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* Update buffer countQuincey Koziol2020-08-281-1/+8
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* Merge remote-tracking branch 'origin/develop' into ↵Quincey Koziol2020-08-2834-200/+250
|\ | | | | | | fix_nil_collective_metadata_write
| * Merge pull request #2863 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-08-2734-200/+250
| |\ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '49e01e594eb2d0c25455e7ff71eed3de074fd15b': Adds RELEASE.txt note about HDFS VFD stubs being removed Removes inappropriate file locking call Trivial whitespace change to H5Pencdec.c Minor refactoring based on 1.10 normalization work Trivialities noticed while normalizing 1.10
| | * Adds RELEASE.txt note about HDFS VFD stubs being removedDana Robinson2020-08-271-0/+34
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| | * Merge branch 'develop' into develop_minorDana Robinson2020-08-2716-169/+338
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| | * Removes inappropriate file locking callDana Robinson2020-08-181-2/+0
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| | * Trivial whitespace change to H5Pencdec.cDana Robinson2020-08-171-4/+4
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| | * Minor refactoring based on 1.10 normalization workDana Robinson2020-08-1729-192/+210
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| | * Merge branch 'develop' into develop_minorDana Robinson2020-08-1717-1847/+3640
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| | * | Trivialities noticed while normalizing 1.10Dana Robinson2020-08-172-2/+2
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* | | | Revert PR 405 ↵Quincey Koziol2020-08-271-37/+18
| | | | | | | | | | | | | | | | | | | | | | | | (https://bitbucket.hdfgroup.org/projects/HDFFV/repos/hdf5/pull-requests/405/overview) and reimplement with correct and simpler code.
* | | | Revert " Checkin of fix for CGNS bug"Quincey Koziol2020-08-278-207/+8
| | | | | | | | | | | | | | | | This reverts commit 94c34773ceae5b30c4afb227d0385ebf4ab6ce28.
* | | | Revert "Removed commeted out code from H5C_dump_coll_write_list()"Quincey Koziol2020-08-271-0/+5
|/ / / | | | | | | | | | This reverts commit eb75dc1bb02e13902d73a36caafe763eea585d02.
* | | Merge pull request #2849 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-08-263-3/+10
|\ \ \ | | | | | | | | | | | | | | | | | | | | * commit '0932c46e3d5b09d32cbe29335e8054302ab122c5': MinGW uses "MinGW Makefiles" The version string has a second use for packaging
| * | | MinGW uses "MinGW Makefiles"Allen Byrne2020-08-261-1/+6
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| * | | The version string has a second use for packagingAllen Byrne2020-08-262-2/+4
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* | | Merge pull request #2839 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-08-251-0/+20
|\ \ \ | | | | | | | | | | | | | | | | * commit '336b30024216b142eb096bf85986786ecf65e993': Add back function for VERIFY_EXTERNAL_CONSOLIDATION
| * | | Add back function for VERIFY_EXTERNAL_CONSOLIDATIONAllen Byrne2020-08-251-0/+20
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* | | Merge pull request #2826 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-08-242-1/+5
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'ec1c324a0d184d2778e9155140367a7d3a307fa1': Revert H5_VERS_SUBRELEASE check Add special case when H5_VERS_SUBRELEASE is 0 Condition if (H5_VERS_SUBRELEASE) is incorrectly false when H5_VERS_SUBRELEASE is 0, a valid value for H5_VERS_SUBRELEASE. Updated to if (${H5_VERS_SUBRELEASE} STREQUAL "") with corresponding reversal of action statements to avoid NOT. Add hypen to subrelease regex Fix S3/HDFS test
| * | | Revert H5_VERS_SUBRELEASE checkAllen Byrne2020-08-241-5/+1
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| * | | Add special case when H5_VERS_SUBRELEASE is 0Allen Byrne2020-08-241-3/+7
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| * | | Condition if (H5_VERS_SUBRELEASE) is incorrectly false whenLarry Knox2020-08-241-3/+3
| | | | | | | | | | | | | | | | | | | | | | | | H5_VERS_SUBRELEASE is 0, a valid value for H5_VERS_SUBRELEASE. Updated to if (${H5_VERS_SUBRELEASE} STREQUAL "") with corresponding reversal of action statements to avoid NOT.
| * | | Add hypen to subrelease regexAllen Byrne2020-08-231-1/+1
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| * | | Fix S3/HDFS testAllen Byrne2020-08-231-0/+4
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* | | Merge pull request #2819 in HDFFV/hdf5 from coll_chunk_fill_fix to developQuincey Koziol2020-08-211-54/+60
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '4c43ff0b8b015ccfc1f4aeab18f189d629a5beb9': Simplify default use of MPI_BYTE Don't free builtin MPI_BYTE MPI type Simplify code to avoid using a boolean to free MPI types Avoid creating MPI datatypes on ranks with 0 chunks to write'
| * | | Simplify default use of MPI_BYTEQuincey Koziol2020-08-201-8/+3
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| * | | Don't free builtin MPI_BYTE MPI typeQuincey Koziol2020-08-201-2/+2
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| * | | Simplify code to avoid using a boolean to free MPI typesQuincey Koziol2020-08-201-7/+3
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| * | | Avoid creating MPI datatypes on ranks with 0 chunks to write'Quincey Koziol2020-08-201-53/+68
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* | | Merge pull request #2816 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2020-08-201-34/+20
|\ \ \ | | | | | | | | | | | | | | | | * commit '76d93a78fe583b99efa295cd44359092310172a3': Revert "Merge pull request #2796 in HDFFV/hdf5 from small_chunk_io_opt to develop"
| * | | Revert "Merge pull request #2796 in HDFFV/hdf5 from small_chunk_io_opt to ↵Larry Knox2020-08-201-34/+20
|/ / / | | | | | | | | | | | | | | | | | | develop" This reverts commit a7a8e6451a37d1bd072c7281b432f1436795daef, reversing changes made to 30422a6b55a135ec406d484a6c66f995057e0a50.
