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* [svn-r15637] Bug 710: partial fix.Albert Cheng2008-09-163-148/+150
| | | | | | | | | | | Temporary removed b2 from the --enable-debug=all list so that this option will pass. "configure --help" lists the --enable-debug=all and users tend to use it and end up with compile failures in the b2 debug code. Since this bug will not be fixed soon, this is a temporary fix to let the configure and build work. Tested: h5committest plus "--enable-debu=all" test in kagiso.
* [svn-r15636] formatted codePedro Vicente Nunes2008-09-161-3790/+3850
| | | | tested: windows, linux
* [svn-r15635] add info regarding user block to usagePedro Vicente Nunes2008-09-161-1/+2
| | | | tested: windows, linux
* [svn-r15634] Add a default user block size of 1024 when none is givenPedro Vicente Nunes2008-09-162-5/+11
| | | | Tested: windows, linux
* [svn-r15633] Description:Scot Breitenfeld2008-09-162-1/+205
| | | | Added test routines for h5t_get/set_fields_f.
* [svn-r15630] Description:Scot Breitenfeld2008-09-161-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | | | | In nh5tget_offset_c: (1) The return value type of H5Tget_offset was set to size_t where it should be of type int. (2) Was if offset was equal to 0 it returned the error code of -1 back to Fortran, this was changed to return an error code of -1 when the offset value is < 0. In h5tget_norm_c: (1) was if the return value of H5Tget_norm = 0 it would return an error code to Fortran, but from enum of the return value: typedef enum H5T_norm_t { H5T_NORM_ERROR = -1, /*error */ H5T_NORM_IMPLIED = 0, /*msb of mantissa isn't stored, always 1 */ H5T_NORM_MSBSET = 1, /*msb of mantissa is always 1 */ H5T_NORM_NONE = 2 /*not normalized */ /*H5T_NORM_NONE must be last */ } H5T_norm_t; only when -1 is returned is there an error, changed it to return an error only if the value of H5T_NORM_ERROR = -1.
* [svn-r15628] Description:Quincey Koziol2008-09-16240-4810/+4810
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r15627] This check-in fixes a bug inside parallel HDF5 testsuite.MuQun Yang2008-09-161-2/+22
| | | | | | | | | When enable-debug is turned on, a special macro block H5_HAVE_INSTRUMENTED_LIBRARY inside HDF5 will be executed to check if some collective chunk IO test cases are being run with the correct settings(one link, multiple chunk etc.). However,when complicated derived datatype in some mpi-io packages are not supported, the library has to switch one link IO with/without the optimization to multiple chunk IO with/without the optimization. The current testsuite doesn't know this and generates a false assertion failure message. This check-in fix this problem by providing a second property to avoid the false faiure message. Tested at abe(NCSA linux cluster) and kagiso.
* [svn-r15626] This check-in fixes a bug inside parallel HDF5 testsuite.MuQun Yang2008-09-162-2/+32
| | | | | | | | | When enable-debug is turned on, a special macro block H5_HAVE_INSTRUMENTED_LIBRARY inside HDF5 will be executed to check if some collective chunk IO test cases are being run with the correct settings(one link, multiple chunk etc.). However,when complicated derived datatype in some mpi-io packages are not supported, the library has to switch one link IO with/without the optimization to multiple chunk IO with/without the optimization. The current testsuite doesn't know this and generates a false assertion failure message. This check-in fix this problem by providing a second property to avoid the false faiure message. Tested at abe(NCSA linux cluster) and kagiso.
* [svn-r15622] Purpose: Add new source files to Windows projectsScott Wegner2008-09-154-0/+42
| | | | | | | | Description: This checkin adds the following source files to our Windows projects: -- H5EAiblock.c -- H5EAstat.c -- H5EAdbg.c
* [svn-r15619] Snapshot version 1.9 release 17HDF Tester2008-09-148-57/+59
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* [svn-r15618] Description:Quincey Koziol2008-09-111-57/+197
| | | | | | | | | | | | | | | | | | | | | | Add additional test and make a few cleanups in extensible array unit test. Tested on: Mac OS X/32 10.5.4 (amazon) in debug mode Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15617] Description:Quincey Koziol2008-09-1111-166/+429
| | | | | | | | | | | | | | | | | | | | | | | | Clean up how v2 B-tree (and extensible array) classes are determined in h5debug. Add support for extensible array headers and index blocks to h5debug Tested on: Mac OS X/32 10.5.4 (amazon) in debug mode Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15614] Description:Quincey Koziol2008-09-1116-159/+1238
| | | | | | | | | | | | | | | | | | | | | | More extensible array features: add support for setting/getting elements in the array's index block. Tested on: Mac OS X/32 10.5.4 (amazon) in debug mode Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15612] Description:Quincey Koziol2008-09-114-12/+11
| | | | | | | | | | | | | | | | | | | | | Minor formatting cleanups Tested on: Mac OS X/32 10.5.4 (amazon) in debug mode Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15609] Description:Quincey Koziol2008-09-1056-2304/+2559
| | | | | | | | Omnibus compiler warning cleanup & some reformatting also. Tested on: Mac OS X/32 10.5.4 (amazon) Too minor to require h5committest
* [svn-r15604] The MPI compiler(mvapich2-0.9.8p2patched-intel-ofed-1.2) at ↵MuQun Yang2008-09-081-1/+3
| | | | | | | | | NCSA's linux cluster(Abe) fails to handle collective IO calls with very complicate MPI derived datatype. All the values of input parameters from HDF5 are correct before passing to MPI-IO collective calls. Sometimes the following errors happen: rank 0 in job 77 honest1.ncsa.uiuc.edu_60945 caused collective abort of all ranks exit status of rank 0: killed by signal 9 Up to this point, we decide to turn off the use of advanced MPI derived datatype features inside HDF5 so that complicated selection tests are ensured to be handled by HDF5. This check-in reflects this.
