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* Fix java include, h5watch and remove clang tool.Allen Byrne2019-12-103-29/+12
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* Add missing filenamesAllen Byrne2019-12-091-2/+3
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* Merge pull request #2113 in HDFFV/hdf5 from ↵Chris Hogan2019-12-091-0/+6
|\ | | | | | | | | | | | | ~CHOGAN/hdf5:chogan/develop/10934_release_txt to develop * commit 'c000061e6a6123d9cba7938bb8e6b94139cc3cc7': Add RELEASE.txt entry for Jira 10934
| * Add RELEASE.txt entry for Jira 10934Chris Hogan2019-12-091-0/+6
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* | Merge pull request #2031 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2019-12-0996-5021/+7278
|\ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'c087ef41b637686ae5e783bfb0a48e91dbe3f58e': (28 commits) Add H5Rdestroy calls to cleanup Remove problem tests for now Add new test reference HDFFV-10876 fix compare reference HDFFV-10876 ignore old reference API tests Add missing quotes Fix windows 10 compile error Correct indentation Revert declaration used in macro. Revert declaration deletion. HDFFV-10876 add note Address compile warnings Fix compile errors - mostly in jni HDFFV-10876 Update dump to match DDL spec Add extra line Adjust whitespace Update h5ls help and rework dump_mem routines for attrs Update create calls Add debug compile option as comment Update reference calls ...
| * | Add H5Rdestroy calls to cleanupAllen Byrne2019-12-081-0/+3
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| * | Remove problem tests for nowAllen Byrne2019-12-081-202/+102
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| * | Add new test referenceAllen Byrne2019-12-081-0/+2
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| * | HDFFV-10876 fix compare referenceAllen Byrne2019-12-081-2/+2
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| * | HDFFV-10876 ignore old reference API testsAllen Byrne2019-12-073-40/+26
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| * | Add missing quotesAllen Byrne2019-12-071-2/+2
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| * | Fix windows 10 compile errorAllen Byrne2019-12-071-6/+18
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| * | Correct indentationAllen Byrne2019-12-071-15/+15
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| * | Revert declaration used in macro.Allen Byrne2019-12-071-0/+1
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| * | Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-12-074-6/+22
| |\ \ | |/ / |/| | | | | | | | | | | | | | * commit '9c3900d0bf05a65e59cce6dc613b38b240599d93': Add note to RELEASE.txt for H5Sselect_adjust. Add RELEASE.txt note for H5Sselect_project_interesection Minor tweaks noticed while going over VOL documentation.
* | | Merge pull request #2082 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop_minor ↵Dana Robinson2019-12-063-6/+6
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | to develop * commit 'bbd4f7d2a0bea8f984868e2bf88dd1c5f5aa35e8': Minor tweaks noticed while going over VOL documentation.
| * | | Minor tweaks noticed while going over VOL documentation.Dana Robinson2019-12-063-6/+6
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* | | Merge pull request #2098 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:develop to ↵Neil Fortner2019-12-061-0/+8
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | develop * commit 'f6961c82bf3e7b848b071a0299dcc3753361e35d': Add note to RELEASE.txt for H5Sselect_adjust.
| * | | Add note to RELEASE.txt for H5Sselect_adjust.Neil Fortner2019-12-061-0/+8
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* | | Merge pull request #2093 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:develop to ↵Neil Fortner2019-12-061-0/+8
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | develop * commit '411241bea660411b99925edc8040139443fe8a74': Add RELEASE.txt note for H5Sselect_project_interesection
| * \ \ Merge branch 'develop' of ↵Neil Fortner2019-12-060-0/+0
| |\ \ \ | |/ / / |/| | | | | | | ssh://bitbucket.hdfgroup.org:7999/~nfortne2/hdf5_naf into develop
| * | | Add RELEASE.txt note for H5Sselect_project_interesectionNeil Fortner2019-12-061-0/+8
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| | | * Revert declaration deletion.Allen Byrne2019-12-071-0/+1
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| | | * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-12-061-0/+9
| | | |\ | |_|_|/ |/| | | | | | | | | | | * commit 'fa31520e25ec27140f8d0dfec859aede163d2201': Add RELEASE.txt note for HVLget_file_type()
* | | | Merge pull request #2090 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:develop to ↵Neil Fortner2019-12-061-0/+9
|\ \ \ \ | |/ / / | | | | | | | | | | | | | | | | | | | | develop * commit 'c7165f05444ce5ae6c5db50f2faf33023ba0eac0': Add RELEASE.txt note for HVLget_file_type()
| * | | Add RELEASE.txt note for HVLget_file_type()Neil Fortner2019-12-061-0/+9
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| | * HDFFV-10876 add noteAllen Byrne2019-12-061-0/+9
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| | * Address compile warningsAllen Byrne2019-12-069-55/+33
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| | * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-12-063-1/+4982
| | |\ | |_|/ |/| | | | | | | | | | | | | | * commit 'b816f4c4aaf9bc80dbde35158b520e693f135fa2': Fixed PR issues pointed out by Allen Remove the Copyright UofI per Larry's guidance Adds a new t_2Gio.c MPI test
* | | Merge pull request #2056 in HDFFV/hdf5 from HDFFV-10929_2GB_testing to developRichard Warren2019-12-063-1/+4982
|\ \ \ | |/ / |/| | | | | | | | | | | | | | * commit '7dfeab4863a25a79999fa1e5ede12a1aa685ca97': Fixed PR issues pointed out by Allen Remove the Copyright UofI per Larry's guidance Adds a new t_2Gio.c MPI test
| * | Fixed PR issues pointed out by AllenRichard Warren2019-12-062-2/+1
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| * | Remove the Copyright UofI per Larry's guidanceRichard Warren2019-12-062-0/+2
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| * | Adds a new t_2Gio.c MPI testRichard Warren2019-11-261-0/+4980
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| | * Fix compile errors - mostly in jniAllen Byrne2019-12-066-75/+113
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| | * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-12-0518-190/+217
| | |\ | |_|/ |/| | | | | | | | | | | | | | | | | | | | * commit '107bcbd3dfff51895c99ea3ff71afa0ce693a956': Implement support for using H5Dvlen_get_buf_size with non-native VOL connectors. Two fixes: (1) Set the version for reference datatype messge to H5O_DTYPE_VERSION_4. (2) Verify the decoded version for hyperslab selection. Add H5VL_MAP_OPTIONAL operation id (unused currently). Fix H5VL_token_t type and fix H5VL_loc_by_token to use H5VL_token_t * Change hdset_reg_ref_t and H5R_ref_t from arrays of unsigned char to structs containing those arrays. Encapsulating the arrays in this way makes it easier to write and think about pointers to these types, casts to/from these types, etc.
