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* H5_HAVE_PARALLEL, _DEBUG_API, etc. Add attributes to some variables andDavid Young2020-02-1014-32/+63
| | | | parameters that are unused under some configurations.
* Merge pull request #2361 in HDFFV/hdf5 from ~MYANG6/hdf5-develop:develop to ↵Muqun Yang2020-02-072-1/+18
|\ | | | | | | | | | | | | develop * commit '1b937c69f4b8187401eeb8eef195bbcc2ea58312': HDFFV-11014, fix the h5repack issue that misses a few attributes during the repacking. The flag that checks the object reference attribute is not updated properly. The fix is trivial. Just need to move the flag update line into the inner loop. Tested at Jelly. Also update the release.txt.
| * HDFFV-11014, fix the h5repack issue that misses a few attributes during the ↵Muqun Yang2020-02-072-1/+18
|/ | | | repacking. The flag that checks the object reference attribute is not updated properly. The fix is trivial. Just need to move the flag update line into the inner loop. Tested at Jelly. Also update the release.txt.
* Merge pull request #2354 in HDFFV/hdf5 from ~DYOUNG/werror:fix_h5ts_private ↵David Young2020-02-061-3/+2
|\ | | | | | | | | | | | | to develop * commit '8f77878953b55cbffb6331161d12eab1c778a8a5': Oops, the test has to return success in the unimplemented case.
| * Oops, the test has to return success in the unimplemented case.David Young2020-02-061-3/+2
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* | Merge pull request #2349 in HDFFV/hdf5 from ~DYOUNG/werror:fix_h5ts_private ↵David Young2020-02-061-0/+7
|\ \ | |/ | | | | | | | | | | to develop * commit 'a0a75e7b6e157b40bbe09c7955153835ce200f79': If H5_HAVE_THREADSAFE is not #defined, define nothing but a stub implementation of H5TS_thread_id().
| * If H5_HAVE_THREADSAFE is not #defined, define nothing but a stub implementationDavid Young2020-02-051-0/+7
| | | | | | | | of H5TS_thread_id().
* | Merge pull request #2346 in HDFFV/hdf5 from ~JHENDERSON/hdf5:develop to developJordan Henderson2020-02-061-0/+44
|\ \ | |/ |/| | | | | * commit 'be0cd0b64aef3f64b15d5fc89cd15213ad939763': Add RELEASE.txt note for token refactoring changes
| * Merge branch 'develop' of ↵Jordan Henderson2020-02-0511-25/+292
| |\ | |/ |/| | | ssh://git@bitbucket.hdfgroup.org:7999/~jhenderson/hdf5.git into develop
* | Merge pull request #2341 in HDFFV/hdf5 from ~DYOUNG/werror:thread_id to developDavid Young2020-02-0511-25/+292
|\ \ | | | | | | | | | | | | | | | | | | | | | * commit 'cefacee21b5ad569e2394b32793648e1b80f3d6b': src/H5Eint.c: #include H5TSprivate.h for H5TS_thread_id() definitions. Change thread IDs to uint64_t from unsigned long, per Quincey's suggestion. Add thread_id.c to the MANIFEST and the CMakeLists.txt per Allen's request. Replace pthread_self_ulong() with H5TS_thread_id(). The POSIX Threads implementation ought to be portable to any system that has POSIX Threads. On Windows, I use the same API call as before.
| * | src/H5Eint.c: #include H5TSprivate.h for H5TS_thread_id() definitions.David Young2020-02-032-2/+3
| | | | | | | | | | | | test/thread_id.c: move threads_failure() inside #ifdefs.
| * | Change thread IDs to uint64_t from unsigned long, per Quincey's suggestion.David Young2020-02-036-19/+20
| | | | | | | | | | | | | | | Fix a typo in the H5TS_thread_init() comment and reword some ID properties.
| * | Add thread_id.c to the MANIFEST and the CMakeLists.txt per Allen'sDavid Young2020-02-032-0/+2
| | | | | | | | | | | | request.
| * | Replace pthread_self_ulong() with H5TS_thread_id(). The POSIX ThreadsDavid Young2020-02-039-25/+288
| | | | | | | | | | | | | | | implementation ought to be portable to any system that has POSIX Threads. On Windows, I use the same API call as before.
