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* [svn-r14975] Purpose: Add Windows fixes for new Fortran code.Scott Wegner2008-05-1212-384/+537
| | | | | | | | Description: There were a number of small tweaks we needed to make to add the new fortran_1_8 code on Windows. We create new project files, add new source to them, add the test to our test suite, and fix a few typos in the Windows-specific source code. Tested: VS2005 on WinXP
* [svn-r14973] Purpose: Fix bug in H5G_get_name_by_addr where buffer size is ↵Scott Wegner2008-05-121-1/+1
| | | | | | | | | | | less than size of name Description: In the new tests merged from the fortran_1_8 branch, there is a test that fetches a dataset name in a small buffer. The call to H5G_get_name_by_addr wrote an extra byte off the end of the buffer. A simple and sufficient fix is to decrease the buffer size passed to strncmp by 1. This bug was only caught by Visual Studio 2005 with extra debug checks on. Tested: VS2005 on WinXP kagiso
* [svn-r14972] Purpose:Scot Breitenfeld2008-05-121-44/+33
| | | | Corrected the way the total number of errors are summed up.
* [svn-r14971] Purpose:Scot Breitenfeld2008-05-121-3/+235
| | | | Added a test for H5Tget_create_plist_f
* [svn-r14970] Purpose: updated RELEASE.txt documentMike McGreevy2008-05-121-0/+3
| | | | | | | | | | Description: new autotool version information was missing from 1.9 documentation. It was added to 1.8, but I forgot to put it in the trunk when I did that update. It's there now. New versions: Automake 1.10.1, Libtool 2.2.2 Tested: none needed, doc update only.
* [svn-r14969] Purpose: Bug Fix (Bug 1144)Mike McGreevy2008-05-126-18/+82
| | | | | | | | | | | | | Description: Tests in perform directory were never getting run, and h5perf* programs were not being installed. Solution: Added another build option, 'make check-perform', which runs the tests in the perform directory. Also modified the Makefiles in the perform directory to install (with 'make install') h5perf when parallel is enabled, and h5perf and h5perf_serial when parallel is disabled. Tested: kagiso, smirom, linew
* [svn-r14965] Snapshot version 1.9 release 5HDF Tester2008-05-117-18/+18
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* [svn-r14963] Removed dependency on unused routines for the fortranlib_test_1_8Scot Breitenfeld2008-05-091-7/+3
| | | | test program.
* [svn-r14962] Removed dependency on unused routines for the fortranlib_test_1_8Scot Breitenfeld2008-05-091-2/+1
| | | | test program.
* [svn-r14961] Fixed DEC$attributes for windowsScot Breitenfeld2008-05-091-1/+1
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* [svn-r14960] Maintenance: IRIX compiler exposed a problem in one of the new ↵Elena Pourmal2008-05-091-1/+4
| | | | | | APIs. Fixed. Platforms tested: kagiso and UCAR IRIX machine.
* [svn-r14958] Cosmetic changes and fixed integer type mismatch in C routine ↵Scot Breitenfeld2008-05-094-19/+21
| | | | wrapper.
* [svn-r14955] Purpose:Scot Breitenfeld2008-05-081-4/+39
| | | | | | | | | | | | | | * test passing integer constant to subroutine Description: ! -- CHECK PASSING AN INTEGER CONSTANT IN DIFFERENT FORMS -- ! 1) call by passing an integer with the _hsize_t declaration ! 2) call by passing an integer with the INT(,hsize_t) declaration ! 3) call by passing a variable with the attribute hsize_t
* [svn-r14954] re-instated the test_attr_dense_open routine for debuggingScot Breitenfeld2008-05-081-6/+4
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* [svn-r14953] Maintenance: Fixed some minor bugs exposed by the Intel ↵Elena Pourmal2008-05-084-8/+5
| | | | | | compiler on tungsten. Platforms tested: tungsten is still configuring.
