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* [svn-r8677] Purpose:Quincey Koziol2004-06-1410-295/+194
| | | | | | | | | | | | | | | | | | | Code cleanup & optimization Description: Remove old structures that used a union to store information about the dataspace extent and just store the information directly in the dataspace extent itself. Remove ifdef'd references to permutation ordering in dataspaces. We'll definitely need more than this code if/when we implement this feature. Change allocation of dataspace information from calloc() to malloc(). Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8675] Purpose:Quincey Koziol2004-06-132-28/+7
| | | | | | | | | | | | | Code optimization Description: Using existing dataspace extent copying routine instead of duplicating the code (more slowly). Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8673] Purpose:Quincey Koziol2004-06-1316-546/+626
| | | | | | | | | | | | | | | | | | Code optimization Description: Revised dataspace selections to use a more "object oriented" mechanism to set the function pointers for each selection and selection iterator. This reduces the amount and number of times that dataspace selection info has to be copied. Additionally, change hyperslab selection information to be dynamically allocated instead of an inline struct. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8672] Snapshot version 1.7 release 28HDF Admin2004-06-136-17/+27
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* [svn-r8670] Purpose:Quincey Koziol2004-06-133-16/+128
| | | | | | | | | | | | | Code optimization Description: Avoid a memory copy by directly reading from the variable-length sequence buffer when there is no type conversion on the way to disk. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8668] Purpose:Quincey Koziol2004-06-131-54/+63
| | | | | | | | | | | | | | Code optimization Description: Avoid running conversion routine when it's a noop. Also, pick a minimum size for the variable-sized sequence conversion buffer, instead of allocating lots of small buffers. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel
* [svn-r8666] Purpose:Quincey Koziol2004-06-133-165/+147
| | | | | | | | | | | | | | Code optimization Description: Restructure conversion loop of variable-length objects to avoid walking through memory backwards and allocating as many temporary buffers. (This uses the optimized method used in the atomic type conversions) Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8664] Purpose:Quincey Koziol2004-06-126-30/+426
| | | | | | | | | | | | | | Code optimization Description: Allow global heap collections to grow in size (up to a 64K limit) if they are able to. This allows them to grow to a more reasonable size than the 4K minimum size. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8661] Purpose: Add comments.Raymond Lu2004-06-111-2/+4
| | | | | | | Description: More comments to clarify action. Platforms tested: No code change, no test.
* [svn-r8659] Purpose:Pedro Vicente Nunes2004-06-112-7/+2
| | | | | | | | | | | | | | | | | bug fix Description: a prototype for a new function used by h5tools_str.c was accidently left in that file the c++ treats this as an error Solution: removed the prototype, and pointed to the correct one (in h5tools_ref.h ) Platforms tested: Free BSD (c++) linux Misc. update:
* [svn-r8656] Purpose:Quincey Koziol2004-06-112-10/+6
| | | | | | | | | | | | | Code optimization Description: Eliminate redundant memory allocation for type conversion of variable-length sequences. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel Too minor to require h5committest
* [svn-r8655] Purpose:Quincey Koziol2004-06-112-4/+5
| | | | | | | | | | | Code cleanup Description: Add more files that should be removed to the clean & distclean targets. Platforms tested: FreeBSD 4.10 (sleipnir) Too minor to require h5committest
* [svn-r8653] Purpose:Pedro Vicente Nunes2004-06-104-3/+22
| | | | | | | | | | | | | | | | bug fix Description: the file tfilters.h5 was missing the szip dataset, due to a absent szip configuration when it was generated Solution: generated it it again with szip on Platforms tested: linux (smalll change ) Misc. update:
* [svn-r8651] Purpose:Quincey Koziol2004-06-101-3/+3
| | | | | | | | | | | Code optimization Description: Eliminate redundant memset() when creating chunk map structure. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel
