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* Merge pull request #2140 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_12 to ↵hdf5-1_12_0-alpha1Larry Knox2019-12-126-7/+7
|\ | | | | | | | | | | | | hdf5_1_12 * commit '4b569143f07b4cc32cb4c26fdf24d5ae6ae50172': Update version to 1.12.0-alpha1.
| * Update version to 1.12.0-alpha1.Larry Knox2019-12-126-7/+7
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* Merge pull request #2134 in HDFFV/hdf5 from ~BYRN/hdf5_merge_adb:hdf5_1_12 ↵Allen Byrne2019-12-114-718/+727
|\ | | | | | | | | | | | | to hdf5_1_12 * commit 'abf6bb125007b9df5cbd1c10f63541a1f0e65bb1': HDFFV-10979 Merge global name fix from develop
| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_12)Allen Byrne2019-12-11110-5226/+7448
| |\ | |/ |/| | | | | | | | | | | | | | | | | | | | | | | | | * commit 'f30381d33d9e179ec30a8b46c2db218f2c45d2c1': Fix issues when using ONLY_SHARED_LIBS Change defines to not conflict with windows Correct assignment Fix h5watch fault Add missing include folder Fix reference file Correct testfile name Remove program find - future rework Fix compile error and add ref destroy to Java test HDFFV-10876 Merge from develop Remove unneeded flag overwrites
* | Merge pull request #2117 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_12 to ↵Allen Byrne2019-12-11110-5226/+7448
|\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_12 * commit '907a630019c9059eafb0e5af3aeb0f63f47d3d44': Fix issues when using ONLY_SHARED_LIBS Change defines to not conflict with windows Correct assignment Fix h5watch fault Add missing include folder Fix reference file Correct testfile name Remove program find - future rework Fix compile error and add ref destroy to Java test HDFFV-10876 Merge from develop Remove unneeded flag overwrites
| * \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_12)Allen Byrne2019-12-112-2/+2
| |\ \ | |/ / |/| | | | | | | | * commit '9b38aef978299a76b6b19586396bf626a1e58df6': Fix 2010 compile issue
| * | Fix issues when using ONLY_SHARED_LIBSAllen Byrne2019-12-114-4/+3
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| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_12)Allen Byrne2019-12-111-0/+6
| |\ \ | | | | | | | | | | | | | | | | | | | | * commit '3eef4d575ebd23eeb54660e244e604e0159a0aec': Latest date first in HISTORY-1_10_0-1_12_0.txt Update HISTORY-1_10_0-1_12_0..txt with performance improvements
| * | | Change defines to not conflict with windowsAllen Byrne2019-12-1111-199/+208
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| * | | Correct assignmentAllen Byrne2019-12-101-1/+1
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| * | | Fix h5watch faultAllen Byrne2019-12-101-10/+11
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| * | | Add missing include folderAllen Byrne2019-12-101-1/+1
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| * | | Fix reference fileAllen Byrne2019-12-101-1006/+1009
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| * | | Correct testfile nameAllen Byrne2019-12-091-2/+2
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| * | | Remove program find - future reworkAllen Byrne2019-12-091-18/+0
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| * | | Fix compile error and add ref destroy to Java testAllen Byrne2019-12-091-202/+105
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| * | | HDFFV-10876 Merge from developAllen Byrne2019-12-0993-3924/+6257
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| * | | Remove unneeded flag overwritesAllen Byrne2019-12-091-8/+0
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| | | * HDFFV-10979 Merge global name fix from developAllen Byrne2019-12-114-718/+727
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* | | Merge pull request #2129 in HDFFV/hdf5 from ~BYRN/hdf5_merge_adb:hdf5_1_12 ↵Allen Byrne2019-12-112-2/+2
|\ \ \ | |_|/ |/| | | | | | | | | | | | | | to hdf5_1_12 * commit '555d7a6ce3731fb27e67fed692196a38a77c8d62': Fix 2010 compile issue
| * | Fix 2010 compile issueAllen Byrne2019-12-112-2/+2
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* | Merge pull request #2121 in HDFFV/hdf5 from ↵Chris Hogan2019-12-111-0/+6