* [svn-r14946] added an option to allow a user defined formatting string for ↵Pedro Vicente Nunes2008-05-061-1/+3
| | | | printf regarding floating point numbers
* [svn-r14944] Maintenance: Disabled -O3 optimization for gcc 4.3Elena Pourmal2008-05-061-3/+3
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* [svn-r14941] Maintenance: Cleaned up more test code, fixed more bugs in the ↵Elena Pourmal2008-05-063-100/+16
| | | | | | | | test and source codes. This check-in should address Fortran failures on liberty and smirom. Platforms tested: kagiso with Intel, smirom with g95 -fPIC, liberty with gfortran42
* [svn-r14939] Purpose: Bug Fix (Bug 794)Mike McGreevy2008-05-061-18/+19
| | | | | | | | | | | | | | | | | | | | | | | Description: Test gcov script on kagiso Solution: The bin/gcov_script was not working on kagiso (it was written to be used on heping, but since we don't have heping anymore, we need it on kagiso). There was a problem in that the generated .gcda files were being created in the /src/.libs directory when the script was expecting them to be in the /src directory. Also, -lgcov was added to LDFLAGS. The script performs configuration of HDF5 and runs the tests, and generates code coverage statistics for the source code files, which it places in the gcov_logs directory. The individual *.gcov files show the number of times each individual line of the associated source file is executed, and displays branches tken information as well. The file gcov.log shows a summary of each source file's coverage statistics in one easily accessible file. Tested: kagiso
* [svn-r14937] fix typo in commentPedro Vicente Nunes2008-05-061-2/+2
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* [svn-r14936] add 2 new files for the h5dump user defined floting point formatPedro Vicente Nunes2008-05-061-0/+2
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* [svn-r14935] correct an error in the usage textPedro Vicente Nunes2008-05-052-2/+2
| | | | tested: windows, linux, solaris
* [svn-r14934] Add a test for the floating point user defined printf formatPedro Vicente Nunes2008-05-056-3/+93
| | | | | | | | | | | | | | | | Usage is -m T, --format=T Where T - is a string containing the floating point format, e.g '%.3f' The test consists of writing a number with 7 fractional digits (default precision display of %f is 6 digits) and have the 7 digits displayed with -m %.7f fpformat.h5 Tested: windows, linux, solaris Note: the output file was generated in linux, it may be possible that platforms other than the ones tested have a different representation of the number
* [svn-r14933] Purpose: Updating HDF5 to use automake 1.10.1 and libtool 2.2.2Mike McGreevy2008-05-0546-15491/+17839
| | | | | | | | | | | | | | | | | | Description: Applying update to autotools that was applied to 1.8 a couple of weeks ago to the trunk. Updated bin/reconfigure script to reflect the new versions of libtool and automake in the /home1/packages/ directory. Rearranged configure.in script. When using libtool 2.2.2, the libtool script doesn't generate until later in the configuration process, so I had to move a test that parsed through the libtool script to a point after where it was actually being generated. Ran libtoolize on the project, and ran bin/reconfigure to regenerate configure and Makefile.in's throughout. Tested: kagiso, smirom, linew (h5committest)
* [svn-r14930] Maintenance: Fixed more bugs/typos and enabled tests that were ↵Elena Pourmal2008-05-055-48/+77
| | | | | | | | | | failing previously on linew. Currently only one test (dense attributes) is failing. It looks like C library problem and we have a similar bug report in Bugzilla: when dense storage is used, attributes are not written to the file; somehow similar C test doesn't expose the problem while Fortran test does. Platforms tested: linew, kagiso with g95 and PGI
* [svn-r14928] Maintenance: Cleaned up the code to make it compile on smirom ↵Elena Pourmal2008-05-0416-81/+107
| | | | | | | | with the g95 compiler Platforms tested: kagiso with PGI compilers, linew, smirom with GCC and g95 compilers; some tests and function calls are commented out with !EP string; we will be working on it.
