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* Merge CMake,doxygen changes from develop,1.10 branches (#3578)Allen Byrne2023-09-2643-67/+2004
| | | | | | | | | | | * Merge CMake,doxygen changes from develop,1.10 branches * revert incorrect option in AT TS build * Use variable for ignore-eol usage. * Add last_test depends logic * Just print status on CMake below 3.14
* Revert the removal of java class H5GroupInfo (#3548)Allen Byrne2023-09-253-0/+190
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* Switched from UNTESTED to UNT (#3569)bmribler2023-09-211-5/+6
| | | | | | | | * Switched from UNTESTED to UNT This makes the lines shorter to keep CVE numbers on one line instead of breaking them into three lines. * Realligned the columns
* Cherry-pick of CVE fixes from 1.10 (#3490)Dana Robinson2023-09-039-98/+175
| | | | | | | | | * CVE-2016-4332 * CVE-2018-11202 * CVE-2018-11205 * CVE-2018-13866 * CVE-2018-13867 * CVE-2018-13871 * CVE-2018-15671
* Fix links in RELEASE.txt (#3498)bmribler2023-09-031-3/+3
| | | | | | | | * Fixed incorrect links Updated documentation link to the new documentation Corrected the Software Changes link, it was the Developer's Guide. * Used a more appropriate page
* Add the 1.12 CVE matrix file (#3497)bmribler2023-09-031-0/+74
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* Correct dimensions in java test (#3485)Allen Byrne2023-09-012-2/+2
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* [1.12 Merge] Fix serial to parallel chunked dataset file space allocation ↵jhendersonHDF2023-09-015-10/+333
| | | | bug (#3394) (#3476)
* [1.12 Merge] Fix assertion failure during file close on error (#3461)jhendersonHDF2023-09-018-41/+128
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* Fix valgrind warning about write of uninitialized bytes in ScaleOffset ↵jhendersonHDF2023-09-011-1/+7
| | | | filter (#3390) (#3462)
* Fix another build folder name (#3411)Allen Byrne2023-08-231-3/+3
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* Update build script to match change in presets (#3409)Allen Byrne2023-08-221-25/+25
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* Merge/update CMake, presets,java and tools (#3393)Allen Byrne2023-08-21238-3388/+5413
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* Fix loading plugin fails with missing directory GH issue #3248 (#3324)Allen Byrne2023-08-026-30/+68
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* sync bin dir with develop (#3270)Allen Byrne2023-07-2513-54/+41
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* Merge changes from develop (#3238)Allen Byrne2023-07-186-404/+136
| | | | | | | * Merge changes from develop * Add last snapshot name * Merge bbrelease into release
* Adjust presets timeout and fix build script VS versions (#3217)Allen Byrne2023-06-302-8/+8
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* Hdf5 1 12 release action (#3199)Allen Byrne2023-06-307-129/+241
| | | | * Update actions for release option, fix branch for daily build * Scheduled workflows run on latest commit on the develop
* Add missing space in zip command (#3169)Allen Byrne2023-06-221-1/+1
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* Remove duplicate code (#3161)Allen Byrne2023-06-201-23/+0
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* Update github files/workflow from develop (#3155)Allen Byrne2023-06-193-5/+32
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* Add java options to build scripts (#3137)mattjala2023-06-154-3/+18
| | | | | | | | | | | | | | | | | Previously, cmakehdf5 turned on compiling of the java interface by default due to a value set in cacheinit.cmake. Now, consistent with how Fortran and CPP interfaces are handled, the script overwrites this default value to disable the libraries, fixing #2958. I also implemented the --enable-java/--disable java options for cmakehdf5, and -java for buildhdf5. Allen said these scripts should mention that compilers are to be specified in environment variables, but missing compilers causes errors at the CMake level, and CMake's error messages are already pretty informative (See the one in #2958 about JAVA_COMPILER).
