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* [svn-r1149] ./configure.inRobb Matzke1999-03-1812-972/+343
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./src/H5private.h Temporarily commented out the code that tries to link a simple MPI-IO application because I'm not sure how to pass $LDFLAGS and $LIBS to the compiler. Removed the `--enable-parallel=ibm' switch because the library we link with is either -lmpcc or -lmpcc_r but not both. The only way to tell is to see what compiler was specified (mpcc or mpcc_r) but if that compiler is specified then we don't need any libraries (the compiler script supplies them). That leaves just two choices: the user must use a compiler script: CC=mpcc ./configure or the user must state which library is desired: LDFLAGS='-lmpcc' ./configure --enable-parallel Checks for <setjmp.h>, longjmp(), and signal(). We don't check for setjmp() because it could be a macro (in fact, Posix requires it to be a macro) and if longjmp() is present then setjmp() is probably present too ;-) ./src/H5detect.c The alignment detection loop uses SIGBUS and setjmp/longjmp instead of fork/wait in order to get around bugs with forking in conjunction with mpich. This hasn't been tested on the SP-2 yet but it does work on the DEC Alpha. ./test/Makefile.in ./testpar/Makefile.in ./tools/Makefile.in Changed the order that libraries are linked so -lhdf5 is always before $LDFLAGS.
* [svn-r1148] SnapshotRobb Matzke1999-03-182-2/+2
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* [svn-r1147] Added test for object references to named datatypes.Quincey Koziol1999-03-181-5/+62
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* [svn-r1146] Added support for object references to named datatypes.Quincey Koziol1999-03-183-4/+52
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* [svn-r1145] Added test for object references to groups.Quincey Koziol1999-03-181-10/+34
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* [svn-r1144] Added support for object references to groups.Quincey Koziol1999-03-183-12/+73
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* [svn-r1143] SnapshotRobb Matzke1999-03-162-2/+2
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* [svn-r1142] Purpose:Paul Harten1999-03-151-1/+1
| | | | | | | | | | Bug fix Solution: Fixed a small typo in config/solaris2.x. Platform tested: Solaris2.5
* [svn-r1141] SnapshotRobb Matzke1999-03-142-2/+2
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* [svn-r1140] Added tests for H5Rget_object_typeQuincey Koziol1999-03-121-0/+6
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* [svn-r1139] Added code for H5Rget_object_typeQuincey Koziol1999-03-123-26/+138
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* [svn-r1138] Changes since 19990304Robb Matzke1999-03-1215-644/+715
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/*-aix4.* [REMOVED] ./config/*-aix4.x [NEW] ./config/solaris2.5 [REMOVED] ./config/solaris2.x [NEW] ./configure.in ./configure [REGENERATED] ./MANIFEST Changed the names of the IBM-SP2 config files by replacing the minor version numbers with an `x'. The solaris config warns about old versions of gcc. The RUNSERIAL value is set to the empty string by default. The config/* file (or user) can override it by setting it to some other value. The `--enable-parallel' with no flags turns on the HAVE_PARALLEL constant in the source code but doesn't add any MPI or MPI-IO libraries to the link line. If we are compiling for parallel then configure checks that we can actually link a very simple program. This has the benefit of detecting config errors before we waste time compiling the entire library. Configure recognizes `mpcc_r' as a parallel compiler. ./src/H5A.c ./src/H5Apublic.c Fixed some compiler warnings. Changed the return type of H5Aget_name() from hssize_t to ssize_t because the name can never be larger then memory.
* [svn-r1137] SnapshotRobb Matzke1999-03-121-1/+1
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* [svn-r1136] Updated test for expanded API.Quincey Koziol1999-03-111-2/+2
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* [svn-r1135] Expanded API for reading lists blocks/points to allow for just a ↵Quincey Koziol1999-03-114-26/+70
| | | | | | portion of the block/point-list to be read at a time.