| | * Add RELEASE.txt note for token refactoring changesJordan Henderson2020-02-051-0/+44
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* | Merge pull request #2345 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-02-051-0/+7
|\ \ | | | | | | | | | | | | * commit '7c9427219ff903ee0ebdd56ed253b29e83ce0c06': HDFFV-11012 - add release note
| * | HDFFV-11012 - add release noteAllen Byrne2020-02-051-0/+7
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* | Merge pull request #2343 in HDFFV/hdf5 from ↵Allen Byrne2020-02-053-6/+6
|\ \ | | | | | | | | | | | | | | | | | | ~BYRN/hdf5_adb:bugfix/HDFFV-11012-fortran-include-paths to develop * commit '3ec66d55426c5c947eeb6f4d7d5d31b38f59ebf6': HDFFV-11012 - add correct fortran include path properties
| * | HDFFV-11012 - add correct fortran include path propertiesAllen Byrne2020-02-043-6/+6
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* | | Merge pull request #2342 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-02-045-0/+392
|\ \ \ | |_|/ |/| | | | | | | | | | | * commit '93f6e6761833ba579128503c3fe47b76b02fa85c': HDFFV-10996 add release note HDFFV-10996 - add java vol tests
| * | HDFFV-10996 add release noteAllen Byrne2020-02-041-0/+6
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| * HDFFV-10996 - add java vol testsAllen Byrne2020-02-034-0/+386
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* Merge pull request #2329 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:H5MM_const to ↵Dana Robinson2020-01-3110-50/+67
|\ | | | | | | | | | | | | | | | | develop * commit '10301154215fb6a22590e80f7b5ed0005f3e1786': Minor refactoring to the VFD info free call. Updated the 'const memory free' changes based on PR feedback. Added a free wrapper that lets us free constant pointers without generating warnings.
| * Minor refactoring to the VFD info free call.Dana Robinson2020-01-311-10/+8
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| * Updated the 'const memory free' changes based on PR feedback.Dana Robinson2020-01-319-45/+27
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| * Added a free wrapper that lets us free constant pointers withoutDana Robinson2020-01-308-25/+62
| | | | | | | | | | | | | | generating warnings. Also, brought the const-ness of the VOL connector info in line with the VFD info (not visible externally).
* | Merge pull request #2330 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-01-301-0/+6
|\ \ | |/ |/| | | | | * commit '099e68140101a6a2cd128f68d5f6b76661a1de92': VS2010 needs an underscore
| * VS2010 needs an underscoreAllen Byrne2020-01-301-0/+6
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* Merge pull request #2328 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2020-01-307-718/+988
|\ | | | | | | | | | | | | to develop * commit 'a67c238feef1487814b02132bfd7961f22d9d6eb': Cleaned up remaining warnings in high-level library.
| * Cleaned up remaining warnings in high-level library.Dana Robinson2020-01-307-718/+988
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* | Merge pull request #2326 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2020-01-295-29/+31
|\ \ | | | | | | | | | | | | | | | | | | * commit 'c5e2d975734d6e7a88fb48b76ec7e11d0a7763de': Small fixes for tools and skip autotools tests for no filter Correctly manage warnings for new tests Ext libs ZLIB and SZIP warnings are separate concerns
| * | Small fixes for tools and skip autotools tests for no filterAllen Byrne2020-01-294-29/+28
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| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-01-2950-461/+507
| |\ \ | |/ / |/| | | | | | | | | | | | | | | | | | | | | | | * commit '30ca0cdc9a0b1f7fc1521007c65d9baeb69c9a23': fix bad function cast warning initialization discards const warning testpar/t_2Gio.c: Fix a typo that I think was introduced by a previous warnings PR. An array element was assigned to itself---shape[2]Â =Â shape[2];---instead of being assigned to chunk[2]. Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required. Reduce differences between my -Werror branch and `develop`: fix unused function warning
* | | Merge pull request #2323 in HDFFV/hdf5 from ~KMU/hdf5:misc to developKimmy Mu2020-01-293-47/+76
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | * commit 'c586d91ea003f37d130c2c45eea6f573f7d3d3bc': fix bad function cast warning initialization discards const warning fix unused function warning
| * \ \ Merge branch 'develop' into misckmu2020-01-2995-818/+1325
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* | | | Merge pull request #2318 in HDFFV/hdf5 from ↵David Young2020-01-2926-276/+265
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DYOUNG/werror:reduce-werror-diffs-1 to develop * commit 'fa1b2f6ef35c459c9f74ead885c119ae7f61c056': Reduce differences between my -Werror branch and `develop`:
| * | | | Reduce differences between my -Werror branch and `develop`:David Young2020-01-2926-276/+265
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Rename index -> idx, fileno -> fnumber, fileno -> fno to avoid GCC shadowed declaration warnings about index(3). Convert #pragma GCC diagnostic push/pop/ignored to the HDF5 library's H5_GCC_DIAG_OFF()/H5_GCC_DIAG_ON() macros.