* | | Merge pull request #2796 in HDFFV/hdf5 from small_chunk_io_opt to developQuincey Koziol2020-08-191-20/+34
|\ \ \ | | | | | | | | | | | | | | | | * commit 'ad9a2ceabe2dd9045111f8b57774948a124607b9': Only initialize the contiguous or compact I/O info struct when needed.
| * | | Only initialize the contiguous or compact I/O info struct when needed.Quincey Koziol2020-08-171-20/+34
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* | | | Merge pull request #2806 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:develop to developLarry Knox2020-08-184-48/+0
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | * commit '98754591b8dcf2be70957d67ec7172c53cbaa827': Revert "Merge pull request #2477 in HDFFV/hdf5 from pio_update to develop"
| * | | | Revert "Merge pull request #2477 in HDFFV/hdf5 from pio_update to develop"Larry Knox2020-08-184-48/+0
|/ / / / | | | | | | | | | | | | | | | | This reverts commit ba80bcaff24113f438da0f40cb5b5479d4a21cc6, reversing changes made to 522ef0dd5ca1daa2b26c3fe4459ddbb1eaf6ec20.
* | | | Merge pull request #2801 in HDFFV/hdf5 from ↵Larry Knox2020-08-181-1/+1
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:swmr_test_fail_cmake to develop * commit '857e0f4404cb5a754d799110b89f0f16b503b4ce': Fixes CMake issue with file locking variable
| * | | | Fixes CMake issue with file locking variableDana Robinson2020-08-181-1/+1
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* | | | Merge pull request #2795 in HDFFV/hdf5 from ↵Larry Knox2020-08-183-1/+8
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~BMRIBLER/hdf5_bmr2020:hdf5_bmr2020_addrsani to develop * commit '5352b1dbc92313d91d3502dd8352352abe8749a7': Fixed typo Fix HDFFV-11101
| * | | | Fixed typoBinh-Minh Ribler2020-08-181-1/+1
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| * | | | Fix HDFFV-11101Binh-Minh Ribler2020-08-172-0/+7
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description Added initialization to local structs in the src function H5MF_settle_raw_data_fsm() and the test function test_bt2_hdr_fd() to prevent the following error in two different occurrences: MemorySanitizer: use-of-uninitialized-value Platforms tested: Linux/64 (jelly) Linux/64 (platypus)
* | | | | Merge pull request #2477 in HDFFV/hdf5 from pio_update to developLarry Knox2020-08-184-0/+48
|\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | * commit 'a20bf599b682bfa0a91d571a922973e0c53b524a': Don't track file offset position when using pread / pwrite.
| * \ \ \ \ Merge remote-tracking branch 'origin/develop' into pio_updateQuincey Koziol2020-08-161009-34390/+36775
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| * \ \ \ \ \ Merge remote-tracking branch 'origin/develop' into pio_updateQuincey Koziol2020-04-1969-2036/+13145
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| * \ \ \ \ \ \ Merge remote-tracking branch 'origin/develop' into pio_updateQuincey Koziol2020-04-0970-1511/+1907
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| * \ \ \ \ \ \ \ Merge remote-tracking branch 'origin/develop' into pio_updateQuincey Koziol2020-04-042-2/+2
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| * \ \ \ \ \ \ \ \ Merge remote-tracking branch 'origin/develop' into pio_updateQuincey Koziol2020-04-0322-565/+790
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| * | | | | | | | | | Don't track file offset position when using pread / pwrite.Quincey Koziol2020-03-294-32/+80
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* | | | | | | | | | | Merge pull request #2734 in HDFFV/hdf5 from ~DYOUNG/werror:cse to developLarry Knox2020-08-181-96/+106
|\ \ \ \ \ \ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'fa7f8ad2f3fe509ff69dc574ddad0ae4d329ccca': Improve code readability: extract common subexpressions into temporary variables.
| * | | | | | | | | | | Improve code readability: extract common subexpressions into temporaryDavid Young2020-08-041-96/+106
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | variables.
* | | | | | | | | | | | Merge pull request #2735 in HDFFV/hdf5 from ~DYOUNG/werror:virtual-write-one ↵Larry Knox2020-08-181-1/+1
|\ \ \ \ \ \ \ \ \ \ \ \ | |_|_|_|_|_|_|_|_|/ / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit '7b48e3409a8c3ba1e83c929656e84196a6dc2e6d': Fix a bug in H5D__virtual_write_one to stop an assertion from failing deep in H5Dwrite---project the *clipped* virtual selection instead of the virtual selection:
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