* [svn-r8648] Purpose:Quincey Koziol2004-06-102-14/+6
| | | | | | | | | | | | | Code optimization Description: Eliminate some operations through temporary variables in H5F_addr_encode. Eliminate some redundant memset()'s of structures that will be completely overwritten in the variable-length datatype code. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel
* [svn-r8647] Purpose:Pedro Vicente Nunes2004-06-1013-681/+347
| | | | | | | | | | | | | | h5dump update Description: updated the h5dump test files generator , so that it coincides with the 1.6 branch Solution: Platforms tested: linux (small) Misc. update:
* [svn-r8646] *** empty log message ***Raymond Lu2004-06-104-5/+227
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* [svn-r8645] Purpose: bug fixRaymond Lu2004-06-101-0/+2
| | | | | | | | | | | | | Description: If compound datatype has variable-length string as field, after it's committed to the file, when it's reopened, the size of the datatype is miscalculated. It makes the data unreadable. Dumper also fails to read data because of this problem. Solution: Change the size of datatype when it's committed to file. Then modify the size again for memory type when it's reopened. Platforms tested: h5committest and RH 8. Misc. update: RELEASE.txt
* [svn-r8644] Purpose: h5dump new featuresPedro Vicente Nunes2004-06-1025-43/+1108
| | | | | | | | | | | | | | | | | | | | | | | Description: added the code for print strings with new line and display the path of references (new source files h5tools_ref.c and .h ) added a test suite in testh5dump.sh.in for ( note : to create testh5dump.sh , one must redo ./configure; this detects the availability of filters and generates testh5dump.sh accordingly) 1) storage layout 2) fill value 3) print reference with path 4) print strings with new lines 5) filters Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r8639] Purpose:Quincey Koziol2004-06-091-1/+1
| | | | | | | | | | | | Code optimization Description: Call malloc() instead of calloc() for data structure that we completely initialize. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel
* [svn-r8638] Purpose:Xuan Bai2004-06-091-0/+0
| | | | | | | | | | | | | | | | | | | | | Update Description: 1. Update Windows project files as Quincey Koziol renamed several files in CVS. 2. Update the hdf5 test batch files. Solution: 1. Quincey renamed the following files in CVS: H5Fcompact.c -> H5Dcompact.c H5Fcontig.c -> H5Dcontig.c H5Fistore.c -> H5Distore.c H5Fseq.c -> H5Dseq.c hdf5, hdf5dll, and hdf5_cf90stub project files were updated to reflect the change. 2. H5dump, h5diff, h5ls, h5import, and h5repack test batch files were updated. Now the output from these batch files will show whether each test passes or fails. Platforms tested: Windows XP/Visual C++ 6.0 Misc. update:
* [svn-r8636] Purpose:Quincey Koziol2004-06-091-37/+65
| | | | | | | | | | | | Code optimization Description: Don't allocate conversion buffer larger than the user's buffer. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel too minor to require h5committest
* [svn-r8635] Purpose:Quincey Koziol2004-06-091-1/+1
| | | | | | | | | | | Bug fix Description: Correct path to new testh5dump.sh, now that it's generated. Platforms tested: FreeBSD 4.10 (sleipnir) w & w/o srcdir Too minor to require h5committest
* [svn-r8632] Purpose:Quincey Koziol2004-06-091-2/+10
| | | | Update release notes
* [svn-r8630] Purpose:Quincey Koziol2004-06-091-1/+0
| | | | | | | | | | | | | | | | | Bug fix Description: Correct potential file corruption from mis-setting the metadata accumulator address. (Bugfix contributed by Sean Monner <seanm@quadrus.com>) Solution: When the new metadata overlaps with the end of the metadata accumulator and the accumulator grows in size, don't reset the address of the accumulator, since it hasn't moved. Platforms tested: FreeBSD 4.9 (sleipnir) too minor to require h5committest
* [svn-r8627] Purpose:Quincey Koziol2004-06-094-3/+34
| | | | | | | | | | | | Update shell scripts Description: Switch to generating the testh5dump.sh script at configure time, so we can determine which filters are available to test. Platforms tested: FreeBSD 4.9 (sleipnir) too small to require h5committest
* [svn-r8625] Purpose:Quincey Koziol2004-06-082-4/+38
