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* [svn-r922] Using CLOCK structure for timings as opposed to doubles for ↵Dan Wells1998-11-182-59/+72
| | | | better accuracy.
* [svn-r921] changed the comment for the extra cast to say the correct verison ↵Patrick Lu1998-11-173-9/+9
| | | | of the compiler 0.0->5.0
* [svn-r920] changed the GROUP macro to be GROUPNAME since GROUP was used by ↵Patrick Lu1998-11-172-3/+3
| | | | | | the winsock2.h file
* [svn-r919] added a check to see if we need to or a _O_BINARY flag to the ↵Patrick Lu1998-11-171-0/+6
| | | | | | flag list for the open function
* [svn-r918] updated the location to put H5config.h and H5Tinit.c.Patrick Lu1998-11-171-0/+0
| | | | also updated the proj file for the library.
* [svn-r917] The name was wrong in the FUNC_ENTER macro of one of the entries.Dan Wells1998-11-161-1/+1
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* [svn-r916] Problem:Albert Cheng1998-11-161-1/+7
| | | | | | | | | | | | | In machine (e.g. O2K) where long long and long are the same sizes, it ended up defining GB8LL as 1 which is way too small for the dataset size. Solution: Add an entry to define GB8LL if long can hold it. When all fails, define GB8LL as 0. During runtime, enough_room() will detect this special value and skips the test. Platform tested: O2K IRIX64.
* [svn-r915] Changed typo `cc' to `gcc'Robb Matzke1998-11-161-2/+2
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* [svn-r914] Changes since 19981113Robb Matzke1998-11-169-312/+2046
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/conclude.in ./test/Makefile.in ./tools/Makefile.in The Makefile $TESTS variable has finally been split into $TEST_PROGS and $TEST_SCRIPTS with the latter being the names of shell scripts that need to be run with `/bin/sh'. Now we don't have to copy each shell script before we run it. NOTE: THIS CHANGE DOES NOT AFFECT THE PABLO MAKEFILE SINCE THAT FILE IS A COPY OF A PREVIOUSLY GENERATED MAKEFILE. ./src/Makefile.in Added H5Snone.c to the source list. ./src/H5G.c Plugged a memory leak by emptying the object type "isa" table when the library is closed. ./src/H5Tconv.c ./src/H5Tpkg.h Added 48 new type functions to take advantage of hardware for integer type conversions. These functions are not registered in the conversion table yet because I haven't fully tested them. ./src/H5Tpkg.h Removed __unused__ qualifiers from prototypes.
* [svn-r913] Added $(LDFLAGS) to the make command for H5detect.Albert Cheng1998-11-161-1/+1
| | | | Tested on O2K in both parallel and serial modes.
* [svn-r912] Added H5Snone.cQuincey Koziol1998-11-131-1/+1
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* [svn-r909] Dummied out make of progs and test to avoid rebuild of the library.Dan Wells1998-11-131-33/+9
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* [svn-r908] Fixed a bug in the I/O totals computation.Dan Wells1998-11-131-21/+30
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* [svn-r907] Changes since 19981111Robb Matzke1998-11-1327-858/+1668
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL Added instructions about specifying a path for GNU zlib and HDF4 headers and library. Added comments for each of the tool names. Added h5toh4 as a tool name. ./configure.in ./conigure [REGENERATED] ./src/H5config.h.in [REGENERATED] The config/* scripts get invoked with $CC_BASENAME set the base name of the compiler in order to make it easier to handle setting compiler flags for different compilers in a big case statement. For instance, if $CC has the value /usr/local/mpi/bin/mpicc -ansi -64 then $CC_BASENAME will be `mpicc'. The $CC_BASENAME is not set if $CC is not set. Fixed alignment in `configure --help'. An include and/or library path can be specified for GNU zlib if configure can't find it in normal places. The "normal" means wherever your compiler normally searches, including search paths you've added through environment variables like CPPFLAGS and LDFLAGS. The INSTALL file has instructions. The `-ljpeg' library is detected. If `ssize_t' is not found then a #define is added to H5config.h similar to what we already do for `size_t'. We detect the hdf5 header file `mfhdf.h' and libraries `-lmfhdf' and `-ldf' and if found define the H5TOH4 and TESTH5TOH4 