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* [svn-r139] ./src/*.[ch]Robb Matzke1997-12-1062-4245/+5615
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Removed the interface initialization argument from FUNC_ENTER() and made it a locally-defined preprocessor symbol, INTERFACE_INIT. Changed `offset' to `address' and `length' to `size' in documentation so it's more consistent. `Offset' still appears occassionally when it refers to a byte offset within some other data structure. Moved interface termination function prototypes from public header files to .c files and made them static. ./src/H5.c ./src/H5public.h Added H5init() because it's possible that the predefined data types are not initialized. This happens only if the first call to the hdf5 library passes a predefined data type symbol as an argument. There should be some way to fix this... ./src/H5A.c ./src/H5Aprivate.h ./src/H5Apublic.h The free_func returns SUCCEED or FAIL, although the return value is ignored by H5A. This is so we can use the various H5*_close() functions to free things. H5Ainc_ref() and H5Adec_ref() are no longer public. Many of the other atom functions should also be made private, but I'll save that for later... Added additional template groups called H5_TEMPLATE_0 through H5_TEMPLATE_7 that are used by the various template subclasses. Increased the number of bits used for atom groups to prevent negative atoms. ./src/H5AC.c ./src/H5ACprivate.h Changed H5AC_new() to H5AC_create() to make names more consistent. ./src/H5B.c ./src/H5Bprivate.h Changed H5B_new() to H5B_create() to make names more consistent. ./src/H5C.c ./src/H5Cprivate.h ./src/H5Cpublic.h Now supports multiple subclasses of templates, although it's done with big switch statements. The default values for templates are defined in the source file to which that template belongs. This got rid of lots of needless preprocessor constants. Added H5Ccreate() to create a new template. Changed H5C_release() to H5Cclose() to make the naming more consistent. ./src/H5D.c ./src/H5Dprivate.h ./src/H5Dpublic.h Enhanced to use the new dataset interface, and uses the enhanced data type and data space interfaces, which haven't been completely implemented. The dataset interface doesn't handle non-contiguous storage, compression, or data type and space conversions yet. ./src/H5F.c ./src/H5Fprivate.h ./src/H5Fpublic.h Removed H5Fflush() since just calls H5F_flush(), which doesn't do what the user would probably think it does, namely, flush everything. It only flushes those things sitting in the H5AC cache and the boot block. Changed the `file_create_parms' field of H5F_low_t to just `create_parms' since the `file' part is obvious. ./src/H5Fistore.c Added some support for external files. Mostly just in the file format and not supported much by the library yet. I need to finish some dataset functions first. Changed H5F_istore_new() to H5F_istore_create() to make names more uniform across packages. ./src/H5Flow.c Flushing a file causes the file to be physically extended to the logical eof. This prevents H5F_open() from thinking a file has been truncated. Most of the time the file will already be that large, and when it isn't Unix will often just allocate the final block anyway. ./src/H5G.