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* [svn-r5936] Pedro Vicente Nunes2002-09-212-7/+21
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Purpose: bug fix [ i s this a bug fix? feature? ...] Description: the copy of a symbol table entry was done with a shallow copy, in H5T_copy this was causing an exception on the free call of the ID to name buffer replaced a shallow copy of a symbo l a edescribe the bug, or describe the new feature, etc] Solution: [details about the changes, algorithm, etc...] [Please as detail as you can since your own explanation is better than others guessing it from the code.] Platforms tested: windows 2000 solaris with cpp, fortran irix64, with fortran, parallel i r [machines you have tested the changed version. This is absolute important. Test it out on at least two or three different platforms such as Big-endian-32bit (SUN/IRIX), little-endian-32(LINUX) and 64-bit (IRIX64/UNICOS/DEC-ALPHA) would be good.]
* [svn-r5935] Elena Pourmal2002-09-211-201/+201
| | | | | | | | | | | | Purpose: Bug fix Description: _DLL_ macro was not replaced by H5_DLL macro in the Fortran stabs header file when it was replaced in the C header files. Solution: Replace it. Platforms tested: Tested on Solairs 2.7 with --enable-fortran --enable-cxx flags.
* [svn-r5933] MuQun Yang2002-09-201-0/+0
| | | | | | | | | | Purpose: change the setting of HDF5DLL Description: To insert the "correct" zlib path for the project file HDF5DLL Solution: Platforms tested: win2000
* [svn-r5932] MuQun Yang2002-09-2026-37/+37
| | | | | | | | | Purpose: use H5_DLLCPP to replacer __DLLCPP__ for c++ interfaces. Description: Solution: Platforms tested: linux 2.2.18smp, IRIX64, solaris 2.7, windows 2000
* [svn-r5931] MuQun Yang2002-09-2051-1045/+1045
| | | | | | | | | | | | Purpose: __DLL__ is a keyword in some platforms and __DLL__ is also defined as a macro for windows DLL applications. That causes problems. Description: Solution: Use H5_DLL*** to replace __DLL***__ at all header files. Change the macro defination at H5api_adpt.h. Platforms tested: linux2.2.18smp, irix64, solaris 2.7 and windows 2000
* [svn-r5929] Pedro Vicente Nunes2002-09-188-69/+328
| | | | | | | | | | | | | | Purpose: bug fix Description: memory leak regarding the ID to name buffer Solution: added a new function H5G_free_ent_name that is called on several places of the library Platforms tested: windows 2000 linux, with cpp solaris, with fortran, cpp irix64, with parallel, fortran
* [svn-r5927] Snapshot version 1.5 release 36HDF Admin2002-09-1410-36/+39
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* [svn-r5926] Purpose:Quincey Koziol2002-09-1312-113/+118
| | | | | | | | | | | | | API name change Description: Change all "space time" references to "alloc time", including API functions and macro definitions, etc. Platforms tested: FreeBSD 4.6 (sleipnir) w/C++ Solaris 2.7 (arabica) w/FORTRAN IRIX64 6.5 (modi4) w/parallel & FORTRAN
* [svn-r5925] Purpose:Quincey Koziol2002-09-132-4/+60
| | | | | | | | | | | | Code cleanup Description: Eliminate memory leak of compact storage raw data buffer found by purify. Platforms tested: FreeBSD 4.6 (sleipnir) w/C++ Solaris 2.7 (arabica) w/C++ IRIX64 6.5 (modi4) w/parallel & FORTRAN
* [svn-r5924] Purpose:Quincey Koziol2002-09-131-2/+2
| | | | | | | | | | | | | Code cleanup Description: Switch order of test on array bounds to avoid reading data outside of array Located by purify. Platforms tested: FreeBSD 4.6 (sleipnir) w/C++ Solaris 2.7 (arabica) w/C++ IRIX64 6.5 (modi4) w/parallel & fortran
* [svn-r5921] Purpose:Quincey Koziol2002-09-112-7/+7
| | | | | | | | | | | | | | | | | Code cleanup Description: Two of the parameters to H5S_select_hyperslab are defined as "const hsize_t foo[]", and then "foo" is assigned another value, which is technically against the C standard and is now causing problems for a user with a more strict compiler. Solution: Changed "const hsize_t foo[]" to "const hsize_t *foo". Platforms tested: FreeBSD 4.6 (sleipnir) - not a significant enough change to worry about multi-platform testing.