Makefile variables. The user can specify an include and/or library path. The INSTALL file has instructions. The `RUNTEST' variable has been split into `RUNSERIAL' and `RUNPARALLEL' because these are different commands. The makefile still uses `RUNTEST', which defaults to the RUNSERIAL value. The new testpar/Makefile.in sets RUNTEST to the RUNPARALLEL value. The default RUNSERIAL value is empty and the default RUNPARALLEL value is `mpirun -np 2'. These can both be overridden in the config/* files. To make the value the empty string set it like `RUNPARALLEL=none' in the config/* file. The new testpar/Makefile is generated from testpar/Makefile.in ./config/commence.in Added the RUNSERIAL and RUNPARALLEL makefile definitions. ./src/Makefile.in The `H5detect' program is run with RUNSERIAL, which is empty on all platforms except intel-osf1 (ASCI/Red) ./config/conclude.in Removed the `.c.a:' implicit rule -- we don't use it any more. ./config/BlankForm ./config/alpha-dec ./config/alpha-dec-osf4.0 ./config/freebsd2.2.7 ./config/hpux10.20 ./config/hpux9.03 ./config/intel-osf1 ./config/irix5.3 ./config/irix6.2 ./config/irix64 ./config/linux ./config/powerpc-ibm-aix4.2.1.0 ./config/rs6000-ibm-aix4.1.4.0 ./config/solaris2.5 All of these files have been updated to hande multiple compilers. Most of them assume `cc' if CC is not set. The documentation in `BlankForm' has been updated and documentation in the other files refer to `BlankForm'. The intel-osf1 uses LDFLAGS instead of LIBS to specify the extra library search paths. ./examples/Makefile.in ./test/Makefile.in ./tools/Makefile.in Simplified by grouping some dependency information together more succinctly. The tools Makefile.in has been modified to work with the `h5toh4' and `testh5toh4' programs. Until Paul checks these in you may have problems compiling. If so, just create files h5toh4.c and testh5toh4.c that contain: #include <stdio.h> int main(int argc, char *argv[]) { fprintf(stderr, "%s: not implemented\n", argv[0]); return 1; } ./src/H5public.h Removed definition for `ssize_t' since this is now handled by configure in H5config.h with a #define. ./MANIFEST ./testpar/Makefile.in [NEW] Added a makefile for parallel tests. As soon as we get this working properly we can remove the other four makefiles in that directory and maintain just one.
* [svn-r906] SnapshotRobb Matzke1998-11-132-2/+2
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* [svn-r905] Added test for writing dataset region references.Quincey Koziol1998-11-131-1/+185
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* [svn-r904] Fixed bug in H5dont_atexit.Quincey Koziol1998-11-1312-10/+568
| | | | | | | Plugged a memory leak in the union of hyperslabs code. Checkpointing dataset region references, which are working, but not stored in file yet.
* [svn-r903] Switched default compiler to be native compiler instead of gccQuincey Koziol1998-11-131-2/+2
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* [svn-r902] Added H5Snone.cQuincey Koziol1998-11-131-0/+1
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* [svn-r901] SnapshotRobb Matzke1998-11-122-2/+2
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* [svn-r900] Changes since 19981106Robb Matzke1998-11-1111-98/+138
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./tools/h5ls.c The chunk dimensions and total size is printed for chunked datasets. ./examples/h5_attribute.c ./examples/h5_select.c ./test/chunk.c ./test/iopipe.c ./test/ragged.c ./src/H5.c ./src/H5private.h ./src/H5public.h Removed extra carriage-return characters inserted by a broken OS :-) Reformatted strange-looking comments. Removed C++ comments. Wrapped long lines. ./examples/h5_attribute.c ./examples/h5_select.c Removed inclusion of private headers. Changed `uint32' (originally `uint') to `unsigned' because `int32' is not exported as part of the API. ./src/H5Fmpio.h Removed includes for <sys/types.h> and <sys/stat.h> since they're already included by H5private.h. All system include files should be included in H5private.h so we can wrap them with appropriate feature macros. ./tools/h5import.c ./tools/h5repart.c Included header files like all other programs in that directory. ./tools/h5tools.c Better type checking for `hsize_t' and `hssize_t'.
