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| | * | | HDFFV-10686 add noteAllen Byrne2019-01-241-0/+15
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| | * | | HDFFV-10686 revert H5Oget_info1 to H5Oget_info(H5Ovisit)Allen Byrne2019-01-247-515/+444
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| * | | | Merge pull request #1490 in HDFFV/hdf5 from ~JHENDERSON/hdf5:hdf5_1_10 to ↵Jordan Henderson2019-01-242-139/+227
| |\ \ \ \ | | |/ / / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit 'e90d59a69f2750ac55ef5da20df5e8cba7693134': Add RELEASE.txt note for parallel filters test fix Updates to t_filters_parallel for missing filters
| | * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Jordan Henderson2019-01-244-17/+37
| | |\ \ \ | | |/ / / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'd26963b180a052ac063907f95596a7ecad08ef8e': Add clear objects to ignore tests Add new clear tests to ignore list Cleanup variable names HDFFV-10685 Always set version flags on OSX
| * | | | Merge pull request #1492 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2019-01-224-17/+37
| |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '7367fc0c1b916cffe50d1b8d729ccccfd6a9ec77': Add clear objects to ignore tests Add new clear tests to ignore list Cleanup variable names HDFFV-10685 Always set version flags on OSX
| | * | | | Add clear objects to ignore testsAllen Byrne2019-01-221-1/+5
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| | * | | | Add new clear tests to ignore listAllen Byrne2019-01-221-0/+5
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| | * | | | Cleanup variable namesAllen Byrne2019-01-221-2/+2
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| | * | | | HDFFV-10685 Always set version flags on OSXAllen Byrne2019-01-222-14/+25
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| | * | | Add RELEASE.txt note for parallel filters test fixJordan Henderson2019-01-221-0/+7
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| | * | | Updates to t_filters_parallel for missing filtersJordan Henderson2019-01-221-139/+220
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| * | | Merge pull request #1488 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Larry Knox2019-01-212-13/+13
| |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit 'c817bcdf0d345c8dbd2943be44b55db290cfd09f': MPI vars need passed in, change to grepTest Add parallel runtest for examples
| | * | | MPI vars need passed in, change to grepTestAllen Byrne2019-01-204-339/+11
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| | * | | Add parallel runtest for examplesAllen Byrne2019-01-193-4/+332
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| * | | | Merge pull request #1486 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2019-01-205-9/+128
| |\ \ \ \ | | |/ / / | |/| | | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '7880089c0be7eb6625cc9982775b522aee523b65': Merge pull request #1450 in HDFFV/hdf5 from ~SONGYULU/hdf5_ray:TRILAB-98-dt_arith-and-cpp_testhdf5-tests to develop
| | * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Larry Knox2019-01-197-60/+73
| | |\ \ \ | | |/ / / | |/| | | | | | | | | | | | | * commit '89b5b64b5c2db40e89e3304fa138de7c2ad1483f': Fix CMake policy 54 warnings
| * | | | Merge pull request #1487 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2019-01-197-60/+73
| |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '9f61f559d1541066b07c02609579bf053099ab90': Fix CMake policy 54 warnings
| | * | | | Fix CMake policy 54 warningsAllen Byrne2019-01-187-60/+73
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| | * | | Merge pull request #1450 in HDFFV/hdf5 from ↵Ray Lu2019-01-185-9/+128
| |/ / / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~SONGYULU/hdf5_ray:TRILAB-98-dt_arith-and-cpp_testhdf5-tests to develop * commit 'b02de315b93ac29d2483a91d526b110a25073505': NNSA Tri-LabsTRILAB-98: Another two test cases out. NNSA Tri-Labs TRILAB-98: Taking out a few more test cases. NNSA Tri-Labs TRILAB-98 dt_arith and cpp_testhdf5 tests fail on sierra.llnl.gov: According to the group decision, simply provide a macro to disable some failing test cases on sierra (IBM power9 cpu). All failing cases involve long double data type.