* | | Merge pull request #2076 in HDFFV/hdf5 from ~JSOUMAGNE/hdf5:type_fixes to ↵Jerome Soumagne2019-12-0511-177/+180
|\ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop * commit '7b03a1c03633d695b487642e54f897c715f8622e': Fix H5VL_token_t type and fix H5VL_loc_by_token to use H5VL_token_t * Change hdset_reg_ref_t and H5R_ref_t from arrays of unsigned char to structs containing those arrays. Encapsulating the arrays in this way makes it easier to write and think about pointers to these types, casts to/from these types, etc.
| * | | Fix H5VL_token_t type and fix H5VL_loc_by_token to use H5VL_token_t *Jerome Soumagne2019-12-057-33/+35
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| * | | Change hdset_reg_ref_t and H5R_ref_t from arrays of unsigned char toDavid Young2019-12-054-144/+145
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | structs containing those arrays. Encapsulating the arrays in this way makes it easier to write and think about pointers to these types, casts to/from these types, etc. An interesting side-effect that we probably should *not* rely on is that the struct-encapsulation changes the alignment so that some GCC warnings about casts that increase the alignment requirement of the operand go away. Warnings like that have to be taken seriously: I will add -Werror=cast-align to the default compiler flags so that they stop the build quickly. GCC warnings led me to some surprising casts in test/trefer.c. I found that it was possible to make many simplifications after introducing the struct-encapsulation that I described, above. In test objcopy_ref `same_file` is assigned but never used. Delete it.
* | | | Merge pull request #2073 in HDFFV/hdf5 from ↵Neil Fortner2019-12-053-8/+26
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~NFORTNE2/hdf5_naf:vol_vl_buf_size to develop * commit '12ac0587e7b9b18a56907aa78f68c084dd5b51b4': Implement support for using H5Dvlen_get_buf_size with non-native VOL connectors.
| * | | | Implement support for using H5Dvlen_get_buf_size withNeil Fortner2019-12-053-8/+26
| | | | | | | | | | | | | | | | | | | | non-native VOL connectors.
* | | | | Merge pull request #2079 in HDFFV/hdf5 from ↵Vailin Choi2019-12-054-4/+9
|\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~VCHOI/my_third_fork:bugfix/reference_ver_hyperslab_ver to develop * commit '1e10b3212ed5904b69d9f4c4bcb4d0122dfd7c77': Two fixes: (1) Set the version for reference datatype messge to H5O_DTYPE_VERSION_4. (2) Verify the decoded version for hyperslab selection.
| * | | | | Two fixes:Vailin Choi2019-12-054-4/+9
| | |/ / / | |/| | | | | | | | | | | | | | | | | | (1) Set the version for reference datatype messge to H5O_DTYPE_VERSION_4. (2) Verify the decoded version for hyperslab selection.
* | | | | Merge pull request #2078 in HDFFV/hdf5 from ~NFORTNE2/hdf5_naf:develop to ↵Neil Fortner2019-12-051-1/+2
|\ \ \ \ \ | |/ / / / |/| | | | | | | | | | | | | | | | | | | | | | | | develop * commit '73709ef2fa2494e675566dd3310c6c8ebac01c18': Add H5VL_MAP_OPTIONAL operation id (unused currently).
| * | | | Merge branch 'develop' of ↵Neil Fortner2019-12-0537-175/+156
| |\ \ \ \ | |/ / / / |/| | | | | | | | | ssh://bitbucket.hdfgroup.org:7999/~nfortne2/hdf5_naf into develop
| * | | | Add H5VL_MAP_OPTIONAL operation id (unused currently).Neil Fortner2019-12-051-1/+2
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| | | | * HDFFV-10876 Update dump to match DDL specAllen Byrne2019-12-0516-1377/+1481
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| | | | * Merging in latest from upstream (HDFFV/hdf5:refs/heads/develop)Allen Byrne2019-12-0537-175/+156
| | | | |\ | |_|_|_|/ |/| | | | | | | | | | | | | | * commit 'c7b3d6d6a5c1d376812e17c0ddb26f55334a2c59': Yanked -Wc++-compat from the flags used to build the C library in both the Autotools and CMake.
* | | | | Merge pull request #2072 in HDFFV/hdf5 from ↵Dana Robinson2019-12-0537-175/+156
|\ \ \ \ \ | |/ / / / |/| | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:cpp_warning_disable to develop * commit '1ad02a445920578654d257bb66aa1e8e7e368018': Yanked -Wc++-compat from the flags used to build the C library in both the Autotools and CMake.
| * | | | Yanked -Wc++-compat from the flags used to build the C library in bothDana Robinson2019-12-0437-175/+156
| | | | | | | | | | | | | | | | | | | | the Autotools and CMake.
| | | | * Add extra lineAllen Byrne2019-12-042-0/+2
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