* [svn-r5919] Purpose:Quincey Koziol2002-09-111-32/+11
| | | | | | | | | | | | Cleanup Description: Cleanup gcc cases to be more general about gcc 3.x, now that gcc 3.2 has been released. Platforms tested: FreeBSD 4.6 (sleipnir) - not a significant enough change to worry about multi-platform testing.
* [svn-r5918] Purpose:Quincey Koziol2002-09-111-1/+1
| | | | | | | | | | | | Bug fix. Description/Solution: Fix bug in log file driver where the size of the buffer for recording the log information was being set incorrectly. Platforms tested: FreeBSD 4.6 (sleipnir) - no additional testing on other machines neceessary, due to scope of fix.
* [svn-r5917] Description:Albert Cheng2002-09-101-2/+2
| | | | Make it the same as v1.4 by adding year 2002.
* [svn-r5916] Purpose:Bill Wendling2002-09-093-3/+97
| | | | | | | | | | | | Bug Fix Description: Sometimes, we needed to pick up a header file in the current build directory. Solution: Added a test to see if the compiler can handle the "-I." option so that it will get that header file. Platforms tested: Modi4
* [svn-r5913] Purpose:Bill Wendling2002-09-092-4/+4
| | | | | | | | | | | | | Bug Fix Description: We were getting the wrong MPIRUN program when you used the full pathname. The "case" statement was checking the "F9X" macro, but it really only needed the basename of the F9X macro. Solution: Put wildcard matching in so that it would find the appropriate basename. Platforms tested: Modi4
* [svn-r5912] Snapshot version 1.5 release 35HDF Admin2002-09-0710-35/+35
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* [svn-r5911] Pedro Vicente Nunes2002-09-043-8/+52
| | | | | | | | | | | | | Purpose: bug fix in 'ID to name' function Description: the function replace_name was only checking for immutable datatypes Solution: added a new function H5T_is_named, that checks for named datatypes Platforms tested: windows 2000, linux, solaris with Fortran
* [svn-r5910] Purpose:Bill Wendling2002-09-031-5/+5
| | | | | | | | | | Bug Fix Description: Some macros had "NULL" instead of "FAIL" as the return value. Solution: Change from NULL to FAIL. Platforms tested: Eirene (C++), Arabica (Fortran), Modi4 (pp and Fortran).
* [svn-r5908] Snapshot version 1.5 release 34HDF Admin2002-08-3110-35/+48
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* [svn-r5907] Pedro Vicente Nunes2002-08-301-5/+34
| | | | | | | | | | | | | | | | | | | | | | | | Purpose: bug turnaround in test_hdf5_fortran on a h5fmount_c call Description: the H5I_nmembers(H5I_GROUP) call that is made inside h5fmount_c -> H5G_replace_name -> H5I_nmembers(H5I_GROUP) is not detecteting correctly that the entry belongs to the group list therefore a call is made to H5I_search(H5I_DATATYPE) (there are always non-named datatypes) and H5G_replace_ent is called with a search for the datatype group ent = H5T_entof((H5T_t*)obj_ptr); which returns a NULL ent a tweak for this is to add if( !ent) goto done; Platforms tested: windows 2000, Linux, Solaris with fortran
* [svn-r5905] Purpose:Albert Cheng2002-08-281-3/+2
| | | | | | | | | | | | | | Bug fix Description: script did not work for SP system. Solution: added "eval" command to launch the mpi execution. This works fine for SP and is basically a no-op for non-batch systems like workstations. Also got rid of the wrongle implemented TESTING message since the result was not printed and the tests output mess up the format already. Platforms tested: SP (snow). Did not test more since it has been tested out fine in the v1.4 checkin.
* [svn-r5904] Pedro Vicente Nunes2002-08-2814-71/+2766
| | | | | | | | | | | | | | | | | | | Purpose: Added 'ID to name' support Description: There is a new API function H5Iget_name Most of the changes are on H5G.c , regarding the symbol table entry struct H5G_entry_t which has 2 new fields 'name' and 'old_name' A new private function was introduced H5G_ent_copy, that does a deep copy between 2 symbol table entries The test file is getname.c Platforms tested: windows 2000, Linux, Solaris
* [svn-r5903] MuQun Yang2002-08-271-0/+0
| | | | | | | | | Purpose: update windows project files for fortran, fix bugs, including new files etc. Description: Solution: Platforms tested: windows 2000
* [svn-r5900] Purpose:Quincey Koziol2002-08-272-11/+117
| | | | | | | | | | | Code cleanup/New Feature Description: Improve the space allocation in the file by re-using freed space more effectively. Platforms tested: FreeBSD 4.6 (sleipnir) w/serial & parallel
* [svn-r5899] Purpose:Quincey Koziol2002-08-271-0/+6
| | | | | | | Update release notes Description: Mention new space allocation features.