| | | * Fixed HDFFV-10586, HDFFV-10588, and HDFFV-10684Binh-Minh Ribler2019-01-319-28/+163
| | |/ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: HDFFV-10586 CVE-2018-17434 Divide by zero in h5repack_filters Added a check for zero value HDFFV-10588 CVE-2018-17437 Memory leak in H5O_dtype_decode_helper This is actually an Invalid read issue. It was found that the attribute name length in an attribute message was corrupted, which caused the buffer pointer to be advanced too far and later caused an invalid read. Added a check to detect attribute name and its length mismatch. The fix does not cover all cases, but it'll reduce the chance of this issue when a name length is corrupted or the attribute name is corrupted. HDFFV-10684 H5Ewalk does not stop until all errors in the stack are visited The test for HDFFV-10588 has revealed a bug in H5Ewalk. H5Ewalk did not stop midway even when the call back function returns H5_ITER_STOP. This is because a condition is missing from the for loops in H5E__walk causing the callback functions unable to stop until all the errors in the stack are iterated. Quincey advised on the final fix. In this fix, "status" is switched to "ret_value" and HGOTO_ERROR to HERROR, and the for loops won't continue when "ret_value" is not 0. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1011test)
| | * Merge branch 'hdf5_1_10' of ↵Binh-Minh Ribler2019-01-155-15/+65
| | |\ | | |/ | |/| | | | https://bitbucket.hdfgroup.org/scm/~bmribler/hdf5_1_10_bmr into hdf5_1_10
| * | Merge pull request #1478 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2019-01-151-2/+4
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '0250b3650fbcec1f592f4a7371158d6b81db01c0': Add check for existing links in hl/fortran/src/Makefile.am.
| | * \ Merge branch 'hdf5_1_10' of ↵Larry Knox2019-01-151-1/+1
| | |\ \ | | |/ / | |/| | | | | | https://bitbucket.hdfgroup.org/scm/~lrknox/hdf5_lrk into hdf5_1_10
| * | | Merge pull request #1477 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2019-01-141-1/+1
| |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '1b2fc19a8f46bff2d1ac8e25dbb40322d377eef3': Correct fix for new policy Fix for new policy
| | * | | Correct fix for new policyAllen Byrne2019-01-141-1/+1
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| | * | | Fix for new policyAllen Byrne2019-01-141-1/+1
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| | * | | Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Allen Byrne2019-01-144-14/+62
| | |\ \ \ | | |/ / / | |/| | | | | | | | | | | | | | | | | | | | | | | * commit '3476c7d13d4124f7e0752f251a667bef6b4fbf68': Merge pull request #1429 in HDFFV/hdf5 from HDFFV-10596-fortran-library-names-differ to develop Work around compiler fussiness on platypus. Fix for debug assert in H5FDmpio.c
| * | | | Merge pull request #1475 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2019-01-142-0/+22
| |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit 'e61b3a7de95c23f4f24282bad41c5154643741a5': Merge pull request #1429 in HDFFV/hdf5 from HDFFV-10596-fortran-library-names-differ to develop
| | | * \ \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Allen Byrne2019-01-1128-246/+1835
| | | |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'dadf2b5fd8689e15ee5d28c74a5956391e914809': Fix for parallel filters tests with new read-proc0-broadcast feature misc. merge clean-up misc. merge clean-up Fix for Fortran failures. merged:
| | | * \ \ \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Allen Byrne2019-01-0916-30/+305
| | | |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'a043211d9edf2df3ea8049bda4be6bdcbf0970e9': Delay checking if decoded message's "shareable" flag is appropriate for the message type until we've verified we understand the message type. Reduce size of H5O_msg_class_g to *not* include space for H5O_BOGUS_INVALID. Make bogus messages shareable. Add new bogus message test with shareable messages to cover the formerly problematic code. Re-run gen_bogus.c to add this test case and also to fix the bogus_invalid messages that were no longer H5O_BOGUS_INVLAID due to a new message class being added in a previous commit. Added comment to remind developers to run gen_bogus.c when adding a new message class. Remove H5O_BOGUS_INVALID_ID from H5O_msg_class_g initialization, since space for it was removed. Fortran wrappers for dataset obj header minimization API calls.