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5Gpkg.h ./src/H5Gprivate.h ./src/H5Gstab.c Removed H5G_basename() Removed (temporarily) data type information from symbol table entries and renamed H5G_CACHED_SDATA to H5G_CACHED_SDSPACE to reflect that it's a simple data space and has nothing to do with raw data. Changed H5G_node_new() to H5G_node_create() and H5G_stab_new() to H5G_stab_create() to make names more uniform across packages. Fixed an undefined address bug that happens when H5G_node_debug() program doesn't pass enough info to H5G_node_load(). ./src/H5H.c ./src/H5Hprivate.h Changed H5H_new() to H5H_create() to make the names more uniform across packages. ./src/H5M.c ./src/H5Mprivate.h ./src/H5Mpublic.h Nulled all the create functions. Most of the other callbacks are to public functions. Removed H5Mcreate(). Changed hobjtype_t to group_t since it has to be the same thing anyway. ./src/H5O.c ./src/H5Oprivate.h ./src/H5Osdim.c ./src/H5Osdtyp.c Changed H5O_SIM_DIM to H5O_SDSPACE (simple data space) since `simple data space' is its official name, not `simple dimensions'. Will eventually add H5O_CDSPACE for comples data spaces. Changed _sim_dim_ to _dspace_. Replaced H5O_SIM_DTYPE and the compound data type messages with a single H5O_DTYPE message. Changed _sim_dtype_ to _dtype_. Changed H5O_STD_STORE to H5O_CSTORE (contiguous storage) since contiguous storage is not necessarily standard. Changed _std_store_ to _cstore_ in H5Ocstore.c Added the H5O_EFL (external file list) message. Changed H5O_new() to H5O_create() to make names more uniform across packages. ./src/H5Oefl.c NEW External file list message for specifying which non-hdf5 files contain raw data for a dataset. ./src/H5P.c ./src/H5Pprivate.h ./src/H5Ppublic.h Renamed and moved data structures to make the names conform to our naming scheme. ./src/H5T.c ./src/H5Tprivate.h ./src/H5Tpublic.h ./src/H5Tpkg.h NEW Data structures redesigned to be more flexible. The interface was redesigned to make it more regular and to make some names more uniform across packages. ./src/H5detect.c Output was changed to produce a file that conforms to the hdf5 coding standard. ./src/Makefile.in Generates H5Tinit.c by running H5detect. ./src/debug.c Moved command argument processing.
* [svn-r138] ./config/conclude.inRobb Matzke1997-12-101-4/+3
| | | | | | | | Added ability to clean other files. The extra files to remove should be listed in a make variable with the same name as the target. For instance, $(MOSTLYCLEAN) is a list of files in addition to the normal files that should be removed when the user types `make mostlyclean'.
* [svn-r137] ./MANIFESTRobb Matzke1997-12-101-3/+6
| | | | Added/removed files
* [svn-r136] ./MANIFESTRobb Matzke1997-11-1447-1490/+3030
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ./src/Makefile.in Added H5Ffamily.c and H5Fsplit.c ./src/H5B.c ./src/H5Bprivate.h ./src/H5Gnode.c Added `const' to sublass arguments. ./src/H5F.c ./src/H5Flow.c ./src/H5Fsec2.c Make sure file buffers get flushed during a call to H5Fflush(). Check for overflow in address encoding and decoding. ./src/H5Ffam.c ./src/H5Fprivate.c ./test/istore.c Implementation of file families so 32-bit machines can access 64-bit files. ./src/H5Oprivate.h Removed H5O_NO_ADDR constant. ./config/freebsd2.2.1 ./config/linux Added -DH5G_DEBUG and -DH5F_DEBUG to the list of debugging flags. ./html/H5.format.html Changed some <offset>-sized things to <length>-sized things. ./src/H5AC.c ./src/H5ACprivate.h ./src/H5B.c ./src/H5Bprivate.h ./src/H5C.c ./src/H5D.c ./src/H5F.c ./src/H5Fcore.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fprivate.h ./src/H5Fsec2.c ./src/H5Fstdio.c ./src/H5G.c ./src/H5Gent.c ./src/H5Gnode.c ./src/H5Gpkg.h ./src/H5Gprivate.h ./src/H5Gshad.c ./src/H5Gstab.c ./src/H5H.c ./src/H5Hprivate.h ./src/H5MF.c ./src/H5MFprivate.h ./src/H5O.c ./src/H5Ocont.c ./src/H5Oistore.c ./src/H5Oprivate.h ./src/H5Ostab.c ./src/H5Ostdst.c ./src/H5pivate.h ./src/debug.c ./test/istore.c ./test/theap.c ./test/tohdr.c ./test/tstab.c Lots of changes caused by generalizing addresses. The haddr_t is now a struct, so you can no longer perform arithmetic on it. But since it's small, simple, and often used, storage is allocated like with an integer. But we always pass them around by reference. That is, when using an address in