* [svn-r5898] Purpose:Quincey Koziol2002-08-271-1/+11
| | | | | | | | | | | Additional test Description: Add in a fill-value to one of the tests, to make certain that they are handled correctly. Platforms tested: FreeBSD 4.6 (sleipnir) w/serial & parallel
* [svn-r5897] Purpose:Bill Wendling2002-08-271-35/+52
| | | | | | Cleaned up the documentation Description: There were some small errors in the documentation in the source file.
* [svn-r5896] Purpose:Quincey Koziol2002-08-274-3/+4
| | | | | | | | | | | Code cleanup Description: Cleaned up some compiler warnings. Platforms tested: FreeBSD 4.6 (sleipnir) w/serial & parallel. Will be testing on IRIX64 6.5 (modi4) in serial & parallel shortly.
* [svn-r5895] Purpose:Quincey Koziol2002-08-277-27/+170
| | | | | | | | | | | | Code cleanup/More tests Description: Cleaned up some compiler warnings and wrote additional tests for space allocation and storage size routines. Platforms tested: FreeBSD 4.6 (sleipnir) w/serial & parallel. Will be testing on IRIX64 6.5 (modi4) in serial & parallel shortly.
* [svn-r5894] Purpose:Quincey Koziol2002-08-2720-410/+857
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix/Code cleanup/New Feature Description: Correct problems with writing fill-values to external storage and allocate the data storage at the correct times. Also, mostly straighten out the strange code which allocates and fills raw data storage for datasets. Things are still a bit odd in that the fill-values for chunked datasets are written when the space is allocated, instead of in a separate routine, but there are two reasons for this: it's inefficient (especially in parallel) to iterate through all the chunks twice, and (more importantly) the space needed to store compressed chunks isn't known until we've got a buffer of compressed fill-values ready to write to the chunk. Additionally, add in the H5D_SPACE_ALLOC_INCR and H5D_SPACE_ALLOC_DEFAULT setting for the "space time", which incorporate the previous behavior of the space allocation for chunked datasets. The default settings for the different types of dataset storage are now as follows: Contiguous - Late Chunked - Incremental Compact - Early This checkin also incorporates a change to the behavior of external data storage in two ways - fill-values are _never_ written to external storage (under the assumption that writing fill-values is triggered by allocating space in an HDF5 file, and since space is not allocated in the file, the fill-values should not be written) and external data files are now created if they don't exist when data is written to them. The fill-value will probably need to be revisited at some time in the future, this just seemed like the safer course currently. I think I cleaned up some compiler errors also, before getting bogged down in the fixes for the space allocation and fill-values. Platforms tested: FreeBSD 4.6 (sleipnir) w/serial & parallel. Will be testing on IRIX64 6.5 (modi4) in serial & parallel shortly.
* [svn-r5893] Raymond Lu2002-08-261-0/+9
| | | | | | | | | | Purpose: bug fix Description: The H5Dget_storage_size test doesn't handle the situation when no compression is configured. Platforms tested: IRIX 6.5
* [svn-r5890] Purpose:Bill Wendling2002-08-231-2/+2
| | | | | | | | | | Bug Fix Description: Some more naming mistakes. Solution: Stopped calling it ds_start and calling the structure its real name. Platforms tested: NERSC
* [svn-r5889] Purpose:Bill Wendling2002-08-231-9/+9
| | | | | | | | Bug Fix Description: Structure elements in the GPFS code weren't named correctly. Solution: Changed the names to the correct values.