* [svn-r899] SnapshotRobb Matzke1998-11-112-2/+2
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* [svn-r898] added an include for H5private.h and changed a uint to an uint32Patrick Lu1998-11-101-3/+3
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* [svn-r897] added a #ifdef HAVE_UNISTD_H around the unistd.h includePatrick Lu1998-11-102-2/+4
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* [svn-r896] replaced the macroname for FILE to be FILENAMEPatrick Lu1998-11-101-13/+13
| | | | this was causeing a problem because FILE is deifned in a header that was included
* [svn-r895] added some extra casts because windows was having trouble ↵Patrick Lu1998-11-103-9/+57
| | | | | | converting to a double from an unsigned int 64
* [svn-r894] included H5private.h and changed uint to uint32Patrick Lu1998-11-101-1/+2
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* [svn-r893] changed a uint to a uint32 and included H5private.h in the file.Patrick Lu1998-11-101-1/+2
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* [svn-r892] had to change teh name of the hyper union member to be hslabPatrick Lu1998-11-103-92/+92
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* [svn-r891] commented out the include for winsock.h. only need the winsock2.hPatrick Lu1998-11-101-1/+1
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* [svn-r890] changed the name of the union member hyper to be hslab.Patrick Lu1998-11-101-1/+1
| | | | caused a conflict on winNT because hyper is a keyword
* [svn-r889] added a typedef for the ssize_t to be signed intPatrick Lu1998-11-101-0/+1
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* [svn-r888] i added a #ifdef HAVE_GETTIMEOFDAY around the gettimeofday ↵Patrick Lu1998-11-101-1/+2
| | | | function call
* [svn-r887] SnapshotRobb Matzke1998-11-102-2/+2
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* [svn-r886] Fixed H5dont_atexit in development branch also.Quincey Koziol1998-11-091-0/+6
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* [svn-r884] SnapshotRobb Matzke1998-11-072-2/+2
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* [svn-r883] Modified to cause creation of pablo/MakefileDan Wells1998-11-062-3/+3
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* [svn-r882] Made modifications to support MPIO Pablo real-time tracing.Dan Wells1998-11-062-6/+3
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* [svn-r881] Updates to support MPIO real-time tracingDan Wells1998-11-062-25/+731
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* [svn-r880] Made some changes for 64 bit file IDsDan Wells1998-11-061-2/+2
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* [svn-r879] Changes since 19981105Robb Matzke1998-11-069-131/+1298
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./configure.in ./acconfig.h ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] Added checks for functions, structs, constants, and header files used in h5ls.c to determine the output width with various Windows compilers and Unix variants. Added check for <sys/stat.h> and defined HAVE_SYS_STAT_H. Included <sys/stat.h> in H5private.h outside the Posix.1 #include's section. ./src/H5RA.c Less aggressive about failing -- rather returns false, which allows type detection to continue. ./src/h5ls.c Data types are displayed for datasets and named data types when `-v' or `--verbose' is specified on the command-line. The algorithm is a little different than the dumper because we're trying to be human-friendly, not necessarily machine-friendly. * Any data type which matches a native C type gets printed something like `native double'. * A floating point type that matches one of the IEEE standard types but not one of the native types gets printed like `IEEE 64-bit big-endian float'. * Other floating point values have information about sign bit location; exponent size, location, and bias; and significand size, location, and normalization. * Padding and offsets are displayed for types that have padding (precision != size), including internal padding for some floating point data types. * Non-native integer types are displayed like `32-bit little-endian unsigned integer'. * Compound data types have each member displayed including the member name, byte offset within the struct, dimensions, index permutation, and data type. * String types are displayed like `256-byte null-terminated ASCII string'. * References are displayed like `8-byte unknown reference' until the