another struct, allocate space: struct my_struct { char *name; haddr_t address; } x; But when passing it to a function, pass by reference: H5F_addr_print (stderr, &(x.address)); Addresses should be initialized with H5F_addr_undef (&(x.address)); Functions for operating on addresses are in H5Flow.c and begin with H5F_addr_... Functions never return haddr_t or haddr_t*; they always pass them through arguments instead. A function that returns an address through an argument does so with its last argument and it is marked with `/*out*/'. Calls to such functions also mark output-only arguments with `/*out*/' ./src/H5Fsplit.c (new) A two-member family where all meta data goes in the first member and all raw data goes in the second member. ./src/H5B.c ./src/H5D.c ./src/H5F.c ./src/H5Ffamily.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5Fprivate.h ./src/H5Fsec2.c ./src/H5Fstdio.c ./src/H5Gnode.c ./src/H5H.c ./src/H5MF.c ./src/H5MFprivate.h ./src/H5O.c Differentiate between meta data storage and raw data storage. Provide a mechanism so that the file driver can extend the file to allocate more memory. ./src/H5E.c ./src/H5Epublic.c Added the error H5E_TRUNCATED to be reported when the file is shorter than the length recorded in the boot block. ./src/H5F.c Added H5F_locate_signature() so we only do it in one place now. ./INSTALL ./INSTALL_MAINT Just a couple clarifications. ./html/ExternalFiles.html ./html/storage.html Documents how external files work. ./test/hyperslab.c ./test/istore.c Fixed printf's on 64-bit machines. ./test/istore.c Added ifdef's to test the split file driver.
* [svn-r135] ./config/linuxRobb Matzke1997-11-0722-271/+769
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ./config/freebsd2.2.1 Rewritten to be more flexible. ./src/H5AC.c ./src/H5ACprivate.h ./src/H5F.c ./src/H5H.c ./src/H5Gpkg.h ./src/H5Gshad.c ./src/H5O.c ./test/istore.c ./test/tstab.c Accumulates cache statistics and displays the results on stderr when the file is closed if it was opened with H5F_ACC_DEBUG passed into H5F_open() ./src/H5B.c ./src/H5Bprivate.h ./src/H5Fistore.c ./src/H5Gnode.c Added more debugging which is turned on if H5B_DEBUG is defined on the compile command (see config/linux). Fixed a couple of bugs with left insertions which are used by the indexed storage stuff. ./src/H5Flow.c Fixed a memory leak. ./src/H5Fprivate.h Fixed warnings about shifting more than size of object. ./src/H5Fstdio.c Fixed seek optimizations back to the way Quincey originally had them. ./src/H5V.c Removed unused variables.
* [svn-r134] Changes since 19971023Robb Matzke1997-10-2411-41/+425
| | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/conclude.in Test work when `.' isn't in $PATH. ./src/H5F.c ./src/H5Fcore.c NEW ./src/H5Flow.c ./src/H5Fprivate.h ./src/H5Fsec2.c ./src/H5Fstdio.c ./src/Makefile.in ./MANIFEST Added the in-core temporary file driver as an exercise to clean up some of the H5F package. It speeds up `testhdf5 -o stab' by 25 percent! If you want to try it you'll need to recompile everything with `-DH5F_LOW_DFLT=H5F_LOW_CORE'. Don't expect testhdf5 to ever work since creating a file, closing it, and then opening it for read-only will fail.
* [svn-r133] ./MANIFESTRobb Matzke1997-10-2219-424/+1433
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ./src/Makefile.in Added new files. ./html/H5.apiv2.html Added documentation for group stuff. ./src/H5private.h ./src/H5E.c ./src/H5Epublic.h ./src/H5F.c ./src/H5Flow.c NEW ./src/H5Fprivate.h ./src/H5Fsec2.c NEW ./src/H5Fstdio.c NEW Low-level file driver is selected at runtime. ./src/H5Fprivate.h Got rid of `shift >= sizeof operand' warnings on big endian machines. ./src/H5Fistore.c ./test/istore.c Still working on indexed storage... ./src/H5H.c ./src/H5Hprivate.h Removed alignment constraints.
