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* Fix shadowed typeAllen Byrne2020-04-131-3/+3
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* TRILAB-192 - cleanup edits and match CMake CXX to autotoolsAllen Byrne2020-04-135-88/+200
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* Add missing " and update function calls incorrectlyLarry Knox2020-04-123-27/+27
| | | | | | namedload_gcc_arguments. Commit changes to gnu-cxxflags to remove unmatched " and to gnu-fflags to not add C warnings flags to H5_FCFLAGS.
* TRILAB-192 update LTparse filesAllen Byrne2020-04-073-663/+821
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* TRILAB-192 - merge changes from developAllen Byrne2020-04-0747-1259/+1047
| | | | Single source, config files, for warnings for both autotools and CMake. Update CMake libraries, tools, tests to use correct flags.
* Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_12)Allen Byrne2020-04-052-350/+400
|\ | | | | | | | | * commit 'db3f89ce9dc7eae17cb15d39e402112c3fbd2955': Merge pull request #2461 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/dtype_close_on_error to develop
| * Merge pull request #2488 in HDFFV/hdf5 from ↵Vailin Choi2020-04-032-350/+400
| |\ | | | | | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/112_dtype_close_on_error to hdf5_1_12 * commit 'b4d06a7e80d62b93e64abd44425f90ec1e15df81': Merge pull request #2461 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/dtype_close_on_error to develop
| | * Merge pull request #2461 in HDFFV/hdf5 from ↵Vailin Choi2020-04-022-350/+400
| |/ | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/dtype_close_on_error to develop * commit 'afdcac28b85d690eebc80ab568fa5266081baaaa': A fix in the cleaning up code for datatype when datatype initialization via H5D__init_type() fails. This is triggered by the tests for revised references when the libver bounds setting does not allow version 4 datatype message to be created. The test failure is abort core dumped. This is due to the datatype initialization fails before the datatype ID is registered. The datatype cleanup code should provide for the above situation. The code to fix the problem is the same as what is done in H5D__open_oid().
* | Update release note for CMake warningsAllen Byrne2020-04-031-0/+2
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* | Correct extra flagsAllen Byrne2020-04-011-2/+2
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* | TRILAB-192 merging warnings changes from developAllen Byrne2020-03-3067-243/+701
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* | Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_12)Allen Byrne2020-03-2910-211/+585
|\ \ | |/ | | | | | | | | | | | | | | | | * commit '16b909a7488d8288206dd0bb7cf9ef7036d7f543': Update release notes about H5get_alloc_stats() and H5get_free_list_sizes(). Was checking the wrong compiler macro. Correct failure when allocation tracking are disabled. Remove VCS merge conflict Revise API for H5get_alloc_stats() to take a struct instead of separate values. Add routines to query the library's free list sizes and allocation stats.
| * Merge pull request #2468 in HDFFV/hdf5 from alloc_stats_1_12 to hdf5_1_12Quincey Koziol2020-03-2810-211/+585
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '0f92c0e908454bb025361060d89de805e4829302': Update release notes about H5get_alloc_stats() and H5get_free_list_sizes(). Was checking the wrong compiler macro. Correct failure when allocation tracking are disabled. Remove VCS merge conflict Revise API for H5get_alloc_stats() to take a struct instead of separate values. Add routines to query the library's free list sizes and allocation stats.