| | | | | | | | | | | | | | | Code optimization Description: Avoid pushing errors on error stack when an object is not found in a B-tree. Sometimes we are just checking if the object exists before we insert it into the B-tree and the higher levels in the library should be responsible for determining if not finding the object in B-tree is really an error. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel too minor to require h5committest
* [svn-r8623] Purpose:Quincey Koziol2004-06-081-6/+17
| | | | | | | | | | | | | Code optimization Description: Use default dataset transfer property list for internal metadata I/O operations when parallel I/O is disabled. This avoids multiple copies of the properties being made when the information is not needed. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) w/parallel)
* [svn-r8622] Purpose:Pedro Vicente Nunes2004-06-0752-1649/+2977
| | | | | | | | | | | | | | | | | | | | | | | | | h5dump new version Description: added the changes already made for 1.6 support for dumping of 1) filters 2) storage layout 3) fill value 4) comments 5) superblock 6) file contents 7) array indices Solution: Platforms tested: linux solaris AIX Misc. update:
* [svn-r8620] Snapshot version 1.7 release 27HDF Admin2004-06-067-16/+21
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* [svn-r8618] Purpose:Quincey Koziol2004-06-057-444/+576
| | | | Fix makefiles, dependencies & manifest after source file rename.
* [svn-r8616] Purpose:Quincey Koziol2004-06-054-4526/+0
| | | | | | | | Rename these files Description: Since these files contain functions that are part of the dataset information now, rename them to H5D<foo>.c
* [svn-r8614] Purpose:Quincey Koziol2004-06-052-3/+7
| | | | | | | | | | | | | | | Refactor code Description: Move chunk and contiguous cached raw data from file information to dataset information. This simplifies a number of internal interfaces, aligns the code with it's purpose better and should allow more optimizations to the chunked data I/O performance. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) h5committest
* [svn-r8613] Purpose:Quincey Koziol2004-06-0521-2132/+2146
| | | | | | | | | | | | | | | | | Refactor code Description: Move chunk and contiguous cached raw data from file information to dataset information. This simplifies a number of internal interfaces, aligns the code with it's purpose better and should allow more optimizations to the chunked data I/O performance. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.10 (sleipnir) h5committest Misc. update:
* [svn-r8611] Purpose: Update document.Raymond Lu2004-06-031-0/+2
| | | | Misc. update: Update information about opaque datatype bug fix.
* [svn-r8609] Purpose: bug fixRaymond Lu2004-06-031-0/+1
| | | | | | | Description: internal function opaque_check didn't have prototype. Platforms tested: no test needed for such a simple change.
* [svn-r8606] Purpose:Xuan Bai2004-06-021-0/+0
| | | | | | | | | | | | | | | | | | | | | Update and Optimization. Description: Update source codes into Windows workspace. Optimized the dumptest and deleteline batch files. Solution: 1. Added H5DTest.c and H5Dpkg.h to the sourde and header files of hdf5 and hdf5dll projects. 2. Removed H5RefCounter.cpp and H5RefCounter.h from hdf5_cpp and hdf5_cppdll projects. 3. Updated deleteline batch file. Compared with the former version, the current batch file running time is reduced greatly and the output from the deleteline batch file looks much better. 4. Updated dumptest batch file to match with the new dump tests added by Prdro Vicente under Unix. The output from dumptest will show whether the tests passed or failed, while the former version can only show whether there are any difference between the expected and actual output files with fc command. Platforms tested: Windows XP/Visual Studio C++ 6.0 and .Net. Misc. update:
* [svn-r8605] *** empty log message ***Raymond Lu2004-06-021-5/+51
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* [svn-r8604] Purpose: bug fixRaymond Lu2004-06-021-3/+7
| | | | | | | | | Description: For opaque datatype, if tag isn't defined, some operations will have trouble because the tag string is null. Solution: Initialize the tag string to empty string after the opaque type is created. Platforms tested: h5committest
* [svn-r8603] Purpose:Quincey Koziol2004-06-021-3/+0
| | | | Remove the C++ files that were removed from the repo.