* [svn-r132] Examples directory 'examples' was added. It contains two ↵Elena Pourmal1997-10-222-0/+228
| | | | | | | | | | | programs test_write.c - creates an HDF5 file, writes first dataset, then closes the file, reopens it and adds the second data set test_read.c - finds datasets created by test_write.c program and prints out some information about datasets.
* [svn-r131] Tests hyperslabs.Robb Matzke1997-10-201-0/+1192
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* [svn-r130] Functions for vectors, arrays, hyperslabs, strides, ...Robb Matzke1997-10-202-0/+759
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* [svn-r129] Changes since 19970916Robb Matzke1997-10-2043-669/+3949
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/depend.in Fixed backslashes in sed script because the H5Gnode.c dependency info was disappearing. You'll have to rerun config.status to rebuild the Makefiles unless you use gnu make. ./config/conclude.in Also removes emacs backup files, TAGS, and svf backup files. ./config/linux Grouped gcc flags and added provisions for debugging vs. production. ./html/H5.format.html Updated messages 0x0008, 0x0009, and 0x000A. ./html/storage.html Documentation describing storage schemes. ./src/Makefile.in ./test/Makefile.in New source files. ./src/H5A.c ./src/H5Apublic.h ./src/H5C.c Changed VOIDP to void* in a couple places. ./src/H5AC.c ./src/H5ACprivate.h ./src/H5B.c ./src/H5Bprivate.h ./src/H5G.c ./src/H5Gnode.c ./src/H5Gprivate.h ./src/H5H.c ./src/H5O.c Removed `const' from some variables because H5G_node_found() wanted to modify it's udata argument. Removing const there caused it to cascade to these other locations. ./src/H5AC.c ./src/H5ACprivate.h ./src/H5B.c ./src/H5Gnode.c ./src/H5Gstab.c ./src/H5H.c ./src/H5O.c Added an extra argument to H5AC_find_f() and H5AC_protect(). This arg gets passed to the load() method. Also added an extra argument to the H5AC_find() macro. ./src/H5B.c ./src/H5Bprivate.h ./src/H5Gnode.c Extra argument passed to the sizeof_rkey() method. ./src/H5Fprivate.c ./src/H5Fistore.c (new) Added indexed I/O operations. ./src/H5G.c ./src/H5Gnode.c ./src/H5Gprivate.h Beginning to add H5G_open/close and related bug fixes. ./src/H5Oprivate.h ./src/H5Oistore.c (new) Added the H5O_ISTORE messsage (0x0008) for indexed storage of objects. ./src/H5private.h Added extra braces around both sides of the FUNC_ENTER() and FUNC_LEAVE() macros so FUNC_ENTER() can appear before declarations or after executable statements the second case is used by H5G_namei() to initialize output arguments to sane values before FUNC_ENTER() might return failure. int f () { int decl1; printf ("This happens before FUNC_ENTER()\n"); FUNC_ENTER (...); int another_declaration; ./src/H5B.c ./src/H5Bprivate.h ./src/H5Gnode.c Extra arguments for key encoding and decoding. ./src/H5E.c ./src/H5Epublic.h ./src/H5Fistore.c ./src/H5Oistore.c ./src/H5Oprivate.h Indexed, chunked, sparse storage (not ready for general consumption yet). ./src/H5V.c (new) ./src/H5Vprivate.h (new) ./test/hyperslab.c (new) Vector, array, and hyperslab functions. ./src/H5B.c ./src/H5Bprivate.h ./src/H5Fistore.c ./src/H5Gnode.c ./src/H5V.c ./src/H5Vprivate.h ./test/hyperslab.c Added functionality for indexed storage. ./src/H5F.c Fixed problems with seek optimizing. Recommend we disable it until we can implement it in the file/address class since all of HDF5 must be aware of it. ./src/H5O.c Fixed comeent speling erorr :-) ./MANIFEST Added new