* Merges from develop/1.14 (#3118)Allen Byrne2023-06-1542-567/+320
| | | | | | | | | | | | * Fix release action that allows files to be uploaded. Add autotools h5copy help test. Update cmake tools.cmake file for clang-tidy. CMake build is missing H5FDsubfiling.h macros improved for configure output capture. Remove obsolete files * Revert parallel config with TS * Fix doxygen warnings
* Bring MD cache uthash tag list from develop (#3099)Dana Robinson2023-06-123-216/+75
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* Adds a release note for Autoconf 2.71 bump (#3092)Dana Robinson2023-06-101-1/+24
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* Minor normalization w/ develop (#3073)Dana Robinson2023-06-0712-54/+75
| | | | | | | Mostly bin directory * bin/release uses sha256 * bin/h5vers whitespace changes * bin/genparser warning fixes + HL changes * Add bin directory for make distclean
* Add autotools generated files to codespell (#3075)Larry Knox2023-06-071-2/+2
| | | | | Add autotools files for codespell to skip in order to avoid codespell failing for misspelled words in files generated by autotools when running autogen.sh.
* Update uthash and move to H5private.h (#3074)Dana Robinson2023-06-074-86/+57
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* Remove unused cruft from bin dir (#3071)Dana Robinson2023-06-0713-593/+5
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* Bring HDF-EOS5 and netCDF actions from develop (#3064)Dana Robinson2023-06-072-0/+103
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* Bring gcc/clang attribute and warning macros over (#3063)Dana Robinson2023-06-072-47/+89
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* Move config/cmake_ext_mod content to config/cmake (#3062)Dana Robinson2023-06-0750-846/+821
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* Bring key changesets from develop (#3052)Dana Robinson2023-06-0612-39/+85
| | | | | | | | | * Bump GitHub action macOS version to 13 (#2999, #3009) * Bump GitHub action gcc/g++/gfortran version to 12 (#3015) * Bump Autoconf version to 2.71 (#2944) * Fix missing h5_reset() calls in accum test (#3001) * Only run ttsafe in GitHub thread-safe actions (#2777) * Fix Java debug asserts on Windows (#3012) * Fix long double dt_arith bug on macOS (#3038)
* Update actions and change defaults of compression (fix vars) (#3043)Allen Byrne2023-06-0520-201/+367
| | | | | | | | | * Update actions and change defaults of compression (fix vars) * disable TS and parallel * remove parallel for TS * Correct list of default options
* Remove most unused options which are defaulted #2998 (#3046)Allen Byrne2023-06-0517-923/+30
| | | | | | | * Remove most unused options which are defaulted #2998 * Correct doxygen predefined list * Correct doxygen list of predefineds
* Hdf5 1 12 dt action (#2965)Allen Byrne2023-05-184-4/+354
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* Add h5copy help test and verify consistency (#2903)Allen Byrne2023-05-189-50/+142
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* Update 1.12 release_docs/README_HPC (#2976)Larry Knox2023-05-181-14/+12
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* Prevent buffer overrun in H5S_select_deserialize (#2956)mattjala2023-05-1812-213/+560
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* Update action uses version (#2939)Allen Byrne2023-05-121-1/+1
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* Fix CMake generator expression syntax (#2940)Allen Byrne2023-05-1211-38/+57
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* Add configure_file commands for batch (#2882)Allen Byrne2023-05-031-0/+8
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* Correct usage of CMAKE_BUILD_TYPE (#2868)Allen Byrne2023-05-023-23/+20
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* Correct compression install files (#2847)Allen Byrne2023-04-302-8/+22
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* Add bug note to H5Dget_space_status documentation (#2788) (#2836)jhendersonHDF2023-04-301-0/+14
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* Add support for CMakePresets and fix example download (#2819)Allen Byrne2023-04-306-12/+893
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* Clean up memory allocated when reading messages in H5Dlayout on error (#2811)glennsong092023-04-302-5/+26
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* Fix v1 object header gap bug in H5Ocopy (#2785) (#2833)jhendersonHDF2023-04-303-2/+83
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* H5Spoint.c: Comment fix (#2782)Dave Allured2023-04-201-1/+1
| | | Comment should be "point", not "hyperslab".
* Add no subsets option to h5diff like h5dump (#2760)Allen Byrne2023-04-1917-270/+205
| | | * reorder argument in alpha order
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