* [svn-r5888] MuQun Yang2002-08-231-0/+0
| | | | | | | | | | Purpose: Update windows including zlib macro updating, new source adding and some source code tuning. Description: Need to update fortran case later. Solution: Platforms tested: windows 2000
* [svn-r5887] Purpose:Quincey Koziol2002-08-231-3/+10
| | | | | | | | | | | Regression test for bug fix Description: Adjust selection so chunked data needs to be read from pre-allocated chunks w/filters, to verify that filter is applied correctly. Platforms tested: FreeBSD 4.6 (sleipnir) w/parallel
* [svn-r5886] Purpose:Quincey Koziol2002-08-232-0/+28
| | | | | | | | | | | | | | Bug fix Description: Correctly apply filters (like compression) to fill values in chunks that are pre-allocated. This is OK in parallel also, since all the chunks are identical at this point and any chunk may be written by any process. Platforms tested: FreeBSD 4.6 (sleipnir) w/parallel
* [svn-r5884] Purpose:Quincey Koziol2002-08-211-48/+53
| | | | | | | | | | | | Bug fix/Code cleanup Description: Clean up memory leak in fill value code Also rearrange logic of code a bit Platforms tested: FreeBSD 4.6 (sleipnir)
* [svn-r5883] Raymond Lu2002-08-202-60/+60
| | | | | | | | | | Purpose: Rename variables. Description: In this file, dataset address offset is misnamed as file offset. Changed them back to dset_offset_XXX or dset_offset. Platforms tested: eirene
* [svn-r5882] Raymond Lu2002-08-201-74/+72
| | | | | | | | | | Purpose: Bug fix. Description: In H5D_init_storage, contiguous dataset is not initialized properly when fill value is library default. Platforms tested: eirene
* [svn-r5881] Purpose:Albert Cheng2002-08-201-1/+3
| | | | | | | | | | | | | | | bug fix Description: Last change of FUNC_ENTER to FUNC_ENTER_NOAPI did not include definition of variable ret_value and label done. Solution: Added the missing ret_value and label done. Not sure if the logic is correct since the function will abort if some assert fails. This fix only takes care of the syntax error. Platforms tested: eirene(pp). Did not test on other machine since the syntax fix is pretty simple.
* [svn-r5880] Raymond Lu2002-08-201-0/+5
| | | | | Purpose: add information of compact dataset.
* [svn-r5879] Raymond Lu2002-08-2021-299/+1128
| | | | | | | | | Purpose: Design for compact dataset Description: Compact dataset is stored in the header message for dataset layout. Platforms tested: arabica, eirene.
* [svn-r5878] Purpose:Albert Cheng2002-08-192-41/+73
| | | | | | | | | | | | fix/feature Description: v1.4's configure had enable-trace default as on. That is not right for production code as it increase the object code and uses up compute time. Changed --enable-trace default to depend on --enable-debug. If debug is on, trace is on. Otherwise it is off. Also added the printing of CFLAGS, CPPFLAGS, and LDFLAGS in the summary. Platforms tested: eirene, arabica (pp).
* [svn-r5876] Change the wording of the message from "current directory" toAlbert Cheng2002-08-171-2/+2
| | | | | | "current setting". latforms tested: Modi4
* [svn-r5875] Purpose:Quincey Koziol2002-08-146-69/+442
| | | | | | | | | | | | | | Additional regression tests & bug fixes Description: There was no testing for the H5Dget_storage_size function and it seemed to be having problems with compressed, chunked datasets, so write some tests to verify that its working correctly. Also, fix case for allocating storage early for chunked datasets Platforms tested: FreeBSD 4.6 (sleipnir) serial & parallel
* [svn-r5872] Purpose:Quincey Koziol2002-08-127-3679/+3826
| | | | | | | | | | | | Code cleanup Description: Move get/set routines for each type of property list (file creation, dataset creation, file access and dataset transfer) into their own source code module. Platforms tested: FreeBSD 4.6 (sleipnir)
* [svn-r5871] Purpose:Quincey Koziol2002-08-1222-371/+183
| | | | | | | | | | | | | | | | Code cleanup Description: Combined H5P_isa_class and H5I_object functionality into a new internal H5P API function: H5P_object_verify, which checks that a property list is the appropriate class and then returns the property list object associated with the property list ID. This reduces the source code by about 200 LOC and trims the library binary some more. Platforms tested: FreeBSD 4.6 (sleipnir)
* [svn-r5869] Snapshot version 1.5 release 33HDF Admin2002-08-1010-35/+55
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* [svn-r5868] Purpose:Quincey Koziol2002-08-092-9/+9
| | | | | | | | | | Code cleanup Description: Cleanup up a few compiler warnings... Platforms tested: IRIX64 6.5 (modi4) w/parallel
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