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* [svn-r22921] Description:Quincey Koziol2012-10-189-263/+196
| | | | | | | | | | | | | | | | | | | | | | | | | Review Coverity changes and bring them back to trunk. (QK & JK) r20402: Added #includes for h5tools.y or h5tools_utils.h as required to remedy implicit function declarations which caused compiler warnings and coverity issues 703-4 and 708-11. r20414: This is related to the previous checkin r20399. There were incorrect updates which caused incorrect behavior when no file was given. Also possible segfault when handling hyperslab options. Simplify the code changes. r20449: Description: Modified H5E_walk2_cb to check return value of H5I_object_verify. r20450: fixed coverity 813 Tested on: Mac OSX/64 10.8.2 (amazon) w/C++, FORTRAN, debug & threadsafe (too minor to require h5committest)
* [svn-r22915] Description:Quincey Koziol2012-10-176-166/+121
| | | | | | | | | | | | | | | | | | | | | | | Bring Coverity changes back to trunk: r20399: Change parse_command_line to free hand structure on error and only "leave()" at end of main. r20400: Purpose: Fix coverity issue 592 Description: Added void cast to call to H5F_sfile_assert_num() in H5F_term)interface(). There is no need to check the return value of this function in general, and there would be nothing to do even if it did fail. r20401: Added free(src_sizes) and free(src_offset). --gh Tested on: Mac OSX/64 10.8.2 (amazon) w/C++, FORTRAN, threadsafe (too minor for h5committest)
* [svn-r22914] I checked in the conversion function H5T__conv_enum_numeric ↵Raymond Lu2012-10-174-9/+182
| | | | | | (numeric type means integer or floating number) and the C test for it. This is the work for Chicago. Tested on jam, koala, and ostrich.
* [svn-r22908] Reverted changes in revision 22819Larry Knox2012-10-1645-124/+0
| | | | Tested with h5committest on jam, koala and ostrich.
* [svn-r22904] Fixed typo in name of cmake config file. Needed for installing ↵Allen Byrne2012-10-161-1/+1
| | | | multiple versions on windows.
* [svn-r22897] Cleaned up the comments, formatted for automatic documentation.Scot Breitenfeld2012-10-131-21/+20
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* [svn-r22896] Updated the robodoc resource file with new keywords and new optionsScot Breitenfeld2012-10-131-7/+75
| | | | for generating the documentation.
* [svn-r22881] Correct datatype of scalar array of doublesAllen Byrne2012-10-106-24/+22
| | | | Tested: local linux
* [svn-r22879] Bug Fix: HDFFV 8017Albert Cheng2012-10-101-0/+16
| | | | | | | | | | | | | | | dt_arith would fail in Lion and Mountain Lion system when GCC version 4.2.1 is used with --enable-production. Somehow the -O optimization will fail some of the hard conversion code. Solution: This is just a temporary patch by detecting if this is a Lion or Mountain Lion system using GCC 4.2.1, then just remove the any -O option from the PROD_CFLAGS. A better fix should be deviced later. Tested: Duck(lion) and Owl (mountain lion) tested with --enable-production. Also tested in Fred and Tejeda, both Snow Leopard systems to verify there is no undesired side effect.
* [svn-r22878] Added bug fixes and enhancements since the last release.Scot Breitenfeld2012-10-101-0/+20
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* [svn-r22877] Description:Binh-Minh Ribler2012-10-101-1/+1
| | | | | | Changed uint to unsigned so that no hdf5-specific header file is needed. Platform tested: Linux/32 2.6 (jam) - very minor
* [svn-r22876] Fixed exporting subroutines that will not be compiled if ↵Scot Breitenfeld2012-10-092-7/+22
| | | | | | --enable-fortran2003 was not used.
* [svn-r22866] Description:Quincey Koziol2012-10-0512-122/+184
| | | | | | | | | Correct use of 'uint8_t' parameter type in public header file (which was causing Windows builds to fail). Tested on: Mac OSX/64 10.7.5 (amazon) w/debug (too minor to require h5committest)
* [svn-r22859] Fixed new functions that are used in the _F03 files, updated to ↵Scot Breitenfeld2012-10-031-5/+5
| | | | | | | reflect the correct module they are in.