* [svn-r15601] Description:Scot Breitenfeld2008-09-081-0/+1
| | | | Added windows fortran DLL function file, hdf5_fortrandll.def
* [svn-r15598] Description:Scot Breitenfeld2008-09-0816-3022/+861
| | | | Moved all the windows DLL function declarations to one file (hdf5_fortrandll.def).
* [svn-r15595] Snapshot version 1.9 release 16HDF Tester2008-09-078-21/+21
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* [svn-r15591] Description:Scot Breitenfeld2008-09-031-7/+7
| | | | Changed the detection of double back which was failing on 32 bit machines.
* [svn-r15590] Description:Scot Breitenfeld2008-09-031-1/+1
| | | | Changed blank spacing in Fortran output so the output aligns correctly
* [svn-r15588] Purpose: Add new h5repack tests to WindowsScott Wegner2008-09-031-1/+5
| | | | | | | | Description: New h5repack tests were added in revision 15551 and 15557, and also the syntax of one test was changed. This was causing errors on Windows. This checkin should fix those errors. Tested: VS2005 on WinXP
* [svn-r15586] Description:Scot Breitenfeld2008-09-032-45/+61
| | | | | Changed the test for intrinsic Fortran function SIZEOF by using AC_TRY_RUN instead of AC_TRY_COMPILE.
* [svn-r15585] Purpose: Use H5test_kind_SIZEOF.f90 rather than H5test_kind.f90 ↵Scott Wegner2008-09-031-17/+17
| | | | | | | in Windows Description: A new version of H5test_kind is safer for platforms that support sizeof. We have replaced H5test_kind.f90 with it on Windows
* [svn-r15584] Purpose: Add new extensible array source code and test project ↵Scott Wegner2008-09-0313-4/+1196
| | | | | | | | | for Windows Description: In revision 15549, new source code was added for the extensible array interface. This checkin adds the source code to Windows, along with the new test project, earray. Note: The new H5EA interface causes compilation errors on Windows, and will need to be fixed in the source.
* [svn-r15582] Added script to build h5perf_serial in standalone mode.Christian Chilan2008-09-022-0/+29
| | | | Tested on kagiso, smirom, and linew.
* [svn-r15577] Description:Scot Breitenfeld2008-09-022-41/+45
| | | | Moved AM_CONDITIONAL([FORTRAN_HAVE_SIZEOF]....) outside of Fortran conditional loop so that the value gets registered regardless of whether Fortran is enabled.
* [svn-r15576] Decription:Scot Breitenfeld2008-09-021-0/+1
| | | | | | Added the file: ./fortran/src/H5test_kind_SIZEOF.f90
* [svn-r15573] Description:Scot Breitenfeld2008-09-012-8/+31
| | | | Compiles either H5test_kind.f90 or H5test_kind_SIZEOF.f90 depending on the availability of intrinsic Fortran function SIZEOF (indicated by the status of FORTRAN_HAVE_SIZEOF).
* [svn-r15572] Desciption:Scot Breitenfeld2008-09-011-125/+117
| | | | Was not returning the correct fortran types when -i8 and -r8 flag was specified, fixed. This code is now depreciated and only used when SIZEOF function is not available, H5test_kind_SIZEOF.f90 should be used instead.
* [svn-r15571] Description:Scot Breitenfeld2008-09-011-0/+100
| | | | H5test_kind_SIZEOF.f90 is the preferred portable program used for Fortran type detection. It uses the intrinsic Fortran function SIZEOF. This program should be used instead of H5test_kind.f90 if the SIZEOF function is available. Most of the newer Fortran compilers support SIZEOF.
