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* [svn-r13074] Description:Quincey Koziol2006-12-1916-462/+948
| | | | | | | | | | | | | | | | | Add support for opening attributes in dense and/or shared storage by index. Move routines for building and operating on tables of attributes into separate source module. Fix bug where reverting from "dense" to "compact" storage would 'unshare' attributes. Minor code cleanups, etc. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13073] Description:Quincey Koziol2006-12-183-18/+17
| | | | | | | | Verify H5Aget_num_attrs() works correctly for new object header format. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13072] Description:Quincey Koziol2006-12-186-83/+207
| | | | | | | | | Push support for shared attributes into more dark corners of the "dense" attribute storage support. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13070] Added shared message example program in hdf5/examples.James Laird2006-12-185-5/+332
| | | | | | Also cleaned up one old API routine in H5Ppublic that isn't used. Tested on smirom and kagiso. More testing to follow.
* [svn-r13068] Ran bin/reconfigure. Some of the scripts have been changed or ↵James Laird2006-12-1862-462/+470
| | | | | | | | | haven't been run in a while, so many of the source files were updated with tracing macros, etc. No code changes by me. Tested on kagiso and smirom.
* [svn-r13067] Description:Quincey Koziol2006-12-187-22/+419
| | | | | | | | | | | | | | Add [quite] limited ability to update (ie. write) data for objects in fractal heap. Limited to just updating objects in managed heap blocks (i.e. not 'tiny' or 'huge' objects) and must be updated with data of the same length as the object in the heap. Updating objects in compressed heaps does work though [as long as the data isn't 'tiny' or 'huge']. Needed for changing the data value or the name of an attribute that is stored in dense or shared storage. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13065] Added support for copying shared messages (including turning ↵James Laird2006-12-1517-332/+498
| | | | | | | | | | | | unshared messages to shared messages and vice versa). Extended objcopy test to test all "permutations" of shared/unshared and new/old group format. If this proves to take a long time to test, I'll go back and have it run fewer tests when HDF5_TEST_EXPRESS is enabled. Tested on smirom, kagiso, copper, and Windows.
* [svn-r13064] Pedro Vicente Nunes2006-12-1418-381/+566
| | | | | | | | | | | | | | | | | | | Fix several bugs 1) the parsing of subsetting was using atoi to convert the parameter to an int, which caused problems for numbers greater that int. Substitute with atof 2) the printing of indices in the subsetting case was not being done. Solution: calculate the element position at the start of the subsetting using the algorythm Given an index I(z,y,x) its position from the beginning of an array of sizes A(size_z, size_y,size_x) is given by Position of I(z,y,x) = index_z * size_y * size_x + index_y * size_x + index_x And pass that position to the function that dumps data, h5tools_dump_simple_data. 3) several index counters were declared as int, use hsize_t instead 4) modified the test generation program so that it includes test cases for subsetting of 1d, 2d, 3d, and 4d arrays and add these tests to the shell script
* [svn-r13063] Cleaned up some memory issues when copying, in preparation for ↵James Laird2006-12-145-27/+15
| | | | | | | | | checking in code to copy shared messages. Should be fewer memory leaks and fewer "uninitialized memory reads." Tested on kagiso, smirom, and Windows.
* [svn-r13062] Albert Cheng2006-12-141-6/+10
| | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix. Description: Test failed when core and multi VFD is used. SOlution: Failure was because the test file was created with the specified VFD access property but later reopened by default access. That won't work for VFDs such as multi that produced files that are incompatible with the default sec2 file driver. Fixed it by using the same VFD access property when it reopens the same test file. However, it still fails for the core VFD which does not create any real file. It is meaningless to try to reopen its file. Fixed it by adding core to the incompatible list of VFDs so that it would skip the test. Split is already coded as incompatible VFD but I don't understand why it is incompatible in this case. Removed it from the incompatible list. Tested Platforms: Copper in which the daily test failed.
* [svn-r13058] Description:Quincey Koziol2006-12-138-89/+74
| | | | | | | | | | | Clean up some shared message operations and other minor tweaks, in the process of trying to solve the messy way that shared object header messages are implemented in general (not James' work - which is fine :-) Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) AIX/32 5.? (copper)
* [svn-r13057] Added a copy_file callback for datatype messages. This sets ↵James Laird2006-12-121-1/+45
| | | | | | | | | their location in the destination file, fixing a bug in the (not yet checked-in) shared message copying changes. Tested on kagiso, smirom, copper, and Windows.