|\ \ | |/ |/| | | | | | | | | | | ~CHOGAN/hdf5:chogan/1.12/release_txt to hdf5_1_12 * commit '080b96fb25cd4752914f3b77f944d5982c8ab139': Latest date first in HISTORY-1_10_0-1_12_0.txt Update HISTORY-1_10_0-1_12_0..txt with performance improvements
| * Latest date first in HISTORY-1_10_0-1_12_0.txtChris Hogan2019-12-101-6/+6
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| * Update HISTORY-1_10_0-1_12_0..txt with performance improvementsChris Hogan2019-12-101-0/+6
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* Merge pull request #2116 in HDFFV/hdf5 from ↵Jerome Soumagne2019-12-0922-325/+571
|\ | | | | | | | | | | | | | | | | | | ~JSOUMAGNE/hdf5:hdf5-1_12-ref_token to hdf5_1_12 * commit '1aea46ce671daf2828ac65d0b8551b369f497922': Fix H5VL_token_t type and fix H5VL_loc_by_token to use H5VL_token_t * Change hdset_reg_ref_t and H5R_ref_t from arrays of unsigned char to structs containing those arrays. Encapsulating the arrays in this way makes it easier to write and think about pointers to these types, casts to/from these types, etc. H5R: fix H5Tconv to check for null references Remove H5VL_NATIVE_FILE_GET_FILE_ID and add H5VL_OBJECT_GET_FILE
| * Fix H5VL_token_t type and fix H5VL_loc_by_token to use H5VL_token_t *Jerome Soumagne2019-12-097-33/+35
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| * Change hdset_reg_ref_t and H5R_ref_t from arrays of unsigned char toDavid Young2019-12-094-144/+145
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | structs containing those arrays. Encapsulating the arrays in this way makes it easier to write and think about pointers to these types, casts to/from these types, etc. An interesting side-effect that we probably should *not* rely on is that the struct-encapsulation changes the alignment so that some GCC warnings about casts that increase the alignment requirement of the operand go away. Warnings like that have to be taken seriously: I will add -Werror=cast-align to the default compiler flags so that they stop the build quickly. GCC warnings led me to some surprising casts in test/trefer.c. I found that it was possible to make many simplifications after introducing the struct-encapsulation that I described, above. In test objcopy_ref `same_file` is assigned but never used. Delete it.
| * H5R: fix H5Tconv to check for null referencesJerome Soumagne2019-12-095-46/+304
| | | | | | | | | | | | Valid for both deprecated and non-deprecated references Update test
| * Remove H5VL_NATIVE_FILE_GET_FILE_ID and add H5VL_OBJECT_GET_FILEJerome Soumagne2019-12-0916-103/+88
| | | | | | | | Remove H5F__get_file_id() and use only private routine instead
* | Merge pull request #2115 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:tmp_112 to ↵Neil Fortner2019-12-091-1/+1
|\ \ | |/ |/| | | | | | | | | hdf5_1_12 * commit '096ed7a14a6b4fe19ad9d3791e769f4a650c3042': Modify H5Ssel_iter_get_seq_list() to accept iterators that have reached the end of iteration (returning zero sequences). Previously it could cause an assertion failure.
| * Modify H5Ssel_iter_get_seq_list() to accept iterators that have reachedNeil Fortner2019-12-091-1/+1
| | | | | | | | | | the end of iteration (returning zero sequences). Previously it could cause an assertion failure.
* | Merge pull request #2112 in HDFFV/hdf5 from ↵Chris Hogan2019-12-091-0/+6
|\ \ | |/ |/| | | | | | | | | ~CHOGAN/hdf5:chogan/1.12/10934_release_txt to hdf5_1_12 * commit 'b4f0d111f8c2da38521aa4d16686081d05791fce': Add RELEASE.txt entry for Jira 10934
| * Add RELEASE.txt entry for Jira 10934Chris Hogan2019-12-091-0/+6
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* | Merge pull request #2114 in HDFFV/hdf5 from ~JSOUMAGNE/hdf5:hdf5-1_12-revert ↵Jerome Soumagne2019-12-09104-5832/+275
|\ \ | |/ |/| | | | | | | | | to hdf5_1_12 * commit '49fe497201bcefcd9beb01fe8fc2175974b73799': Revert "Merge branch 'hdf5_1_12' of https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into hdf5_1_12"
| * Revert "Merge branch 'hdf5_1_12' of ↵Jerome Soumagne2019-12-09104-5832/+275
| | | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/hdffv/hdf5 into hdf5_1_12" This reverts commit 9f9336a5bd541752f472bab4c93da8de89f862cd, reversing changes made to 437a1919e7ba60fe75a33a466d264183a0255319.