* [svn-r8602] Purpose:Quincey Koziol2004-06-0133-1883/+1603
| | | | | | | | | | | Code update Description: Update C++ wrappers to use new ID reference counting mechanisms. Platforms tested: FreeBSD 4.9 (sleipnir) w/C++ Too focused to require h5committest
* [svn-r8600] Purpose:Quincey Koziol2004-05-3116-320/+587
| | | | | | | | | | | | | Code optimization Description: Don't recompute the internal index value for looking up the chunk in the hash table, just use the value already computed from iterating through the chunks. Platforms tested: Solaris 2.7 (arabica) FreeBSD 4.9 (sleipnir) w/parallel
* [svn-r8596] Purpose:MuQun Yang2004-05-281-5/+0
| | | | | | | | | | | | | | | bug fix Description: Currently h5dump test on windows won't separate error form standard output; which shows at function error_message. A #ifdef WIN32 macro at this file make stderr to be the same as stdout on windows. Solution: Separate standard error from standard output. Platforms tested: windows xp VS 6.0(by xuan bai), no needs to test on other platforms Misc. update:
* [svn-r8595] Purpose:Binh-Minh Ribler2004-05-2819-85/+119
| | | | | | | | | | | | | | Add/Improve documentation Description Added doxygen documentation to H5PredType.cpp and made minor changes to the others for either correction or clarification. Platforms: SunOS 5.7 (arabica) Linux 2.4 (eirene) Misc. update:
* [svn-r8594] Purpose: new testRaymond Lu2004-05-272-6/+100
| | | | | | | Description: Add null dataset and attribute tests for Fortran. Platforms tested: verbena pgf90(only Fortran test is involved).
* [svn-r8593] Purpose:Binh-Minh Ribler2004-05-275-49/+195
| | | | | | | | | | | | | | | | | | Add more C++ wrapper and documentation - incrementally check-in Description Added another overloaded constructor to StrType. Added doxygen documentation to H5IdComponent.cpp. Corrected some comments. This is an incremental check-in to preserve the code, corresponding tests will follow in a few weeks. Platforms: SunOS 5.7 (arabica) Linux 2.4 (eirene) Misc. update:
* [svn-r8590] Purpose:Quincey Koziol2004-05-2732-605/+1372
| | | | | | | | | | | | | | | | | | | | | Code optimization & bug fix Description: When dimension information is being stored in the storage layout message on disk, it is stored as 32-bit quantities, possibly truncating the dimension information, if a dimension is greater than 32-bits in size. Solution: Fix the storage layout message problem by revising file format to not store dimension information, since it is already available in the dataspace. Also revise the storage layout data structures to be more compartmentalized for the information for contiguous, chunked and compact storage. Platforms tested: FreeBSD 4.9 (sleipnir) w/parallel Solaris 2.7 (arabica) h5committest
* [svn-r8589] Purpose: bug fixRaymond Lu2004-05-271-0/+1
| | | | Misc. update: update MANIFEST for adding h5diff_81.txt
* [svn-r8588] Purpose:Binh-Minh Ribler2004-05-2710-70/+433
| | | | | | | | | | | | | | | | | | | Add C++ wrappers - incrementally check-in Description Added wrapper for these C APIs: H5Rcreate H5Rget_obj_type H5Rget_region This is an incremental check-in to preserve the code, corresponding tests will follow in a few weeks. Platforms: Linux 2.4 (eirene) I'm checking the code out and test on arabica too. Misc. update:
* [svn-r8587] Purpose:Binh-Minh Ribler2004-05-262-0/+41
| | | | | | | | | | | | | | | Add C++ wrappers - incrementally check-in Description Added wrapper for these C APIs: H5Dget_offset H5Dget_space_status Platforms: SunOS 5.7 (arabica) Linux 2.4 (eirene) Misc. update:
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