* [svn-r22857] Change def list of RGET_REGION to match other types declarationsAllen Byrne2012-10-031-1/+2
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* [svn-r22854] Fixed issues with default 8-byte real and default 8-byte ↵Scot Breitenfeld2012-10-036-12/+15
| | | | | | integers and the new H5O routines. Tested: jam (gcc,intel)
* [svn-r22853] Change def list of RGET_REGION to match other types declarationsAllen Byrne2012-10-021-2/+1
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* [svn-r22852] Add new files to library file listsAllen Byrne2012-10-021-0/+2
| | | | Tested: local linux
* [svn-r22849] Updated with changes.Albert Cheng2012-10-011-0/+3
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* [svn-r22848] Bug fix: HDFFV-8156Albert Cheng2012-10-012-21/+13
| | | | | | | | | | | | | benchpar.c is compiled when configure --enable-build-all --enable-paralllel. But it failed to compile. It is decided to retire or move it to example. I removed it from the PARA_BUILD_ALL list so that --enable-build-all will not fail. The program file still need to be moved. Tested: Koala using --enable-build-all --enable-parallel. --in parallel mode.This line, and those below, will be ignored-- M perform/Makefile.in M perform/Makefile.am
* [svn-r22846] Snapshot version 1.9 release 131HDF Tester2012-09-3014-29/+31
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* [svn-r22845] Purpose: Misc fixesBinh-Minh Ribler2012-09-2831-224/+50
| | | | | | | | | | Description: Fixed miscellaneous inconsistencies and typos, which also took care of the failure in Packet Table test on daily test today. Platforms tested: Linux/32 2.6 (jam) Linux/64 2.6 (koala) Mac Lion (duck)
* [svn-r22843] Renamed variable to match C.Scot Breitenfeld2012-09-282-3/+3
| | | | Tested: jam (gnu, mpich)
* [svn-r22842] Fixed typo in variable.Scot Breitenfeld2012-09-281-1/+1
| | | | Tested: jam (gnu,mpich)
* [svn-r22839] removed unused variable.Scot Breitenfeld2012-09-281-1/+0
| | | | tested: jam (pgi compiler)
* [svn-r22838] Fixed typo in variable name.Scot Breitenfeld2012-09-281-1/+1
| | | | Tested: jam (pgi compiler)
* [svn-r22837] Description:Binh-Minh Ribler2012-09-271-0/+2
| | | | | | Added c++/src/H5Location.h c++/src/H5Location.cpp
* [svn-r22836] Purpose: Fix bug HDFFV-533 and add other missing functionsBinh-Minh Ribler2012-09-2723-924/+1148
| | | | | | | | | | | | | | | | | | | | | | Description: In this bug, H5File doesn't have the ability to create attribute. The following changes will provide that functionality and several others that were also missing: - Added an abstract class H5Location in between IdComponent and H5Object. - New class structure of IdComponent, H5Location, H5Object, H5File IdComponent | H5Location / \ H5Object H5File - Wrappers in H5Object were moved to H5Location because the related C functions take either file, group, dataset, or named datatype ID. - Added wrapper for H5Rget_obj_type2 - Added tests for file attributes and H5Rget_obj_type2 wrapper Platforms tested: Linux/32 2.6 (jam) Linux/64 2.6 (koala) SunOS 5.10 (linew)
* [svn-r22834] Documented HDFFV-8069 fix.Albert Cheng2012-09-271-0/+3
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* [svn-r22832] Update the CMake reference files list correctly for newly added ↵Jonathan Kim2012-09-271-24/+41
| | | | encoded property list files.
* [svn-r22830] Bug fix: HDFFV-8069 AIX config file Fortran flags need fix Albert Cheng2012-09-271-4/+4
| | | | | | | | | | | | | Description: The Fortran compiler flags were all set to "-O". They should be different setting for different situations. E.g, "-g" for debug and "-pg" for profile, etc. Fix: set them to appropriate different values. Tested: in Remote ADA AIX machines using 3 different settings: configure --enable-fortran --enable-cxx # default to --disable-production configure --enable-fortran --enable-cxx --enable-production configure --enable-fortran --enable-cxx --disable-production
* [svn-r22829] Fixed merge mistake, merge removed part of the subroutine.Scot Breitenfeld2012-09-271-0/+100
| | | | tested: jam (intel)
* [svn-r22828] Scot Breitenfeld2012-09-271-0/+1
| | | | | | HDFFV-8007:Add missing H5O Fortran functions Added new F03 test file for new H5O functions.