* [svn-r14927] Maintenance: Enabled all tests that pass on linew. Disabled ↵Elena Pourmal2008-05-043-19/+20
| | | | tests are commented with !!EP for now.
* [svn-r14926] Maintenance: More cleanup in the test output and enabled ↵Elena Pourmal2008-05-041-7/+8
| | | | another test for linew before daily tests start.
* [svn-r14925] Maintenance: Cleaned up reporting of the tests nd enable some ↵Elena Pourmal2008-05-042-22/+22
| | | | tests that pass on linew.
* [svn-r14924] Commented out new tests since they failcompletely on linew ↵Elena Pourmal2008-05-041-41/+41
| | | | while passing on smirom and kagiso.
* [svn-r14923] Maintenance: This check-in merges changes from the fortran_1_8 ↵Elena Pourmal2008-05-0350-1976/+19627
| | | | | | | branch back into the trunk (up to revision 14921) Platforms tested: kagiso with g95 and Intel compilers; more testing will be done after checking in a fresh copy from the trunk. New code itself was tested with all Fortran compilers available at THG
* [svn-r14918] Fixed bugs in two tests specific for windows.Vailin Choi2008-05-021-35/+34
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* [svn-r14916] Description:Quincey Koziol2008-05-012-21/+21
| | | | | | | | Clean up files created & cleaned up for dataset tests. Tested on: Max OS X/32 10.5.2 (amazon) Too minor to require h5committest
* [svn-r14913] Introduced a compression ratio = uncompressed size / ↵Pedro Vicente Nunes2008-05-011-13/+15
| | | | | | | | compressed size in the printing of the compression with 3 digits of precision per hdf-forum NASA developers suggestion tested: windows, linux
* [svn-r14910] add mention of new compression ratio feature in h5dumpPedro Vicente Nunes2008-05-011-2/+6
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* [svn-r14905] Introduced a ratio formula compression ratio = uncompressed ↵Pedro Vicente Nunes2008-05-016-12/+12
| | | | | | | | size / compressed size in the printing of the compression with 3 digits of precision per hdf-forum NASA developers suggestion tested: windows, linux, solaris
* [svn-r14903] Undoing change committed in r14902.Scot Breitenfeld2008-04-30524-34238/+41857
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* [svn-r14902] Merged fortran_1_8 branch changes r14505:14901 into the trunk. ↵Scot Breitenfeld2008-04-30524-41857/+34238
| | | | New fortran wrappers added.
* [svn-r14893] fix typo in commentPedro Vicente Nunes2008-04-291-1/+1
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* [svn-r14892] RFC display compression ratio in h5dumpPedro Vicente Nunes2008-04-296-11/+82
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Here's the current behavior of h5dump regarding the printing of the dataset creation property list For example ./h5dump -H -p -d filters HDF5 "tfilters.h5" { DATASET "deflate" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 20, 10 ) / ( 20, 10 ) } STORAGE_LAYOUT { CHUNKED ( 10, 5 ) SIZE 385 } FILTERS { COMPRESSION DEFLATE { LEVEL 9 } } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET VALUE 0 } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR } } } The proposed behavior is to add this information after SIZE SIZE 385 (51.9%COMPRESSION) That percentage is obtained trough Per = (b-a) / a Where a = theoretical size obtained by multiplying datum size times number of elements b = size obtained with H5Dget_storage_size The final print would look like HDF5 "tfilters.h5" { DATASET "deflate" { DATATYPE H5T_STD_I32LE DATASPACE SIMPLE { ( 20, 10 ) / ( 20, 10 ) } STORAGE_LAYOUT { CHUNKED ( 10, 5 ) SIZE 385 (51.9%COMPRESSION) } FILTERS { COMPRESSION DEFLATE { LEVEL 9 } } FILLVALUE { FILL_TIME H5D_FILL_TIME_IFSET VALUE 0 } ALLOCATION_TIME { H5D_ALLOC_TIME_INCR } } } tested: windows, linux, solaris
* [svn-r14867] Purpose: Add new source files to Windows projectsScott Wegner2008-04-284-0/+28
