| Commit message (Collapse) | Author | Age | Files | Lines |
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incorportated all
the constants and from dumputil to to the tools lib and merged h5dump_fixtype
together. I had to add an extra parameter to the function to specify what action
should be taken when it hits H5T_STRING in the case statement. if the parameter
(strDUAction) is true then it does what it use to do in dumputil but if it is false
then it will do what it originally did in this file.
I also put the h5dump_sprint functions into the same file. it isn't really merged yet.
i just wanted to get everything into a file and then worry about the merging of this
function. The toolslib way of h5dump_sprint takes an extra parameter. If this
parameter is set to NULL then it will do the dumputil's version of this function.
like i said this is just the first step i am taking. it will be merged better later.
the rest of the changes to the other files were related to the above changes.
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DatatypesEnum.html
EnumMap.gif
Added enumeration datatypes -- First pass, only minimal editing.
Intro paragraph in Datatypes.html; details in DatatypesEnum.html.
EnumMap.gif is a figure for DatatypesEnum.html.
Tools.html
Added new h5toh4 supported object and data type.
H5.intro.html
Corrected transposed "start coordinates" in Example 1.
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(This file may have been replaced by multiple files already.)
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yesterday.
changed ifdef WIN32 && _HDF5USEDLL_ to if defined(WIN32) && defined(_HDF5USEDLL_)
and did something similar for the not cases.
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----------------------
./tools/h5ls.c
Added a `--address' (`-a') switch which causes h5ls to display
file addresses for raw data. For contiguous datasets it's just
a nice simple number, but for chunked datasets it's a list of
logical dataset coordinates, file addresses, filter masks, and
storage sizes.
Changed `--dump' switch to `--data'.
./src/H5D.c
./src/H5F.c
./src/H5Fprivate.h
Enhanced the indexed-storage B-tree iterator so it can dump
raw data addresses (and other info) to the standard error
stream.
Added H5Ddebug() so h5ls has a way to dump addresses for
datasets. I'm not sure what else this API function should do,
so I think we should discuss it before we document it. So far,
h5ls is the only thing that uses it, and we can easily change
that.
./src/H5Tconv.c
./test/dtypes.c
Finally had a chance to verify Paul's H5T_conv_s_s (general
string to string conversions) bug fixes and incorporate them
into H5T_conv_f_f (general floating-point to floating-point
conversions) and H5T_conv_i_i (general integer to integer
conversons). Thanks Paul.
./src/H5D.c
./src/H5S.c
./src/H5Sprivate.h
Added performance timers around data space read and write
callbacks. They were already there for the gather/scatter
callbacks.
The timings for read/write callbacks are displayed along with
gather/scatter when data space debugging is turned on.
./bin/iostats
Updated to print totals. Added a `--fast' option that doesn't
do any output except the totals and is much faster.
./bin/trace
Changed __unused__ to UNUSED to match source code.
./config/gnu-flags
Updated error message for pgcc. I've sent bug reports to the
pgcc people but the new version still has the same bug.
./configure.in
./config/conclude.in
./config/depend.in
Fixed dependencies for non-GNU makes when run in a directory
other than the hdf5 source tree.
Updated GNU `make dep' rules to copy the distributed
dependencies for non-GNU makes into the source tree when run
in some other directory.
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a fileindex
hi and lo. this number and the dev id will allow us to determine if the
file is currently open on NT
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the dll version
it was causing some crashes otherwise
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parallel I/O T3E port
exposed. These are more changes that everyone should pick up.
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working again...
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Bug fix
Description:
dumper repeated output after the 1st 4 rows.
The bug was because the dumper was reading just a small slice a time
from the file dataset but did not adjust the offset in the file-space.
So, it just kept reading the same first slice.
Solution:
Stole the offset-adjustion code from the routine that h5ls uses.
Platform Tested:
O2K.
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----------------------
./tools/h5tools.c
./tools/h5tools.h
Finally fixed a long-standing bug that caused core dumps if
a compound datum rendered to more than some number of
characters (we kept bumping up the limit at the risk of
violating stack size limits on some machines). The fix works
only on systems that have the vsnprintf() function (otherwise
a 4kB limit is imposed, which if violated probably dumps
core). If vsnprintf() is present then the library dynamically
allocates space for the output string.
Also made it possible to control how compound data is rendered
across multiple lines of output by allowing the caller to
specify where optional line-breaks get inserted. The output
functions split up the value at one or more optional
line-breaks to prevent it from wrapping around the screen.
If a datum doesn't fit on the current line but would fit on
the next line then it is printed on the next line regardless
of whether optional line-breaks would have prevent wrapping
around the screen. This makes it easier to find the beginnings
of compound data values. This feature is disabled by default
but can be enabled by the application.