* [svn-r13056] Description:Quincey Koziol2006-12-128-76/+244
| | | | | | | | | | | | | | Add H5SM_type_shared() internal routine to determine if a particular type of header message is sharable in a file. Correct off-by-one error in computing B-tree record size for densely stored attributes' name index. Further progress toward supporting shared attributes in dense storage. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13055] update library and DLL project files on windows.MuQun Yang2006-12-122-0/+120
| | | | All C tests get passed with VS6.0.
* [svn-r13052] Fixed a bug that occured while eliminating "gaps" in object ↵James Laird2006-12-121-0/+7
| | | | | | | | headers when the gap came immediately before a null message. Tested on smirom, kagiso, and copper.
* [svn-r13051] Description:Quincey Koziol2006-12-123-45/+29
| | | | | | | | Minor code neatening, before making snapshot... Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13050] Purpose: Code cleanupBinh-Minh Ribler2006-12-121-15/+15
| | | | | | | | | | Description: Fixed several mismatched types causing daily test to fail on tg-login. Platforms tested: Linux 2.6 (kagiso) - just to make sure no ill effects. I cannot login to tg-login3 so am going to watch for it on daily test tonight.
* [svn-r13048] Description:Quincey Koziol2006-12-122-41/+78
| | | | | | | | | | | | Set up tests for next phase of testing dense attribute operations, with shared attributes. Other minor code cleanups... Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13047] Description:Quincey Koziol2006-12-128-78/+232
| | | | | | | | | | | | | | Add "attribute exists" internal routine to make verifying that an attribute with the same name doesn't already exist easier. Tweak "trace" script to produce more whitespace in H5TRACE macros, in order to make them easier to read. Minor other whitespace cleanups Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13046] Description:Quincey Koziol2006-12-122-64/+62
| | | | | | | | Minor editing & code cleanups. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13045] Description:Quincey Koziol2006-12-1231-477/+1231
| | | | | | | | | | | | | | Switch from using H5L_index_t/H5L_INDEX_<foo> to H5_index_t/H5_INDEX_<foo> in order to accommodate indices on aspects of attributes as well as links. Add basic support for deleting attributes in dense storage (needs more support/tests for shared attributes in dense storage still). Misc. cleanups, etc. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13044] Updated for the new SVN server location.HDF Tester2006-12-111-1/+1
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* [svn-r13042] Pedro Vicente Nunes2006-12-1121-196/+373
| | | | | added a size of array information when printing differences modified print_pos and diff_datum for having one extra argument *dims
* [svn-r13041] Description:Quincey Koziol2006-12-1112-708/+1235
| | | | | | | | | | | Migrate "internalish" attribute operations into new source code file. Add test & basic support for opening attributes in dense storage (shared attributes not tested or supported yet). Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13039] Purpose: Add testBinh-Minh Ribler2006-12-111-0/+55
| | | | | | | | | | Description: Added test_string_attr to partially test recent fix of Attribute::read. Platforms tested: AIX 5.1 (copper) Linux 2.6 (kagiso) SunOS 5.8 64-bit (sol)
* [svn-r13038] Purpose: Fixed user reported bugBinh-Minh Ribler2006-12-112-6/+12
| | | | | | | | | | | | | | | Description: In Attribute::read, H5Aread malloc's memory for the read data buffer, so Attribute::read shouldn't allocate the buffer, but needs to deallocate with HDfree. Fixed a typo in H5StrType.cpp, should pass PredType::C_S1 to "copy" instead of H5T_C_S1. Platforms tested: AIX 5.1 (copper) Linux 2.6 (kagiso) SunOS 5.8 64-bit (sol)
* [svn-r13037] Description:Quincey Koziol2006-12-085-120/+209
| | | | | | | Move attribute creation code out of H5Omessage.c and into H5Oattr.c Tested on: FreeBSD/32 4.11 (sleipnir)
* [svn-r13036] Description:Elena Pourmal2006-12-081-4/+4
| | | | | | | VMS maintenance: brought command file up-to-date. Platforms tested: VMS server at Boeing
* [svn-r13035] Fixed a small problem in Line 782 - buf[6] should be set to 0, too.Raymond Lu2006-12-081-0/+1
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* [svn-r13034] Description:Quincey Koziol2006-12-087-18/+29
| | | | | | | | Take out separate memory type in the file for SOHM objects and create aliases for existing memory types for SOHM use. Tested on: FreeBSD/32 4.11 (sleipnir)
* [svn-r13033] Pedro Vicente Nunes2006-12-072-13/+18
| | | | avoid usage to call exit(1), it makes processes to stop in parallel.