| | | | | | | | Description: Two new source files have been added, H5Dchunk.c and H5Dscatgath.c. This checkin adds the files to the Windows project files as well. Tested: VS2005 on WinXP
* [svn-r14864] Snapshot version 1.9 release 4HDF Tester2008-04-277-31/+32
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* [svn-r14860] Description:Quincey Koziol2008-04-2431-5911/+5242
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Omnibus raw data I/O revisions, with wide-ranging changes and refactoring, in order to prepare for implementing "fast append" feature. These changes remove the majority of the code duplication for raw data I/O which has crept in over the last ten years and introduces a more object- oriented design for operating on different types of dataset storage. Chunked storage no longer has it's own I/O routines, it is now handled as either contiguous (if chunk is not pulled into the cache) or compact (if the chunk is cached in memory). No bug or feature changes, at least intentionally... :-) Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.5.2 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14857] Purpose: Fix typo in Windows test scriptScott Wegner2008-04-211-2/+2
| | | | | | | | Description: A small typo in the main Windows test script was causing the C++ library tests not to run by default. Tested: VS2005 on WinXP x64
* [svn-r14855] Purpose: Fix error message when with Windows pthreadsScott Wegner2008-04-211-27/+31
| | | | | | | | Description: When building HDF5 with thread safety on Windows, the err_compat test was failing because our output was being parsed incorrectly. Rather than having a thread number in the error stack trace, there will be the string "some thread: no way to know the thread (IDs): from pthread on windows:". This checkin now takes this into account, and modifies the output accordingly. Tested: VS2005 on WinXP with Pthreads
* [svn-r14854] Purpose: Remove many spurious compiler warnings in Visual StudioScott Wegner2008-04-21184-2551/+2716
| | | | | | | | | | Description: On Windows, many POSIX functions have been replaced by a similarly-named function with some additional security-checking. Visual Studio issues a warning each time the POSIX version is used, recommending that we replace it with the new version. This results in thousands of errors when building the HDF5 library. This checkin adds a Visual Studio "Property Sheet", which has been applied to all library projects, and defines a number of preprocessors to suppress these warnings. The warnings have been disabled only in Visual Studio 2005 project files, as VS.NET doesn't support property sheets. Tested: VS2005 on WinXP
* [svn-r14853] Purpose: Comment-out 2 windows-specific testsScott Wegner2008-04-211-2/+2
| | | | | | | | Description: Vailin has been working on some new tests for converting Windows paths. She found a bug that is making these two tests fail, but didn't have time to fix it. We've commented out the two tests until she has time to fix the bug. This won't affect other platforms because it's Windows-specific code. Tested: VS2005 on WinXP
* [svn-r14852] Purpose: Update bug fixesBinh-Minh Ribler2008-04-211-0/+8
| | | | | Description: Added notes about fixes on bugzillas 1045 and 1056.
* [svn-r14850] Purpose: Fixed bugsBinh-Minh Ribler2008-04-202-24/+40
| | | | | | | | | | | | | | | | Description: - Revised Attribute::write and Attribute::read wrappers to handle memory allocation/deallocation properly. (bugzilla 1045) - Changed free() to H5Dfree(), also needed H5private.h - Corrected quite a few typos in documenting! Platforms tested: SunOS 5.10 (linew) Linux 2.6 (kagiso) FreeBSD (duty) - there was something wrong in the C tests for makecheck hung quite a long time; I went ahead with makecheck just in c++ dir, since the changes didn't effect the C tests. I'll keep an eye on the tests tonight...
* [svn-r14849] Snapshot version 1.9 release 3HDF Tester2008-04-208-19/+19
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