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* Hdf5 1 14 1 fix makefile.ins (#2917)Larry Knox2023-05-0582-5063/+7736
| | | | | | * Fix top-level Makefile.in * Generate release files with autogen.sh, autoconf 2.71, automake 1.16.2 and libtool 2.4.6 (module).
* Initial changes for HDF5 1.14.1 release (#2900)Larry Knox2023-05-05104-13/+195272
| | | | | Generate release files with autogen.sh, autoconf 2.71 and automake 1.16.2. Update version to HDF5 1.14.1 for release branch version. Update configure.ac for release: switch configure default to production mode, disable maintainer mode Set HDF5_GENERATE_HEADERS to OFF in src/CMakeLists.txt
* Force lowercase Fortran module file names (#2892)Allen Byrne2023-05-042-0/+12
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* Merge pull request #2887 from jhendersonHDF/1_14_develop_syncjhendersonHDF2023-05-03101-57/+176174
|\ | | | | Sync with develop
| * Add RELEASE.txt entry for API tests (#2889)jhendersonHDF2023-05-031-0/+42
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| * Remove references to old MANIFEST file (#2890)jhendersonHDF2023-05-032-2/+0
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| * Fix Autotools internal-debug=all builds (#2886)jhendersonHDF2023-05-031-1/+1
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| * fixed args in execvp for h5fuse (#2885)Scot Breitenfeld2023-05-031-4/+5
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| * Minor tidying of API tests files (#2878)jhendersonHDF2023-05-032-7/+9
| | | | | | | | | | | | * Minor tidying of API tests files * Remove old API test configuration setting
| * Changes to isolate API Test option files and use fetchcontent (#2880)Allen Byrne2023-05-03113-36608/+89
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| * Add initial version of HDF5 API tests (#2877)jhendersonHDF2023-05-03200-49/+212642
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* Redo remove selection I/O test from testphdf5 in CMake #2860. (#2874) (#2884)Larry Knox2023-05-031-1/+0
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* Update so numbers for hdf5 1.14.1 release. (#2881)Larry Knox2023-05-031-10/+10
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* Sync 2 new develop prs to hdf5_1_14 (#2879)Larry Knox2023-05-023-14/+15
| | | | | | | | | | | | * Add bin directory to make distclean (#2872) This allows h5cc to be cleaned up * Fixed test failure for when REAL is promoted via a compiler flag (#2873) --------- Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: Scot Breitenfeld <brtnfld@hdfgroup.org>
* Sync with develop (#2871)Dana Robinson2023-05-0280-853/+10272
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* Add daily test create binary workflow for prior day (#2862)Allen Byrne2023-05-013-0/+343
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* add new presets (#2861)Allen Byrne2023-05-011-1/+17
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* Allow H5P_DEFAULT in H5Pget_vol_cap_flags and H5Pget_vol_id (#2807) (#2815)jhendersonHDF2023-04-300-0/+0
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* Correct compression install files (#2846)Allen Byrne2023-04-300-0/+0
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* Sync with develop (#2849)Dana Robinson2023-04-2845-1221/+2495
| | | | | | | | | Cherry pick of ea7dfcd (Change Powershell to PowerShell in docs) to 4497feb (Update H5Dget_space_status bug note to reference 1.14.0)
* Fix hdfeos5 workflow concurrency conflicts (#2804) (#2826)jhendersonHDF2023-04-261-1/+1
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* Fix ROS3 VFD anonymous credential usage with h5dump and h5ls (#2798) (#2800)jhendersonHDF2023-04-243-4/+40
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* Correct CMake option defaults - deprecate szip for libaec (#2786)Allen Byrne2023-04-2412-150/+153
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* Merge with develop (#2790)Dana Robinson2023-04-22364-9308/+9537
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* H5Spoint.c: Comment fix (#2783)Dave Allured2023-04-201-1/+1
| | | Comment here should be "point", not "hyperslab".
* Add new version of COPYING_LBNL_HDF5. (#2775)Larry Knox2023-04-181-48/+60
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* Add no subsets option to h5diff like h5dump (#2759)Allen Byrne2023-04-1816-270/+203
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* Clean up memory allocated when reading messages in H5Dlayout on error (#2769)glennsong092023-04-182-4/+23
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* Check for invalid AAPL in H5Aopen (#2712) (#2770)jhendersonHDF2023-04-171-5/+9
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* Remove author and date from RELEASE.txt entries (#2751)Dana Robinson2023-04-161-23/+7
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* Add buffer overrun checks to H5O__layout_decode and H5O__sdspace_decode ↵jhendersonHDF2023-04-154-55/+296
| | | | (#2679) (#2728)
* Merge "Use additional CPUs" and related fixes (#2742)Dana Robinson2023-04-146-6/+28
| | | | * 2720 Fix java depends and pdb lib install * 2695 Use additional CPUs in GitHub actions
* Remove 1.14 release schedule (#2743)Dana Robinson2023-04-143-63/+0
| | | | | | There is no need to maintain the release schedule in each branch, so it's being removed from all branches aside from develop. Also removes the badges that don't pertain to 1.14
* Add Elena to CODEOWNERS for FortranDana Robinson2023-04-141-1/+1
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* Fix a heap buffer overflow during H5D__compact_readvv (GitHub #2606) (#2664) ↵jhendersonHDF2023-04-142-20/+45
| | | | (#2725)
* Fix for github issue #2599: (#2665) (#2706)vchoi-hdfgroup2023-04-132-1/+20
| | | | | | | | | | | | | | | * Fix for github issue #2599: As indicated in the description, memory leak is detected when running "./h5dump pov". The problem is: when calling H5O__add_cont_msg() from H5O__chunk_deserialize(), memory is allocated for cont_msg_info->msgs. Eventually, when the library tries to load the continuation message via H5AC_protect() in H5O_protect(), error is encountered due to illegal info in the continuation message. Due to the error, H5O_protect() exits but the memory allocated for cont_msg_info->msgs is not freed. When we figure out how to handle fuzzed files that we didn't generate, a test needs to be added to run h5dump with the provided "pov" file. * Add message to release notes for the fix to github issue #2599.