* | | | | Merge pull request #2320 in HDFFV/hdf5 from ↵David Young2020-01-299-83/+77
|\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DYOUNG/werror:reduce-werror-diffs-2 to develop * commit 'a5f236e83bdd29e660a55c5577a69a3809605cda': Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required.
| * | | | | Reduce casts of HDcalloc()/HDmalloc() that -Wc++-compat required.David Young2020-01-299-83/+77
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Reduce gratuitous casts---e.g., (size_t)1. Use the right format string for a pointer. In the H5C sanity checks, change a "size increase" variable from ssize_t (too narrow) to int64_t (wide enough). Parenthesize every appearance of `storage` in the macro `H5D_CHUNK_STORAGE_INDEX_CHK(storage)` so that you can pass in an expression like &sc and it works properly. Disallow re-assignment of the `dset` parameter to H5D__chunk_init() because it helped assure me that it's safe to replace the repeating expression `&dset->shared->layout.storage.u.chunk` with `sc` throughout. Replace lengthy expressions such as `&dset->shared->layout.storage.u.chunk` with `sc` throughout several functions in H5Dchunk.c ISTR that the compiler warned that `sc` was declared but unused in a couple of functions, and then I found that `sc` could be used in many places. Maybe the disused `sc` appeared because a bunch of code was copied and pasted, I don't know. Anyway, it's a lot tighter code now that I use `sc`. In H5D__chunk_update_old_edge_chunks() and H5D__chunk_delete() I actually expand `sc` and another temporary variable, `pline`, because they're used only in !defined(NDEBUG) code. This squashes unused-variable warnings in the defined(NDEBUG) configuration. Don't drop the `volatile` qualification with a cast in tools/src/h5import/h5import.c.
* | | | | | Merge pull request #2321 in HDFFV/hdf5 from ↵David Young2020-01-2914-55/+89
|\ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DYOUNG/werror:reduce-werror-diffs-3 to develop * commit 'f19e06b59ee53f17465a7b5974c25c3245a40d9a': testpar/t_2Gio.c: Fix a typo that I think was introduced by a previous warnings PR. An array element was assigned to itself---shape[2]Â =Â shape[2];---instead of being assigned to chunk[2].
| * | | | | | testpar/t_2Gio.c: Fix a typo that I think was introduced by aDavid Young2020-01-2914-55/+89
| |/ / / / / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | previous warnings PR. An array element was assigned to itself---shape[2]Â =Â shape[2];---instead of being assigned to chunk[2]. fortran/src/H5Pf.c: move conditional compilation controlled by H5_NO_DEPRECATED_SYMBOLS outside of a function for readability. fortran/src/H5match_types.c: put a variable's declaration under the same conditional compilation (H5_FORTRAN_HAVE_C_LONG_DOUBLE) as its use. For now, skip compilation of some unused debug dump routines in the JNI. While I'm in the JNI, delete a set-but-unused variable. src/H5Z.c: condition a variable declaration on H5_NO_DEPRECATED_SYMBOLS so that it's not declared but unused or vice versa. test/cache_common.h: add an #include in to get some symbols we need to avoid implicit declaration warnings. test/dsets.c: use a more conventional conditional-compilation syntax. test/dt_arith.c, test/fillval.c: initialize a bunch of uninitialized variables before use. test/vfd.c: pass the expected type of `void **` to posix_memalign(3) instead of `int **`. testpar/t_bigio.c: explicitly compare with 0 instead of using ! when "equal to 0?" is the question not "is false?" Repair some indentation while I'm here. testpar/testpar.h: repair misaligned line-continuation backslashes in a macro that probably should be a function so that we don't have to fiddle with the line continuation to begin with. tools/src/h5repack/h5repack_main.c: fix some compiler fussing about enums. tools/test/perform/pio_engine.c: the compiler fusses if you cast a function call returning double directly to off_t. It's ok if you cast a variable that's a double to off_t, however. Write and use a new function, sqrto(), to avoid the cast warnings.
| | | * | | fix bad function cast warningkmu2020-01-291-2/+2
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| | | * | | initialization discards const warningkmu2020-01-291-7/+7
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| | | * | | Merge branch 'develop' into misckmu2020-01-2820-341/+260
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| | | * | | fix unused function warningkmu2020-01-282-40/+69
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| | | | * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-01-2920-248/+165
| | | | |\ \ | |_|_|_|/ / |/| | | | | | | | | | | | | | | | | | | | | | | * commit '20c09524ea348f4009555a1cba2731842b9af80e': HDFFV-11011 - merge include list HDFFV-11011 correct issues with target file extension
* | | | | | Merge pull request #2319 in HDFFV/hdf5 from ↵Allen Byrne2020-01-2921-286/+197
|\ \ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~BYRN/hdf5_adb:bugfix/HDFFV-11011 to develop * commit 'c8096118d5edd9f27ff0f6180a4dde4c10aafda7': HDFFV-11011 - merge include list HDFFV-11011 correct issues with target file extension
| * | | | | | HDFFV-11011 - merge include listAllen Byrne2020-01-291-2/+1
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| * | | | | | HDFFV-11011 correct issues with target file extensionAllen Byrne2020-01-2821-286/+198
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| | | | | * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2020-01-2917-91/+545
| | | | | |\ \ | |_|_|_|_|/ / |/| | | | | | | | | | | | | | | | | | | | * commit '31616380d107e8f4e4084084984a80871c17528b': Introduce new H5VL _by_value routines
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