| | | | | | * | Add check for existing links in hl/fortran/src/Makefile.am.Larry Knox2019-01-151-2/+4
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| | * | | | | Merge pull request #1429 in HDFFV/hdf5 from ↵Larry Knox2019-01-142-0/+22
| |/ / / / / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | HDFFV-10596-fortran-library-names-differ to develop * commit 'f4c9ec5d41aa53829617274d3286f1e9a45ae57e': Add RELEASE.txt entry for HDFFV-10596. Uninstall should remove the libhdf5_hl_fortran links. Add symlinks named libhdf5_hl_fortran* to libhdf5hl_fortran in Makefile.am to match cmake install and the name pattern for other hl lib files.
| * | | | | Merge pull request #1474 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_10 to ↵Larry Knox2019-01-141-13/+39
| |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '1ba63f95d3d600be43f2d3e00f204d36d6e9a1a4': Work around compiler fussiness on platypus.
| | * | | | | Work around compiler fussiness on platypus.Quincey Koziol2019-01-141-13/+39
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| * | | | | Merge pull request #1473 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:hdf5_1_10 to ↵Dana Robinson2019-01-141-1/+1
| |\ \ \ \ \ | | |_|_|/ / | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '110eabd3e559a1e6002e96633a9ac892c21c1211': Fix for debug assert in H5FDmpio.c
| | * | | | Fix for debug assert in H5FDmpio.cDana Robinson2019-01-141-1/+1
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| | | | * Fixed HDFFV-10578Binh-Minh Ribler2019-01-153-3/+19
| | |_|/ | |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: - HDFFV-10578 - CVE-2018-17234 Memory leak in H5O__chunk_deserialize() Actually, the leak was in h5tools_util. Applied Neil's fix. - Changed an assert to if/HGOTO_ERROR to fail gracefully. Platforms tested: Linux/64 (jelly) Linux/64 (platypus) Darwin (osx1010test)
| * | | Merge pull request #1470 in HDFFV/hdf5 from hdf5_10_0_squash to hdf5_1_10Scot Breitenfeld2019-01-1127-242/+1831
| |\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'c9cf24506b4fb1c50ea553d3ab962c37ac86760a': Fix for parallel filters tests with new read-proc0-broadcast feature misc. merge clean-up misc. merge clean-up merged:
| | * | | Fix for parallel filters tests with new read-proc0-broadcast featureJordan Henderson2019-01-111-4/+8
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| | * | | misc. merge clean-upM. Scot Breitenfeld2019-01-111-3/+0
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| | * | | misc. merge clean-upM. Scot Breitenfeld2019-01-113-47/+40
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| | * | | merged:M. Scot Breitenfeld2019-01-1027-218/+1813
| | | |/ | | |/| | | | | | | | | | | | | HDFFV-10652 HDFFV-10443
| * | | Merge pull request #1469 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:hdf5_1_10 to ↵Dana Robinson2019-01-111-4/+4
| |\ \ \ | | |/ / | |/| | | | | | | | | | | | | | | | | | hdf5_1_10 * commit 'b52def6b9a38e6b24848d69e5eb37da0be97a94c': Fix for Fortran failures.
| | * | Fix for Fortran failures.Dana Robinson2019-01-111-4/+4
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| * | Merge pull request #1457 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2019-01-099-528/+515
| |\ \ | | |/ | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '46f63b0faafe574ca2a32380ea85cac8206b1028': Fix deprecated H5Pget_version Fix java regex Merge CMake changes from develop
| | * Fix deprecated H5Pget_versionAllen Byrne2019-01-094-52/+24
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| | * Fix java regexAllen Byrne2019-01-091-36/+36
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| | * Merge CMake changes from developAllen Byrne2019-01-085-476/+491
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| * | Merge pull request #1459 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:hdf5_1_10 to ↵Dana Robinson2019-01-097-5/+252
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 * commit '688074781ac7be2b7e799e8804378ba1f1563db1': Fortran wrappers for dataset obj header minimization API calls.
| | * | Fortran wrappers for dataset obj header minimization API calls.Dana Robinson2019-01-097-5/+252
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