| | * Update release notes about H5get_alloc_stats() and H5get_free_list_sizes().Quincey Koziol2020-03-251-0/+3
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| | * Was checking the wrong compiler macro.Quincey Koziol2020-03-251-1/+1
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| | * Correct failure when allocation tracking are disabled.Quincey Koziol2020-03-241-0/+12
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| | * Remove VCS merge conflictQuincey Koziol2020-03-241-6/+0
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| | * Revise API for H5get_alloc_stats() to take a struct instead of separate values.Quincey Koziol2020-03-236-99/+64
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| | * Add routines to query the library's free list sizes and allocation stats.Quincey Koziol2020-03-239-211/+611
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* | TRILAB-24 use CheckStructHasMember CMake moduleAllen Byrne2020-03-273-88/+19
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* Merge pull request #2454 in HDFFV/hdf5 from ↵Vailin Choi2020-03-195-5/+23
|\ | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/v112_seg_fault_sel_compat to hdf5_1_12 * commit '3b2db5eb19594fa44357e63e36f3b294fbae463d': Merge pull request #2451 in HDFFV/hdf5 from ~VCHOI/my_third_fork:bugfix/develop_seg_fault_sel_compat to develop
| * Merge pull request #2451 in HDFFV/hdf5 from ↵Vailin Choi2020-03-165-5/+23
|/ | | | | | | ~VCHOI/my_third_fork:bugfix/develop_seg_fault_sel_compat to develop * commit '81b1ed4e1724b8a6a731ab2b8fb03234a8b49d15': Fix issues when deserializing point/all/none selection with version beyond the library's supported version: (1) Verify the decoded version before proceeding further with deserialization (2) Close the dataspace if errors occurred after opening the dataspace
* Merge pull request #2448 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_12 to ↵Larry Knox2020-03-121-1/+1
|\ | | | | | | | | | | | | hdf5_1_12 * commit 'fe1f4d031e3aeb2702639c2b7e11f76811309f48': Add \d to list of characters allowed after - in versions.
| * Add \d to list of characters allowed after - in versions.Larry Knox2020-03-121-1/+1
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* Merge pull request #2437 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_12 to ↵Allen Byrne2020-03-041-2/+2
|\ | | | | | | | | | | | | hdf5_1_12 * commit 'e3c555b9034a63d8ae6e079d44b44552e33a0161': Remove system command from valgrind reports
| * Remove system command from valgrind reportsAllen Byrne2020-03-021-2/+2
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* Merge pull request #2425 in HDFFV/hdf5 from ~JAKE.SMITH/hdf5:hdf5_1_12 to ↵Jake Smith2020-03-011-2/+2
|\ | | | | | | | | | | | | | | hdf5_1_12 * commit '46f0de82c7674a28b08e4da3b0149c793b762203': Fix improper signing key null check. (HDFFV-11015) Add updates from develop, PR 1958.
| * Fix improper signing key null check. (HDFFV-11015)Jacob Smith2020-02-281-2/+2
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| * Merge branch 'hdf5_1_12' of ↵Jacob Smith2019-10-11157-5762/+15516
| |\ | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~jake.smith/hdf5 into hdf5_1_12
| * | Add updates from develop, PR 1958.Jacob Smith2019-10-111-24/+65
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* | | Merge pull request #2429 in HDFFV/hdf5 from ~KMU/hdf5:bugfix/type_cast_12 to ↵Kimmy Mu2020-02-291-2/+2
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_12 * commit '7e6fd7e4adf70a40deb0d90e3e9b55d663832a43': revert type cast
| * | | revert type castkmu2020-02-281-2/+2
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* | | | Merge pull request #2421 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:hdf5_1_12 to ↵Scot Breitenfeld2020-02-282-6/+25
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_12 * commit 'b9909de9abf656b0a411bfbd3b2e9a7403886fa8': Fixed configure issue when building HDF5 with NAG Fortran 7.0. Fixed issue building HDF5 with NAG Fortran 7.0.
| * \ \ \ Merge branch 'hdf5_1_12' of ↵M. Scot Breitenfeld2020-02-285-37/+21
| |\ \ \ \ | |/ / / / |/| | | | | | | | | ssh://bitbucket.hdfgroup.org:7999/~brtnfld/hdf5_msb into hdf5_1_12
* | | | | Merge pull request #2420 in HDFFV/hdf5 from revise_get_offset_1_12 to hdf5_1_12Quincey Koziol2020-02-285-37/+21
|\ \ \ \ \ | |_|/ / / |/| | | | | | | | | | | | | | * commit '9ac3f9526aeb0191eb36fc9eec4c63fa72a13697': Switch the 'get offset' operation from a dataset 'get' callback to a [native] dataset 'optional' operation.