reference interface stabilizes a little. * All other types including types not yet defined will be printed like `4-byte class-9 unknown'. The dimensionality of scalar datasets is printed like `{SCALAR}' instead of just `{}'. If external raw files are used to store a dataset then the offsets, sizes, and file names of each are printed if `-v' or `--verbose' was given on the command-line. If an object is found and h5ls can't determine the object type then it still tries to print the number of hard links, the OID, and any comment that might be present if `-v' or `--verbose' was specified. If the `-d' or `--dump' switch is turned on then ragged arrays will report that the data can only be dumped by dumping the component datasets explicitly. I'm not planning to implement this since we're going to eventually change the whole way ragged arrays are stored. Compound data values do not have the component names displayed by default when `-v' or `--verbose' is turned on. Instead, the names can be displayed with `-l' or `--label'. The output width is determined by the first rule that applies: * If the `-wN', `-w N' or `--width=N' switch appeared on the command line then use N for the output width. * Query the OS for the tty width in a highly unportable way borrowed from GNU `less' depending on what functions and data structures were found during configuration (if any): _getvideoconfig(), gettextinfo(), _srcsize(), ioctl(), GetConsoleScreenBufferInfo(), struct videoconfig, struct text_info, the TIOCGWINSZ ioctl, the TIOCGETD ioctl. * If the `COLUMNS' environment variable is set then use its value. * Use the value 80. Just for kicks, run Mark and Jim's test_vbt and then say `h5ls -dlsv test.vbt'. You can also try it on the various *.h5 files in the test/example directories. ./config/linux Removed turning on parallel by default on Robb's macine.
* [svn-r876] Changes since 19981102Robb Matzke1998-11-0517-63/+498
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./bin/snapshot Made same fix as for the release script yesterday. ./src/H5D.c ./src/H5Dprivate.h ./src/H5G.c ./src/H5Gprivate.h ./src/H5Gpublic.h ./src/H5O.c ./src/H5Oprivate.h ./src/H5RA.c ./src/H5RAprivate.h ./src/H5T.c ./src/H5Tprivate.h Improved object type checking. Instead of determining the object type by trying to open each of the possible types, we keep a table of associations between object type number (like H5G_GROUP, H5G_DATASET, H5D_TYPE, and H5D_RAGGED) and an `isa' function that returns true if the object header has the right messages to make the object a particular type. This mechanism also allows specialization of object types by permitting an object to satisfy more than one `isa' function. Added `isa' functions for groups, datasets, ragged arrays, and committed data types. ./src/H5config.h.in Added HAVE_STAT_ST_BLOCKS. I thought this had already been added, but apparently not. ./tools/h5ls.c Removed system include files since they're already included by H5private.h and since I wasn't including them portably anyway. By default, 1-byte integer types are printed as integer values instead of ASCII characters. However, the `-s' or `--string' command-line switch causes the data to be interpretted as ASCII. String data types are always printed as character data. Ragged arrays are now identified as ragged arrays and h5ls doesn't descend into the group automatically. This uses the new object type specialization stuff. ./tools/h5tools.c ./tools/h5tools.h Added the ability to print 1-byte integer types as either ASCII or numeric data instead of always ASCII. The default is to print as numeric data.
* [svn-r875] SnapshotRobb Matzke1998-11-052-2/+2
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* [svn-r874] merged bug fix from hdf5-1_0 branchRobb Matzke1998-11-051-1/+1
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* [svn-r867] SnapshotRobb Matzke1998-11-042-2/+2
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* [svn-r866] Modified for parallel configuration.Dan Wells1998-11-031-1/+9
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* [svn-r865] Modifications required for 64 bit longs.Dan Wells1998-11-033-33/+30
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* [svn-r864] SnapshotRobb Matzke1998-11-032-2/+2
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* [svn-r861] Set RUNTEST to /bin/sh because the test is actually a shell ↵Albert Cheng1998-11-021-0/+2
| | | | | | script file. Updated development version too.