* [svn-r1134] SnapshotRobb Matzke1999-03-111-1/+1
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* [svn-r1133] Added tests for region references and new dataspace/selection ↵Quincey Koziol1999-03-101-6/+88
| | | | API functions.
* [svn-r1132] Dataset region references are now finished and working ↵Quincey Koziol1999-03-107-68/+700
| | | | | | | | | | | | | | | | | | | | correctly. Also, there are five new API functions for querying selections: H5Sget_select_hyper_nblocks - retrieves the number of hyperslab blocks in current hyperslab selection for a dataspace H5Sget_select_elem_npoints - retrieves the number of element points in current element selection for a dataspace H5Sget_select_hyper_blocklist - retrieves a list of the hyperslab blocks in current hyperslab selection for a dataspace H5Sget_select_elem_pointlist - retrieves a list of the element points in current element selection for a dataspace H5Sget_select_bounds - retrieves a n-dimensional bounding box containing current selection.
* [svn-r1131] SnapshotRobb Matzke1999-03-101-1/+1
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* [svn-r1130] Make HDsnprintf to be compiled only if snprintf is not availableAlbert Cheng1999-03-091-0/+2
| | | | | in the local system. Tested in O2K.
* [svn-r1129] Test bugs fixed in T3E port.Albert Cheng1999-03-092-12/+21
| | | | | | | | | external.c: Test assumed sizeof(int) is 4. Changed the hard-coded values to values depending on the native sizeof(int). th5s.c: Changed hardcoded old filenames to macro FILE.
* [svn-r1128] Changes for T3E port.Albert Cheng1999-03-094-7/+17
| | | | | | | | | | | | | | | | | H5Flow.c: Document previous changes (same changes committed by Robb first.) H5Fprivate.h: Change DECODE macros to do sign extension. (Sign extension can be skipped if machines use the exact sizes.) H5Sall.c: Fixed a typo in return value. H5private.h: Fixed a typo and also changed the strategy of the int16_t and uint16_t typedef. Now will use short as long as it is at least 2 bytes big.
* [svn-r1127] Removed -64 from default setting. Irix workstations running 32 bitAlbert Cheng1999-03-091-1/+1
| | | | | | | OS cannot handle the 64 bit instruction sets. Let the local system default takes care of preferred machine code. Tested on both IRIX and IRIX64 platforms.
* [svn-r1126] Undoing previous change. src library won't compile.Dan Wells1999-03-091-1/+1
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* [svn-r1125] The linesDan Wells1999-03-091-1/+1
| | | | | | | PABLO_SAVE (ID_ ## func_name); \ H5TRACE_DECL; had to be switched because the asci red machine wouldn't compile the source when -DHAVE_PABLO was used.
* [svn-r1124] Changed the names of the pablo masksDan Wells1999-03-097-7/+7
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* [svn-r1123] Updates for bug fixes and new entry points in files from src ↵Dan Wells1999-03-098-680/+927
| | | | directory.
* [svn-r1122] Fixed a typo. DEBUG_FLAGS should be DEBUG_CFLAGS.Albert Cheng1999-03-092-3/+3
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* [svn-r1121] Added Cray T3E recognition. OS named as unicosmk.Albert Cheng1999-03-092-0/+7
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* [svn-r1120] SnapshotRobb Matzke1999-03-092-2/+2
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* [svn-r1119] Purpose:Paul Harten1999-03-081-2/+4
| | | | | | | | | | | | | | | | | | | Bug fix Problem: On Solaris2.5, once the library has been compilied with any type of optimization, a bus error comes up in the "dtypes" test. Solution: The problem appears to be in the compilers' version of memcpy() that is used when optimized. Instead of substituting HDmemmove(), on Solaris, the problem is also taken care of by preparing the second argument to HDmemcpy(). The datatype pointer is copied to a separate char pointer which is then used as the second argument to HDmemcpy(). For some reason, it isn't enough to simply cast the datatype pointer. Platform tested: Solaris2.5
* [svn-r1118] SnapshotRobb Matzke1999-03-052-2/+2
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* [svn-r1117] Changes since 19990303Robb Matzke1999-03-0416-194/+291
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./configure.in ./configure [REGENERATED] The path for a command is calculated explicitly the hard way because `type -path' isn't portable. ./config/freebsd ./config/linux-gnu ./config/linux-gnulibc2 Changed the way files reference each other. ./config/gnu-flags [NEW] ./config/dec-flags [NEW] These files figure out what flags to pass to certain compilers so we can reuse code in more than one config/* file. They also have better warning messages when old compilers are used. ./config/linux-gnulibc1 ./config/dec-osf4.x These files use the new *-flags files. ./src/H5D.c ./src/H5Onull.c ./src/H5Tconv.c ./tools/h5ls.c Fixed a compiler warning. ./src/H5detect.c Added a better comment to the top of the generated file.
