset via H5D__chunk_set_sizes(). (2) layout "dirty" flag for a compact dataset is not reset properly after flushing the data at dataset close. --Reset the "dirty" flag before flushing the message to the object header via H5O_msg_write(). Tested on moohan, kituo, platypus, ostrich, osx1010test, quail, emu.
* | Merge pull request #492 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-05-051-1/+1
|\ \ | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '2c1e727b803203f2188c2d2854501c5a5b8efb23': Update one missed version string.
| * | Update one missed version string.lrknox2017-05-051-1/+1
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* | Merge pull request #489 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2017-05-052-201/+781
|\ \ | |/ |/| | | | | | | | | hdf5_1_10 * commit '5cde315a061d789ea9539265f96ec65454454983': Update release_docs/HISTORY-1_10.txt and RELEASE.txt after HDF5 1.10.1 release.
| * Update release_docs/HISTORY-1_10.txt and RELEASE.txt after HDF5 1.10.1lrknox2017-05-042-201/+781
|/ | | | release.
* Merge pull request #479 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10Larry Knox2017-04-271-1/+2
|\ | | | | | | | | * commit '4fb75982b1c1f896d5d42798fb5a253ffe008166': Change position of declaration to top of block
| * Change position of declaration to top of blockAllen Byrne2017-04-271-1/+2
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* Merge pull request #477 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to ↵Vailin Choi2017-04-269-159/+899
|\ | | | | | | | | | | | | | | hdf5_1_10 * commit 'ae05b0c726f565a13aed9a8edeefb39299c1ca6d': Modifications based on pull request review. Made couple changes based on the review comments. Incorporate patch from GE Healthcare (HDFFV-9934) This is the same patch that had already been integrated to 1.8 branch (pull request #387). Tested on moohan, ostrich, platypus, emu, osx1010test, quail, kituo, mayll.
| * Modifications based on pull request review.Vailin Choi2017-04-262-3/+3
| | | | | | | | Made couple changes based on the review comments.
| * Incorporate patch from GE Healthcare (HDFFV-9934)Vailin Choi2017-04-269-158/+898
|/ | | | | This is the same patch that had already been integrated to 1.8 branch (pull request #387). Tested on moohan, ostrich, platypus, emu, osx1010test, quail, kituo, mayll.
* Merge pull request #469 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:hdf5_1_10 to ↵Dana Robinson2017-04-252-30/+48
|\ | | | | | | | | | | | | hdf5_1_10 * commit '14bc39bcb59ce36d1d2fd156afeaf3aa7bb5ad84': Updated bin/trace to emit errors and reordered autogen.sh processing so that script failures leave the library in a non-compilable state, making it harder to ignore errors.
| * Updated bin/trace to emit errors and reordered autogen.sh processingDana Robinson2017-04-252-30/+48
|/ | | | | so that script failures leave the library in a non-compilable state, making it harder to ignore errors.
* Merge pull request #467 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10Larry Knox2017-04-256-18/+48
|\ | | | | | | | | * commit 'b3fb91a932546724344205529a37226aaa34367e': HDFFV-10173 revert and add dynlib flags
| * HDFFV-10173 revert and add dynlib flagsAllen Byrne2017-04-256-18/+48
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* Merge pull request #465 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to hdf5_1_10Allen Byrne2017-04-256-63/+127
|\ | | | | | | | | | | | | * commit '545fa4028aabec0e683351762f42eb4ffa5a5b7e': Merge cmake h5clear test changes Correct name of native function Change signature of H5PLget_size
| * Merge cmake h5clear test changesAllen Byrne2017-04-252-35/+92
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| * Correct name of native functionAllen Byrne2017-04-251-1/+1
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| * Change signature of H5PLget_sizeAllen Byrne2017-04-254-28/+35
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* Merge pull request #461 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to ↵Vailin Choi2017-04-2424-867/+508
|\ | | | | | | | | | | | | hdf5_1_10 * commit '6449f650e65a212f73b8ec551b699dd9991c6dde': Fix for HDFFV-10166 h5watch tests fail randomly to match expected output files (1) Re-structure tests to do one "extend" action at a time (2) Re-try test till max limit before final failure
| * Merge branch 'hdf5_1_10' of ↵Vailin Choi2017-04-240-0/+0
| |\ | |/ |/| | | https://bitbucket.hdfgroup.org/scm/~vchoi/my_hdf5_fork into hdf5_1_10
* | Merge pull request #460 in HDFFV/hdf5 from ~VCHOI/my_hdf5_fork:hdf5_1_10 to ↵Vailin Choi2017-04-2410-84/+102
|\ \ | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit 'ddd8cf0e1c0c1450de1c37ba866afad469cf63b3': Modifications based on review comments from pull request. Made changes according to review comments and discussion with Allen. Fix for DAILYTEST-259 h5clear test failure Deposit the test files in test/misc/testfiles for testh5clear.sh to use instead of depending on h5clear_gentest. Tested on kituo, osx1010test, quail, platypus and ostrich.
| | * Fix for HDFFV-10166 h5watch tests fail randomly to match expected output filesVailin Choi2017-04-2424-867/+508
| |/ | | | | | | | | (1) Re-structure tests to do one "extend" action at a time (2) Re-try test till max limit before final failure
| * Modifications based on review comments from pull request.Vailin Choi2017-04-244-106/+117
| | | | | | | | Made changes according to review comments and discussion with Allen.
| * Fix for DAILYTEST-259 h5clear test failureVailin Choi2017-04-249-44/+51
|/ | | | | Deposit the test files in test/misc/testfiles for testh5clear.sh to use instead of depending on h5clear_gentest. Tested on kituo, osx1010test, quail, platypus and ostrich.
* Merge pull request #456 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:hdf5_1_10 to ↵Dana Robinson2017-04-243-18/+12
|\ | | | | | | | | | | | | hdf5_1_10 * commit '87ceb783920c63cf374c08f17d7d601923481459': Fixed problems that prevent bin/trace from marking up some functions.
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