files. ./config/conclude.in Added the word `Testing' to the test cases. So if a test program is called hyperslab then the make output will contain the line `Testing hyperslab'. ./config/linux The default file I/O library is Posix section 2 on my linux machine so I can do some I/O performance testing. ./src/H5C.c ./src/H5Cprivate.h ./src/H5Cpublic.h Added ability to set size of indexed-storage B-tree. ./src/H5D.c ./src/H5E.c ./src/H5Epublic.h ./src/H5F.c ./src/H5Fprivate.h ./src/H5G.c ./src/H5Gnode.c ./src/H5Gpkg.h ./src/H5Gprivate.h ./src/H5Gpublic.h ./src/H5Gshad.c ./src/H5Gstab.c ./test/stab.c Changed `directory' to `group' in numerous places. ./src/H5private.h The FILELIB constant can be set on the compile command-line. ./src/istore.c NEW Tests for indexed storage.
* [svn-r127] Final tweaks for release.proto1Quincey Koziol1997-10-172-0/+10
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* [svn-r126] Changed name of "entire dataset" paramter from H5P_SCALAR to ↵Quincey Koziol1997-10-171-3/+3
| | | | | | H5P_ALL for H5Dread/H5Dwrite
* [svn-r125] Changed name of dataspace for "entire dataset" read/write from ↵Quincey Koziol1997-10-171-4/+4
| | | | | | H5P_SCALAR to H5P_ALL
* [svn-r124] Initial revision for prototype release.Quincey Koziol1997-10-152-0/+66
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* [svn-r123] Added tests for H5Pget_lrank and H5Pget_ldimsQuincey Koziol1997-10-151-1/+19
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* [svn-r122] Added user-level routines H5Pget_lrank and H5Pget_ldimsQuincey Koziol1997-10-153-10/+143
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* [svn-r121] Simplified fix for seek optimizing.Quincey Koziol1997-10-151-13/+1
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* [svn-r120] Removed debugging printf'sQuincey Koziol1997-10-151-7/+0
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* [svn-r119] Fixed seek optimization problems.Robb Matzke1997-10-151-6/+33
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* [svn-r118] Added H5P_init & H5T_init function calls which can be called to ↵Quincey Koziol1997-10-155-0/+59
| | | | | | guarantee that the H5T & H5P interfaces are initialized (from H5D_init_interface)
* [svn-r117] Added "seek position caching" code to shared file-records, which ↵Quincey Koziol1997-10-082-8/+36
| | | | | | trimmed 20% off the run-time for the current tests. (4.77s down to 3.89s)
* [svn-r116] Fixed typo which was preventing memory from being free'dQuincey Koziol1997-10-081-2/+2
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* [svn-r115] Corrected usage of H5Tsize function.Quincey Koziol1997-10-082-3/+3
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* [svn-r114] Mostly changes to add new parameter to the H5Ainit_group call. ↵Quincey Koziol1997-10-089-80/+306
| | | | | | The H5D, H5P & H5T interfaces now share datatypes & dataspaces properly also.
* [svn-r113] Added mechanism for reference counting IDs. This is to ↵Quincey Koziol1997-10-083-5/+136
| | | | | | | | | | | facilitate sharing an ID between multiple interfaces in memory. Changes included adding a parameter to the H5Ainit_group call for the function to call to free the structure associated with an ID when its reference count drops to zero and two new function calls: H5Ainc_ref & H5Adec_ref which increment and decrement the reference count of IDs. Its still possible to call H5Aremove_atom on a ID with multiple references, leaving dangling IDs in memory...