If a datum doesn't fit on the current line and the previous
datum also occupied more than one line then we move to the
next line before printing. This makes it easier to find the
beginnings of compound data values but prevents the output
from looking fragmented if there are only a few long values
among mostly short values. This feature is disabled by
default but can be enabled by the application.
The application can control the printf() formats used for all
the native data types. The defaults are what the library used
to use: %g, %ld, %lu, %d, and %u
./tools/h5ls.c
Compound datatype values can now be split across multiple
lines of output instead of just wrapping. Also, when lots of
compound values are too long they all start at the beginning
of a line. This only required about 10 lines of changes in the
setup for tools library calls (I didn't modify the h5dump
program because it uses its own version of the tools library
that forked off long ago).
Added code for Win32 which is unable to cast `unsigned long
long' to `double'. If the dataset size exceeds (2^63)-1 then
the percent utilization is not displayed (this is easily
possible with chunked datasets). This is untested yet.
./configure.in
./src/H5config.h.in
./src/H5.c
./src/H5private.h
Check for vsnprintf() and provide a simple, stupid definition
if it isn't available. The stupid definition just calls
vsprintf() and ignores the second argument. This can result in
buffer overflows in h5ls and h5dump since vsprintf() is an
unsafe function (and anyone can create an hdf5 file that runs
an arbitrary command from h5ls and h5dump in that case)!
./config/conclude.in
Remove more *.o files for `make clean'
./src/H5A.c
./src/H5D.c
./src/H5F.c
./src/H5I.c
./src/H5Iprivate.h
./src/H5P.c
./src/H5R.c
./src/H5RA.c
./src/H5S.c
./src/H5T.c
./src/H5TB.c
Cleaned up a memory leak during H5_term_library() by allowing
H5I_clear_group() to skip items that couldn't be freed. This
allows the item to remain in the group until we can free it
later.
./src/H5F.c
The H5F_close_all() function fails if a file cannot be closed.
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Eliminated most compiler complains. Changed Tflops to use
the /pfs_grande file systems. (Old /pfs is retired.)
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RM_H5Front.html
"H5A Annotation" Interface corrected to "H5A Attribute" interface.
RM_H5G.html
H5Glink loc_id description corrected.
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Changed "last modified" date. (Forgot to change it for preceding checkin.)
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Fixed Bug #292 -- Errors in array-order transversal (C and Fortran orders
were reversed) and a minor copy edit.
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----------------------
./config/commence.in
./examples/Makefile.in
./test/Makefile.in
./testpar/Makefile.in
./tools/Makefile.in
Fixed some dependency problems in Makefiles. If the library
version is updated then everything gets recompiled.
./src/H5G.c
./src/H5R.c
Failure return value for object type functions is now
H5G_UNKNOWN as documented.
./src/H5Shyper.c
./src/H5Spoint.c
Fixed an unused argument warning.
./tools/h5debug.c
Fixed a call to H5F_block_read() since the 4th argument is
different now.
./tools/h5ls.c
Added a space between the object name and class to make the
output readable when the object name is longer than 24
characters.
C
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----------------------
./src/H5B.c
./src/H5D.c
./src/H5F.c
./src/H5Farray.c
./src/H5Fcore.c
./src/H5Ffamily.c
./src/H5Fistore.c
./src/H5Flow.c
./src/H5Fmpio.c
./src/H5Fprivate.h
./src/H5Fsec2.c
./src/H5Fsplit.c
./src/H5Fstdio.c
./src/H5Gnode.c
./src/H5HG.c
./src/H5HL.c
./src/H5O.c
Changed H5F_block_read/write() to take a file transfer
property list instead of just a parallel I/O mode. This will
allow us to pass additional parameters to the I/O functions
without having so many arguments to worry about.
This fixes a bug I introduced last Friday for parallel HDF5
./src/H5B.c
Fixed decoding of B-tree keys when iterating through the
leaves of the B-tree. This fixes a bug for applications that are
adding new entries to groups and also listing the groups.
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to "H5D_transfer_t xfer_mode". H5F_mpio_write/read are i/o driver
calls as low as H5F_low_write. This class of functions are invoked
with the xfer_mode argument.
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property list.
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tselect.c to make
it more portable.
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buffer size for
H5Dread/H5Dwrite to use to allow the I/O calls to break up a user's buffer into
pieces that are at least as large as the sequence of bytes being written in the
fastest changing dimension.
Also fixed a hard-to-find bug in the hyperslab I/O routines which could cause
data to be corrupted when writing out fields to compound datatype data with
background preservation turned on and hyperslabs which were large enough to
require two I/O passes on a hyperslab block. A pretty obscure situation, but
it would be worthwhile for users to upgrade to this code in order to be certain
that correct data is being written.
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invalid memory
accesses.
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buffer into
pieces that are at least as long as the smallest sequence to write/read in the
fastest changing dimension.
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