* [svn-r859] Changes since 19981030Robb Matzke1998-11-0244-738/+923
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./MANIFEST Added new Pablo files HDF5record_RT.h and ProcIDs.h ./acconfig.h ./configure [REGENERATED] ./configure.in ./src/H5.c ./src/H5Vprivate.h ./src/H5config.h.in [REGENERATED] ./src/H5private.h ./src/H5public.h ./test/big.c Added more configuration stuff for the Win32 environment. Removed all the #ifdef WIN32 from the source and replaced them with OS-independent stuff. Specifics follow: Check for non-Posix.1 `st_blocks' field in `struct stat' which is used by the big file test to decide if the file system supports holes. If the st_blocks field isn't present then we just skip the test. Configure checks for <io.h> <sys/resource.h> <sys/time.h> and <winsock.h> and defines HAVE_IO_H, HAVE_SYS_RESOURCE_H, HAVE_SYS_TIME_H and HAVE_WINSOCK_H when they're found. Configure checks whether both <sys/time.h> and <time.h> can be included and defines SYS_TIME_WITH_TIME if so. Otherwise include only <sys/time.h> or <time.h> even if both exist. Configure checks sizeof(__int64) and defines SIZEOF___INT64 to the result or to zero if __int64 isn't defined. The source uses `long long' in preference to `__int64'. Removed null WIN32 definition for `inline' since such a definition already exists in H5config.h Protected gettimeofday() calls in debugging code with HAVE_GETTIMEOFDAY instead of WIN32. ./src/H5F.c ./src/H5Flow.c ./src/H5Fmpio.c ./src/H5Fsec2.c ./src/H5Fstdio.h ./src/H5P.c ./src/H5Tconv.c ./src/H5private.h Removed #include of system files from library source files and consolodated them into H5private.h where they're protected by various configuration macros (most of them were duplicated there already anyway). ./test/big.c ./test/chunk.c ./test/cmpd_dset.c ./test/dsets.c ./test/dtypes.c ./test/extend.c ./test/external.c ./test/fillval.c ./test/flush1.c ./test/flush2.c ./test/iopipe.c ./test/links.c ./test/mount.c ./test/mtime.c ./test/overhead.c ./test/ragged.c ./test/shtype.c ./test/unlink.c Protected system #include's with #ifdef's from H5config.h. Undefined NDEBUG since some of the tests rely on assert() to check return values. Removed WIN32 definitions for __unused__ since this can be controlled by the definition of HAVE_ATTRIBUTE in H5config.h ./test/testhdf5.h Removed the CLEAN_CMD definition because we no longer use it. Albert's cleanup() functions replaced it. ./test/fillval.c Initialized auto hid_t variables to fix warnings in error recovery code when data flow analysis is turned on in compilers. ./test/h5tools.c Initialized an auto variable to fix a compiler warning. ./test/chunk.c ./test/ragged.c The WIN32 had some unsigned variables changed to signed because the compiler generates warnings when coercing unsigned to double(?). I changed them back to unsigned because they really are unsigned quantities. If this the change was just to shut up extraneous warnings then perhaps a compiler flag can do the same; otherwise if the compiler generates bad code then we should supply a patch file instead messing up source code with bug work-arounds. ./src/H5detect.c Protected system #include's with #ifdef's from H5config.h thereby removing a WIN32. If getpwuid() doesn't exist (HAVE_GETPWUID) then we assume that `struct passwd' doesn't exist either (we don't really need it in that case). The H5T_NATIVE_LLONG and H5T_NATIVE_ULLONG are defined in terms of `long long' or else `__int64' or else `long' depending on what's available. ./src/H5Flow.c ./src/H5Ofill.c Added __unused__ to some function arguments that aren't used when assertions are turned off. ./src/H5V.c Changed an auto variable name in some hand-inlined code to get rid of a warning about the variable shadowing a previous auto.
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