* [svn-r1116] SnapshotRobb Matzke1999-03-042-2/+2
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* [svn-r1115] Changes since 19990302Robb Matzke1999-03-0310-167/+364
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] Improvements for parallel library. If you have a properly working mpicc you should be able to just say: $ CC=mpicc ./configure and you will see checking for mpirun... /usr/local/mpi/bin/mpirun checking for parallel support files... skipped checking how to run on one processor... /usr/local/mpi/bin/mpirun -np 1 checking how to run in parallel... /usr/local/mpi/bin/mpirun -np $$NPROCS To quote from the INSTALL file.... *** Parallel vs. serial library The HDF5 library can be configured to use MPI and MPI-IO for parallelizm on a distributed multi-processor system. The easy way to do this is to have a properly installed parallel compiler (e.g., MPICH's mpicc or IBM's mpcc) and supply that executable as the value of the CC environment variable: [NOTE: mpcc is not tested yet] $ CC=mpcc ./configure $ CC=/usr/local/mpi/bin/mpicc ./configure If no such wrapper script is available then you must specify your normal C compiler along with the distribution of MPI/MPI-IO which is to be used (values other than `mpich' will be added at a later date): $ ./configure --enable-parallel=mpich If the MPI/MPI-IO include files and/or libraries cannot be found by the compiler then their directories must be given as arguments to CPPFLAGS and/or LDFLAGS: $ CPPFLAGS=-I/usr/local/mpi/include \ LDFLAGS=-L/usr/local/mpi/lib/LINUX/ch_p4 \ ./configure --enable-parallel=mpich If a parallel library is being built then configure attempts to determine how to run a parallel application on one processor and on many processors. If the compiler is mpicc and the user hasn't specified values for RUNSERIAL and RUNPARALLEL then configure chooses `mpirun' from the same directory as `mpicc': RUNSERIAL: /usr/local/mpi/bin/mpirun -np 1 RUNPARALLEL: /usr/local/mpi/bin/mpirun -np $${NPROCS:=2} The `$${NPROCS:=2}' will be substituted with the value of the NPROCS environment variable at the time `make check' is run (or the value 2). ./testpar/Makefile.in Saying `make check' (or `make test') will run the tests on two processors by default. If you define NPROCS then that many processors are used instead: $ NPROCS=4 make check ./configure.in Fixed (hopefully) bugs with detecting whether __attribute__ and __FUNCTION__ are special keywords for the compiler. ./Makefile.in Saying `make install' from the top level directory shows instructions for using shared libraries. ./config/commence.in ./src/Makefile.in ./test/Makefile.in ./testpar/Makefile.in ./tools/Makefile.in Moved the @top_srcdir@ into the makefiles because it was expanded too early and had the wrong value. ./INSTALL Added a warning that if the wrong version of hdf4 tools are installed then `make check' will fail in the tools directory.