* | Merge pull request #2104 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:tmp_112_3 to ↵Neil Fortner2019-12-061-1/+2
|\ \ | | | | | | | | | | | | | | | | | | hdf5_1_12 * commit 'afb6ae776b3c60b37898dae4ee93f8976da90d42': Add H5VL_MAP_OPTIONAL operation id (unused currently).
| * | Add H5VL_MAP_OPTIONAL operation id (unused currently).Neil Fortner2019-12-061-1/+2
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* | Merge pull request #2103 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:tmp_112_2 to ↵Neil Fortner2019-12-063-8/+26
|\ \ | | | | | | | | | | | | | | | | | | hdf5_1_12 * commit 'aefd0cbc60eeed3319776f76f0cde889072cc31b': Implement support for using H5Dvlen_get_buf_size with non-native VOL connectors.
| * | Implement support for using H5Dvlen_get_buf_size withNeil Fortner2019-12-063-8/+26
| |/ | | | | | | non-native VOL connectors.
* | Merge pull request #2102 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:tmp_112 to ↵Neil Fortner2019-12-062-87/+130
|\ \ | |/ |/| | | | | | | | | hdf5_1_12 * commit '46a3961d086aa1d90fa8519792cf4c5e7fe2ae26': Add support for scalar dataspaces to H5Sproject_intersection. Add checking for ank validity.
| * Add support for scalar dataspaces to H5Sproject_intersection. AddNeil Fortner2019-12-062-87/+130
|/ | | | checking for ank validity.
* Merge pull request #2101 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:tmp_112_5 to ↵Neil Fortner2019-12-061-4/+4
|\ | | | | | | | | | | | | hdf5_1_12 * commit '47f6c293a78aaa92c80b327795b1f1a242ea30a5': Fix issues with using H5Pget_fill_value() with file datatypes retrieved from H5VLget_file_type().
| * Fix issues with using H5Pget_fill_value() with file datatypes retrievedNeil Fortner2019-12-061-4/+4
| | | | | | | | from H5VLget_file_type().
* | Merge pull request #2096 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:tmp_112 to ↵Neil Fortner2019-12-061-0/+9
|\ \ | | | | | | | | | | | | | | | | | | hdf5_1_12 * commit '681d227e9ee7876922fb05e609db18425cb1630d': Fix issue where H5R__reopen_file did not make the file "post open" callback.
| * | Fix issue where H5R__reopen_file did not make the file "post open"Neil Fortner2019-12-062-1/+10
| | | | | | | | | | | | callback.
* | | Merge pull request #2100 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:tmp_112_4 to ↵Neil Fortner2019-12-065-34/+163
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_12 * commit '209a86de37497b160ff49b9956f58558194eee25': Fix missing free in H5T__ref_mem_read() Fix bugs in H5VL file comparison code. Add short circuit success to H5VL_cmp_connector_cls(). Implement file comparison VOL callback. Other changes to allow references to work with non-native connectors. There is a bug somewhere.
| * | | Fix missing free in H5T__ref_mem_read()Neil Fortner2019-12-061-0/+2
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| * | | Fix bugs in H5VL file comparison code. Add short circuit success toNeil Fortner2019-12-063-10/+16
| | | | | | | | | | | | | | | | H5VL_cmp_connector_cls().
| * | | Implement file comparison VOL callback. Other changes to allowNeil Fortner2019-12-064-31/+152
| | |/ | |/| | | | | | | | | | references to work with non-native connectors. There is a bug somewhere.
* | | Merge pull request #2099 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:tmp_112_3 to ↵Neil Fortner2019-12-061-17/+113
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_12 * commit '2b14a8fd7e9221e258f3a2ed6dd0f79a30d5221f': Add support for point selections to H5S_select_project_intersection.