* [svn-r112] Added some symbolic names for '0'. Makes user's code easier to read.Quincey Koziol1997-09-264-1/+6
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* [svn-r111] Changed hdf5_file_t to H5F_t, split data struct ito two halves, fixedRobb Matzke1997-09-2431-915/+1210
| | | | problems when opening the same file more than once.
* [svn-r110] Fixed problems with cpu=i686Robb Matzke1997-09-241-6/+9
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* [svn-r109] Initialized test datasets better and cleaned up a few typos.Quincey Koziol1997-09-241-12/+23
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* [svn-r108] Changed all hatom_t types to hid_t. (Isn't 'sed' nifty.. :-)Quincey Koziol1997-09-2428-257/+257
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* [svn-r107] Changed tests for new symbol table stuffRobb Matzke1997-09-222-78/+77
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* [svn-r106] Fixed some symbol table bugs. Fixed a free memory read in H5Osdim.c.Robb Matzke1997-09-2217-1185/+1778
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* [svn-r105] *** empty log message ***Robb Matzke1997-09-221-0/+2
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* [svn-r104] Add site configuration file for HPUX 10.20 to help it compileQuincey Koziol1997-09-191-0/+6
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* [svn-r103] Added pointer cast to shut compiler up.Quincey Koziol1997-09-191-1/+1
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* [svn-r102] Removed ifdef now that code is working.Quincey Koziol1997-09-191-2/+0
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* [svn-r101] Fixed uninitialized memory read.Robb Matzke1997-09-194-17/+11
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* [svn-r100] Interim checkin for purify. Also contains H5G shadow stuff, changesRobb Matzke1997-09-1932-641/+1433
| | | | | | to int64 encode/decode to fix purify on 32-bit systems, changes to H5O_modify, changes to H5D.c to use H5F_open/close(), etc. Documentation will be mailed shortly...
* [svn-r99] Fixed backslashesRobb Matzke1997-09-191-1/+1
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* [svn-r98] *** empty log message ***Robb Matzke1997-09-191-0/+2
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* [svn-r97] Free'd temporary buffer.Quincey Koziol1997-09-181-0/+1
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* [svn-r96] Added "atexit" routines to each interface to free buffers ↵Quincey Koziol1997-09-1817-37/+300
| | | | | | allocated during runtime. Isolated but can't figure out how to fix bug reported with purify.
* [svn-r95] Tracked down memory bug.Quincey Koziol1997-09-183-3/+6
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* [svn-r94] Removed encode/decode from fast/cache message functions.Robb Matzke1997-09-174-102/+86
| | | | Fixed uninitialized bytes appearing in the data file object header.
* [svn-r93] *** empty log message ***Robb Matzke1997-09-171-0/+1
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* [svn-r92] It was quite simple, actually. The H5O_sim_dim_fast() should allocateRobb Matzke1997-09-161-11/+7
| | | | | | | space for the result if it gets the null pointer. See H5O_stab_fast() for an example. I notice that some where is something beging freed twice...
* [svn-r91] Bug fixes for multiple datasets in the file. Interim checkin, ↵Quincey Koziol1997-09-165-5/+7
| | | | | | theres still a problem with the simple dimensionality caching.
* [svn-r90] ./test/th5d.cRobb Matzke1997-09-162-1/+7
| | | | | | | | Changed the H5Mfind_name() return value and removed the call to H5Maccess(). ./test/th5p.c Removed unused variables.
* [svn-r89] ./src/H5Apublic.hRobb Matzke1997-09-164-287/+208
| | | | | | | | | | | | | | Removed H5_OID. ./src/H5D.c Fixed a few things to work better with symbol tables. Combined the H5D_oid_t and H5D_dataset_t structs. ./src/H5Dprivate.c Combined the H5D_oid_t and H5D_dataset_t types. ./src/H5M.c Removed the callback list for H5_OID.
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