* [svn-r1114] Purpose:Paul Harten1999-03-031-1/+1
| | | | | | | | | | | | | | | | | Bug fix Problem: On Solaris2.5, once the library has been compilied with any type of optimization, a bus error comes up in the "dtypes" test. Solution: The problem appears to be in the compilers' version of memcpy() that is used when optimized. Apparently, the same optimization problem is not associated with the similar function memmove(). So, as a solution to this problem, memmove() is substituted in for memcpy(). Platform tested: Solaris2.5
* [svn-r1113] SnapshotRobb Matzke1999-03-022-2/+2
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* [svn-r1112] Changes since 19990301Robb Matzke1999-03-0229-849/+5946
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL Reorganized and added some additional examples. ./MANIFEST ./aclocal.m4 [NEW] ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./bin/ltconfig [NEW] ./bin/ltmain.sh [NEW] Added tests to determine how to compile shared libraries and how to link programs with them before the libraries are installed. Also how to install and uninstall shared libraries. The configure step also prints the names of the config files it's trying to load for easier debugging. ./bin/config.guess ./bin/config.sub Replaced with a newer version from GNU. The changes we made to that file to report `irix6.x' and `FreeBSD' without version numbers have been incorporated into configure.in instead. In the future, do not change these two files (see the top of configure.in instead). By the way, this update was required to get shared libraries working. ./config/linux [REMOVED] ./config/linux-gnulibc1 [NEW] ./config/linux-gnu [NEW] ./config/alpha-dec [REMOVED] ./config/alpha-dec-osf4.0 [REMOVED] ./config/dec-osf4.x [NEW] ./config/irix5.3 [REMOVED] ./config/irix5.x [NEW] ./config/irix64 [REMOVED] ./config/freebsd Moved config files around to agree with output from the new config.guess. The linux file was split into gnu (RedHat), gnulibc1, and gnulibc2 versions. The alpha-dec file was removed (I think it was unused) and the alpha-dec-osf4.0 was changed to dec-osf4.x. The irix5.3 file renamed to irix5.x and the irix64 file was renamed to irix6.x. The freebsd file was changed to point to linux-gnulibc1. These changes were tested on: Linux 2.0 Linux 2.1 FreeBSD 3.2 Irix 5.3 Irix64 6.2 Irix64 6.4 HP/UX 10.20 OSF1 4.0 ./config/alphaev56-dec-osf4.x ./config/irix64 Added warnings similar to linux/freebsd about using compilers with known bugs. ./config/commence.in ./config/conclude.in ./src/Makefile.in ./test/Makefile.in ./testpar/Makefile.in ./tools/Makefile.in Added definitions for shared libraries. This has been tested on the following systems: Linux 2.0 Linux 2.1 FreeBSD 3.2 Irix 5.3 Irix64 6.2 Irix64 6.4 HP/UX 10.20 static only OSF1 4.0 If you want to disable use of shared libraries (you probably do for development purposes since it takes a lot longer to compile and because you have to run dynamically linked programs in a special way if the library hasn't been installed) then add `--disable-shared' to the configure command line. This is all documented in the INSTALL file. ./bin/release Temprarily commented out the MANIFEST checking when running under svf since svf is about to be replaced by a newer version. This change only affects error checking during the release process. ./Makefile.dist ./Makefile.in Added `make check' which does the same thing as `make _test' since the former is endorsed by the GNU coding style and people are used to it. The old `make _test' still works too (and so does `make test' if you use GNU make).
* [svn-r1111] SnapshotRobb Matzke1999-03-022-2/+2
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* [svn-r1110] Changes since 19990226Robb Matzke1999-03-0111-224/+293
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL Added instructions for using other compilers on Irix platforms. ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./src/H5private.h The presence of <sys/sysinfo.h> and <sys/proc.h> is only checked on DEC/Alpha because there are too many problems including these headers on other systems. ./config/irix6.x ./config/irix64 Removed `-ansi' and added a comment. Converting an ASCII UTC date and time to a time_t value is not defined by ANSI or Posix but is available if we don't use `-ansi'. This allows the dataset modification time messages to be read properly by H5Gget_objinfo(). ./src/H5Tconv.c Fixed a compiler warning. ./test/dtypes.c ./test/hyperslab.c ./test/istore.c Fixed compiler warnings in printf() statements.