* [svn-r13032] Pedro Vicente Nunes2006-12-072-119/+122
| | | | introduced a new macro PDIFF to calculate differences for unsigned types
* [svn-r13031] Pedro Vicente Nunes2006-12-071-1576/+1575
| | | | introduced more ABS macro use
* [svn-r13030] Pedro Vicente Nunes2006-12-071-8/+6
| | | | | | warnings clean ../../../hdf5/tools/h5repack/h5repack_opttable.c:240: warning: passing arg 2 of `aux_tblinsert_layout' as signed due to prototype
* [svn-r13029] Pedro Vicente Nunes2006-12-071-7/+7
| | | | | | | | warnings clean ../../../hdf5/tools/h5repack/h5repack_copy.c:615: warning: passing arg 3 of `print_dataset_info' as `float' rather than `double' due to prototype introduced double precision arithmetic
* [svn-r13028] Description:Quincey Koziol2006-12-0639-369/+2377
| | | | | | | | | | | | | | | | | Add first pass of "dense" attribute storage to objects. Lots of parts of this are stubbed out, but all the tests are passing and I'll work on the corner cases soon. Eliminated several unused parameters from object header message callback routines. Other, miscellaneous code cleanups, etc. (and probably some things I've forgotten about... :-) Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) AIX/32 5.? (copper)
* [svn-r13027] Pedro Vicente Nunes2006-12-062-20/+21
| | | | | | | | fixed warning ../../../hdf5/tools/h5diff/h5diff_common.c: In function `usage': ../../../hdf5/tools/h5diff/h5diff_common.c:346: warning: function might be possible candidate for attribute `noreturn'
* [svn-r13026] Pedro Vicente Nunes2006-12-061-23/+26
| | | | fix some memory allocation problem with info->prefix
* [svn-r13025] Pedro Vicente Nunes2006-12-061-2/+2
| | | | | | compiler warning clean ../../../hdf5/tools/lib/h5tools_ref.c:257: warning: old-style parameter declaration
* [svn-r13024] Pedro Vicente Nunes2006-12-062-11/+13
| | | | | | | | fixed 2 initializations of char* with HDstrdup and HDcalloc info->prefix = HDcalloc(1, 1); fname = HDstrdup(argv[opt_ind]); some were exposed by compiler warnings
* [svn-r13023] Pedro Vicente Nunes2006-12-052-9/+11
| | | | cleaned compiler warnings on hl
* [svn-r13022] Description:Quincey Koziol2006-12-041-5/+13
| | | | | | | | Fix error where message type was being cleared before it was checked. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13021] Cleaned up some mismatched types that were causing errors on ↵James Laird2006-12-043-4/+4
| | | | | | | | copper in 64-bit mode. Tested on copper.
* [svn-r13020] Description:Quincey Koziol2006-12-045-27/+37
| | | | | | | | Make number of attributes tracking in object header prefix "live" Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13019] Description:Quincey Koziol2006-12-045-226/+96
| | | | | | | | | | | Further simplifications and cleanups to object header message code. Also, some changes to the "iterate" routines, in order to not override the return value from the iterator callback routine. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r13018] H5Omessage.c has been added. Updated the windows project files.MuQun Yang2006-12-042-0/+30
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* [svn-r13017] Update windows project files for hdf5 library.MuQun Yang2006-12-042-12/+42
| | | | Tested on windows vs 6.0.
* [svn-r13016] Description:Quincey Koziol2006-12-0431-1553/+1429
| | | | | | | | | | | Finish moving object header message routines into their own source code module, along with renaming them to have "H5O_msg_" prefix... Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) AIX/32 5.? (copper)
* [svn-r13015] Description:Quincey Koziol2006-12-0444-1231/+1315
| | | | | | | | | | | Migrate more object header routines to use the H5O_msg_ prefix and put them into the src/H5Omessage.c code module. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) AIX/32 5.? (copper)
* [svn-r13013] Cleaned up some mismatched types in test/tsohm.c that were causingJames Laird2006-12-031-4/+4
| | | | | | errors on tg-login3. Tested on tg-login3.
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