| * | | | Switch the 'get offset' operation from a dataset 'get' callback to a [native]Quincey Koziol2020-02-285-37/+21
|/ / / / | | | | | | | | | | | | dataset 'optional' operation.
| * | | Fixed configure issue when building HDF5 with NAG Fortran 7.0.M. Scot Breitenfeld2020-02-281-0/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | HDF5 now accounts for the addition of half-precision floating-point in NAG 7.0 with a KIND=16. (MSB - 2020/02/28, HDFFV-11033)
| * | | Merge branch 'hdf5_1_12' of ↵M. Scot Breitenfeld2020-02-281-215/+3
| |\ \ \ | |/ / / |/| | | | | | | ssh://bitbucket.hdfgroup.org:7999/~brtnfld/hdf5_msb into hdf5_1_12
* | | | Merge pull request #2418 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_12 to ↵Larry Knox2020-02-281-215/+3
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_12 * commit 'ec6162f7bbd77b411bbefe66f5cc6a06e6094e0f': One more change to RELEASE.txt. Clear RELEASE.txt HDF5 1.12.0 entries.
| * | | | One more change to RELEASE.txt.Larry Knox2020-02-281-9/+1
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| * | | | Clear RELEASE.txt HDF5 1.12.0 entries.Larry Knox2020-02-281-207/+3
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| * | | Fixed issue building HDF5 with NAG Fortran 7.0.M. Scot Breitenfeld2020-02-281-6/+19
|/ / / | | | | | | | | | | | | | | | Accounted for the additon of half precision floating-point with a KIND=16. HDFFV-11033
* | | Merge pull request #2416 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_12 to ↵Larry Knox2020-02-282-2/+2
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_12 * commit '2c43125dbe01e2c3c1f8a05ba38d65aad0e9d229': Modify expression to match mpicc built with Intel as intel compiler, not gcc.
| * | | Modify expression to match mpicc built with Intel as intel compiler, notLarry Knox2020-02-272-2/+2
|/ / / | | | | | | | | | gcc.
* | | Merge pull request #2413 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_12 to ↵Allen Byrne2020-02-271-2/+3
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_12 * commit 'b551bee9cb2440d4b32d0a58e87e8047b7fef7f4': Add java version and reference libsettings
| * | | Add java version and reference libsettingsAllen Byrne2020-02-271-2/+3
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* | | Merge pull request #2410 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_12 to ↵Larry Knox2020-02-2716-267/+256
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_12 * commit '1e5d4257c4e88a9368899798672bf3e3cc37971b': Update examples and fix version references Move MODEL check to before usage in CTestScript.cmake.
| * \ \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_12)Allen Byrne2020-02-2615-194/+480
| |\ \ \ | |/ / / |/| | | | | | | | | | | * commit '6bf98769c1f264ad414c949c917ff61cdb16f35a': Merge pull request #2325 in HDFFV/hdf5 from ~DYOUNG/werror:h5t_copy to develop
* | | | Merge pull request #2403 in HDFFV/hdf5 from ~DYOUNG/werror:h5t_copy-for-1.12 ↵David Young2020-02-2615-194/+480
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to hdf5_1_12 * commit 'a3462bf164ef3b00e863de64a2a547c76f7adcd4': Merge pull request #2325 in HDFFV/hdf5 from ~DYOUNG/werror:h5t_copy to develop
| * | | | Merge pull request #2325 in HDFFV/hdf5 from ~DYOUNG/werror:h5t_copy to developDavid Young2020-02-2515-194/+480
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Merged per discussion with Elena. * commit '3f903a441ad84001ea66589728bd8b036b6fdfca': Take out the temporary performance tests. Make calls through a function pointer. Use the same number of arguments, always. Increase iterations, provide a baseline for no-op, simplify the overhead case a bit. Temporarily add some code that measures the time to run the simplest possible H5T__copy_all()-like routine 10 million times and then measures the version with FUNC_ENTER_STATIC/_LEAVE_NOAPI and a HGOTO_ERROR() statement. H5T_copy() constification plus Quincey's contributions.
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