* [svn-r22827] HDFFV-8007: Add missing H5O Fortran functions.Scot Breitenfeld2012-09-2715-130/+2107
| | | | | Tested: jam(gnu,intel)
* [svn-r22826] Fix for: HDFFV-7903 Fortran problem writing control character ↵Scot Breitenfeld2012-09-275-0/+10
| | | | | | to a dataset reconfigured
* [svn-r22825] Fix for: HDFFV-7903 Fortran problem writing control character ↵Scot Breitenfeld2012-09-278-11/+46
| | | | | | to a dataset Tested: (jam, gfortran)
* [svn-r22824] FIX: HDFFV-8118: Support Fortran compiler flags that change the ↵Scot Breitenfeld2012-09-2712-244/+437
| | | | | | default size of integer and real Tested: jam(gnu,intel), machine with gcc 4.7 and C long double = 16 bytes.
* [svn-r22823] Fix for HDFFV-7658: Add FORTRAN interface for ↵Scot Breitenfeld2012-09-271-0/+5
| | | | | | | H5Pget_mpio_actual_io_mode API routine Test: jam (gnu)
* [svn-r22822] Fix for HDFFV-7658: Add FORTRAN interface for ↵Scot Breitenfeld2012-09-274-3/+131
| | | | | | | H5Pget_mpio_actual_io_mode API routine Test: jam (gnu)
* [svn-r22820] Description:Quincey Koziol2012-09-271-0/+24
| | | | | Update the CMake reference files list for newly added encoded property list files.
* [svn-r22819] Added H5BLD_STATIC and HDF5_USE_SHLIB to configure.ac so that ↵Larry Knox2012-09-2745-0/+124
| | | | | | if configured with --disable-static the default for HDF5_USE_SHLIB in the compile scripts will be changed to yes. This is a fix for HDFFV-8141, where the compile scripts try to link to non-existant static hdf5 libraries. Tested on jam,koala,ostrich(h5committest) and other THG machines.
* [svn-r22817] Description:Quincey Koziol2012-09-263-0/+5
| | | | Update CMake files for new encode/decode property list files.
* [svn-r22816] Failed on Mac for testing tscalarintsize and tscalarattrintsize ↵Jonathan Kim2012-09-262-4/+8
| | | | | | | | | from daily test. Larry mentioned that intel compiler was used on Mac for testing. Allen requested comment it out. "It is not scheduled for 1.8, I created the file for Java testing. Actually I have to create windows versions because of the use of floating point." - Allen
* [svn-r22815] Issue 8164 - test_image.c printed an extra "FAILED" after it ↵Raymond Lu2012-09-261-1/+1
| | | | | | | | succeeded. A test function doesn't return 0 after it succeeds. It goes down to the error handling branch and prints "FAILED". The fix is adding "return 0;" in the end of the function. Tested on jam - simple change.
* [svn-r22808] Description:Quincey Koziol2012-09-251-25/+24
| | | | Correct location of property list files.
* [svn-r22807] Description:Quincey Koziol2012-09-2566-320/+6127
| | | | | | | | | | | | | | | | | | | | | Add encode/decode API routines for property lists: H5Pencode/H5Pdecode. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (ostrich) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (ember) w/Intel compilers, w/parallel, C++ & FORTRAN, in production mode Mac OS X/32 10.7.3 (amazon) in debug mode Mac OS X/32 10.7.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode Mac OS X/32 10.7.3 (amazon) w/parallel, in debug mode
* [svn-r22805] Purpose:Jonathan Kim2012-09-247-22/+150
| | | | | | | | | | | | | HDFFV-8012 - h5repack changes max dims and cause failure if only "-f none" is used without changing layout for chunked dataset when a chunk dim is bigger than a dataset dim Description: "h5repack -f <obj>:NONE <file.h5> out.h5" command failed if source file contains chunked dataset and a chunk dim is bigger than a dataset dim. Another issue is that the command changed max dims if chunk dim is smaller than the dataset dim. These issue occurred when dataset size is smaller than 64k (compact size limit) Fixed them. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), cmake (jam)
* [svn-r22802] Snapshot version 1.9 release 130HDF Tester2012-09-2314-29/+29
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* [svn-r22799] Documented the retiremen of mpi-perf.Albert Cheng2012-09-221-0/+2
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* [svn-r22795] Create scalar test files and h5dump tests.Allen Byrne2012-09-209-15/+703
| | | | Tested: local linux
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