* [svn-r1109] SnapshotRobb Matzke1999-02-262-2/+2
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* [svn-r1108] Changes since 19990225Robb Matzke1999-02-2616-1127/+1298
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL Added warnings and a disclaimer about GNU, DEC, Irix64, and NT compilers that generate incorrect machine code. ./configure.in ./src/H5private.h Detects and includes <sys/param.h> which is needed on FreeBSD before <sys/proc.h> even though we only really using anything from <sys/proc.h> on the DEC Alpha. ./config/irix64 Turned off warnings for duplicate definitions from the linker because -lnsl on irix has the same stuff in it as -lc. ./config/irix6.x Split up the CC and CFLAGS settings like with irix64 so that compilers besides `-n32' can be used. ./bin/snapshot The snapshots are tagged with names like hdf5-1_1_52 which is similar to the way the releases are tagged (cvs doesn't allow dots in tags). ./test/dtypes.c ./src/H5private.h ./src/H5Tconv.c Fixed some alignment violations on the DEC when using high optimization levels. The DEC incorrectly optimizes certain memcpy() and memmove() calls when the source argument is not word aligned if the call looks like it's copying an atomic data type. ./test/hyperslab Worked around code generation bugs in the Irix64 Mongoose 7.00 compiler by casting some `unsigned long' values to `unsigned' in an expression. ./src/H5Ocomp.c Fixed a place where %d was used to print a size_t.
* [svn-r1107] SnapshotRobb Matzke1999-02-262-2/+2
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* [svn-r1106] Cleaned up a few compiler warnings, etc.Quincey Koziol1999-02-253-7/+7
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* [svn-r1105] Removed flag which was stopping the HDF4 library from being ↵Quincey Koziol1999-02-251-1/+1
| | | | | | tested, now that I've rolled back the installed library on hawkwind to HDF4.1r2.
* [svn-r1104] Corrected a typo in the "ld warning suppress" which has a peculiarAlbert Cheng1999-02-251-1/+2
| | | | syntax.
* [svn-r1103] Purpose:Paul Harten1999-02-251-0/+1
| | | | | | | | | | | | | | | | | | | | | Bug fix Problem: This bug is coming up as a bus error on some machines (fuga, spank) in the "fillval" test. At higher levels of optimizations, H5detect gets rid of a statement which is to be used in alignment tests. Because of this, SIGBUS is never delivered, and the alignment constraints of the machine are not recorded correctly by H5detect in H5Tinit.c. Solution: By preventing the optimizer from getting rid of the statement to be used in the alignment tests, SIGBUS is delivered as expected, and the alignment constraints of the machine are recorded correctly. Platform tested: Irix6.5(fuga), HPUX10.20(spank), Solaris2.5(Kryten)
* [svn-r1102] SnapshotRobb Matzke1999-02-252-2/+2
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* [svn-r1101] Changes since 19990219Robb Matzke1999-02-2529-585/+650
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/irix64 The old (-32) compiler is now supported by setting envrionment CC='cc -32'. The -64 compiler is the default or you can set CC='cc -64'. ./src/H5A.c ./src/H5D.c ./src/H5F.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5G.c ./src/H5I.c ./src/H5Ocomp.c ./src/H5P.c ./src/H5R.c ./src/H5RA.c ./src/H5T.c ./src/H5Tbit.c ./src/H5Tconv.c ./src/H5Z.c ./src/H5detect.c ./test/big.c ./test/cmpd_dset.c ./test/dsets.c ./test/dtypes.c ./test/enum.c ./test/mtime.c ./test/ohdr.c ./tools/h5ls.c Fixed lots of warnings on Irix64. Mailed a few remaining warnings in H5S to Quincey and a few in the dumper to Ruey-Hsia.
* [svn-r1100] SnapshotRobb Matzke1999-02-252-2/+2
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