* Change name of test file to avoid conflict (#2703)Allen Byrne2023-04-131-2/+2
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* CMake - Match Autotools behavior for library instrumentation (#2648) (#2674)jhendersonHDF2023-04-132-1/+17
| | | Enable library instrumentation by default for parallel debug builds
* Minor fixes for Subfiling VFD tests (#2633) (#2671)jhendersonHDF2023-04-132-26/+109
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* Avoid suppressing error output for non-tentative file opens (#2632) (#2670)jhendersonHDF2023-04-131-11/+41
| | | | | * Avoid suppressing error output for non-tentative file opens * Update comment about tentative file opens
* Fix #2598 sanitize leak (#2675)Allen Byrne2023-04-132-6/+10
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* Fix improper include of build directory (#2422, #2621) (#2667) (#2713)jhendersonHDF2023-04-132-4/+20
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* Fix memory leaks and aborts in H5O EFL decode (#2656) (#2707)Dana Robinson2023-04-131-48/+61
| | | | | | | | | | | | | | | | | | | | | * Convert asserts to error handling in efl decode The function that decodes external data files object header messages would call assert() when parsing malformed files, causing applications to crash when linked against the debug library. This change converts these assert() calls to HDF5 error checks, so the messages are sanity checked in both release and debug mode and debug mode no longer crashes applications. Also cleaned up some error handling usage and debug checks. * Free memory on H5O efl decode errors * Add buffer size checks to efl msg decode * Add parentheses to math expressions Fixes GitHub #2605
* Minor cherry-pick merges to 1.14 (#2582)Larry Knox2023-04-048-10/+60
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * Enclose MESG in do...while loop (#2576) Enclose MSG macro in a do...while loop * Add a clang-format comment about permissions (#2577) * Remove an obsolete comment from the MDS test (#2578) The seed is now broadcast from rank 0, so the warning about multiple machines having different seeds is unnecessary. * Subfiling VFD - fix issues with I/O concentrator selection strategies (#2571) Fix multiple bugs with the SELECT_IOC_EVERY_NTH_RANK and SELECT_IOC_TOTAL I/O concentrator selection strategies and add a regression test for them * Check for overflow when calculating on-disk attribute data size (#2459) * Remove duplicate code Signed-off-by: Egbert Eich <eich@suse.com> * Add test case for CVE-2021-37501 Bogus sizes in this test case causes the on-disk data size calculation in H5O__attr_decode() to overflow so that the calculated size becomes 0. This causes the read to overflow and h5dump to segfault. This test case was crafted, the test file was not directly generated by HDF5. Test case from: https://github.com/ST4RF4LL/Something_Found/blob/main/HDF5_v1.13.0_h5dump_heap_overflow.md --------- Co-authored-by: glennsong09 <43005495+glennsong09@users.noreply.github.com> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com> Co-authored-by: jhendersonHDF <jhenderson@hdfgroup.org> Co-authored-by: Egbert Eich <eich@suse.com>
* Subfiling VFD - fix issues with I/O concentrator selection strategies ↵jhendersonHDF2023-04-043-39/+286
| | | | | | | | (#2571) (#2618) Fix multiple bugs with the SELECT_IOC_EVERY_NTH_RANK and SELECT_IOC_TOTAL I/O concentrator selection strategies and add a regression test for them
* Make sure that ONLY_SHARED_LIBS option is correctly set (#2545)Allen Byrne2023-04-0437-125/+117
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* Fix a memory corruption issue in H5S__point_project_simple (#2626) (#2631)jhendersonHDF2023-04-042-1/+15
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* Update java logger version (#2644)Allen Byrne2023-04-0422-31/+34
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* Cherry-pick merges from develop to hdf5_1_14 (#2572)Larry Knox2023-03-164-9/+12
| | | | Co-authored-by: Mark (he/his) C. Miller <miller86@llnl.gov> Co-authored-by: Dana Robinson <43805+derobins@users.noreply.github.com>
* 1.14 Fix H5Dchunk_iter doxygen example, cherry-pick of 04682f2 (#2519) (#2548)Larry Knox2023-03-161-3/+3
| | | | | * Fix H5Dchunk_iter doxygen example, cherry-pick of ef3bed6 (#2519) Co-authored-by: Mark Kittisopikul <mkitti@users.noreply.github.com>
generated by cgit v0.12 at 2024-11-09 14:33:32 (GMT)