* [svn-r15570] Description:Scot Breitenfeld2008-09-012-29/+105
| | | | Added a test for the availability of intrinsic Fortran function SIZEOF. Sets the global variable FORTRAN_HAVE_SIZEOF depending if SIZEOF is available.
* [svn-r15565] Snapshot version 1.9 release 15HDF Tester2008-08-3111-31/+40
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* [svn-r15563] Added support for serial prefix HDF5_PREFIX.Christian Chilan2008-08-292-20/+14
| | | | Tested on kagiso, smirom, and linew.
* [svn-r15561] Description:Quincey Koziol2008-08-298-87/+993
| | | | | | | | | | | | | | | | | | | | | | | | | | Update extensible array code with function to open an existing earray, add more tests and avoid running the test when core/split/family/multi VFDs are used. Clean up fractal heap test code a bit and expand some of the tests a little bit also. Tested on: Mac OS X/32 10.5.4 (amazon) in debug mode Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15559] new feature for h5repack (alignment)Pedro Vicente Nunes2008-08-291-0/+2
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* [svn-r15557] bug fix: the -m flag add a long description of "--threshold" ↵Pedro Vicente Nunes2008-08-291-1/+1
| | | | | | that was changed to "--minimum" because "--threshold" now refers to the threshold parameter for H5Pset_alignment tested: linux
* [svn-r15556] Check options for H5Pset_alignment.Pedro Vicente Nunes2008-08-291-9/+2
| | | | | | threshold is zero default (a valid value) but zero is not a valid alignment tested: windows, linux
* [svn-r15552] Fix potential memory leak in H5E_close_msg_cb.Neil Fortner2008-08-281-1/+4
| | | | Tested: kagiso
* [svn-r15551] 1) There are 2 new command line parameters for h5repack. ↵Pedro Vicente Nunes2008-08-287-23/+192
| | | | | | | | | | | | Together they allow a call to H5Pset_alignment to be made -t T, --threshold=T Threshold value for H5Pset_alignment -a A, --alignment=A Alignment value for H5Pset_alignment 2) bug fix the printing of the dataset name was not done for references (verbose mode) tested: windows, linux
* [svn-r15550] Description:Quincey Koziol2008-08-281-150/+189
| | | | | | | | Clean up compiler warnings and code a bit. Tested on: Mac OS X/32 10.5.4 (amazon) Too minor to require h5committest
* [svn-r15549] Description:Quincey Koziol2008-08-2828-108/+2620
| | | | | | | | | | | | | | | | | | | | | | | | | | | Initial checkin of extensible array data structure prototype code and regression tests. Initial definitions for revised FUNC_ENTER/LEAVE and error reporting macros, which are being vetted in the extensible array code. Minor warning and formatting cleanups in other sections of code. Tested on: Mac OS X/32 10.5.4 (amazon) in debug mode Mac OS X/32 10.5.4 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r15547] fix typosPedro Vicente Nunes2008-08-272-2/+2
| | | | tested: linux
* [svn-r15546] Purpose: Add new Fortran source fileScott Wegner2008-08-272-25/+27
| | | | | | | | Description: There is a new Fortran file, H5_DBLE_InterfaceInclude.f90, which needs to be added to Windows. There is also another version, *InterfaceExclude.f90, which is for users that build with the -r8 flag. However, we don't include this on Windows, as it is not currently a common option. If we get requests from users, we can add documentation for using this alternative interface. Tested: VS2005 w/ IVF9.1 on WinXP
* [svn-r15543] Description:Scot Breitenfeld2008-08-271-0/+1
| | | | | Put the DOUBLE PRECISION interfaces in a separate module and added a USE statement for the module. The interfaces are included/excluded depending on the state of FORTRAN_DEFAULT_REALisDBLE_F which detects if the default REAL is DOUBLE PRECISION. This allows the library to be compiled with -r8 Fortran flag without the user needing to change the source code.
* [svn-r15541] Description:Scot Breitenfeld2008-08-268-1990/+2115
| | | | | Put the DOUBLE PRECISION interfaces in a separate module. The interfaces are included/excluded depending on the state of FORTRAN_DEFAULT_REALisDBLE_F which detects if the default REAL is DOUBLE PRECISION. This allows the library to be compiled with -r8 Fortran flag without the user needing to change the source code.
* [svn-r15540] Description:Scot Breitenfeld2008-08-262-33/+40
| | | | Enable building shared library for fortran by adding the flag -fPIC to the compile flags for versions of Intel Fortran compiler >=9
* [svn-r15539] Description:Scot Breitenfeld2008-08-261-1/+1
| | | | Fixed spacing issue for fortran summary line.
* [svn-r15537] add a mention to h5repack new featurePedro Vicente Nunes2008-08-261-0/+1
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