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* [svn-r2587] Purpose:Quincey Koziol2000-09-223-4/+69
| | | | | | | | | | | | | | | | | | | Bug fix (sorta) Description: When the stride and block size of a hyperslab selection are equal, the blocks that are selected are contiguous in the dataset. Prior to my hyperslab optimizations, this situation used to be detected and somewhat optimized to improve performance. I've added more code to optimize for this situation and integrated it with the new hyperslab optimization that weren't very efficient for that case as they should have been. Solution: Detect contiguous hyperslab selections (i.e. block size in a dimension is the same as the stride in that dimension) and store the optimized, contiguous version of that hyperslab. We also store the original, un- optimized version of the hyperslab to give back to the user if they query the hyperslab selection they just made. Platforms tested: FreeBSD 4.1
* [svn-r2586] Purpose:Bill Wendling2000-09-221-1/+1
| | | | | | | | | | | | | Bug Fix Description: The prototype for the H5Pregister function has a variable named `class'. This is a reserved word in C++ and causes the C++ compiler to freak. Solution: This variable's name was changed to cls_id in the .c file, so I changed it in the header file to cls_id to match. Platforms tested: Linux
* [svn-r2585] Mentioned the new Stream Virtual File Driver.Thomas Radke2000-09-221-1/+7
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* [svn-r2583] Purpose:Quincey Koziol2000-09-201-0/+13
| | | | | | | | | | | | | Bug Fix. Description: An assertion in the local heap code was mistakenly checking against too large of a value for the size of new local heap created. When used with larger-sized (>10KB) variable-length objects, it was failing the check. Solution: Corrected to check against the actual size of the heap allocated, without the heap header. Platforms tested: FreeBSD 4.1
* [svn-r2582] Purpose:Bill Wendling2000-09-201-0/+129
| | | | | | | Bug fix Description: Didn't regen the MANIFEST when I added the Fortran library...sorry.
* [svn-r2581] Purpose:Quincey Koziol2000-09-191-33/+23
| | | | | | Clean up compiler warnings. Platforms tested: FreeBSD 4.1
* [svn-r2580] Purpose:Quincey Koziol2000-09-191-333/+1952
| | | | | | | | | | | | Restore file Description: It appears that Robb's checkin earlier today erroneously overwrote this file with an older version... *grumble* Solution: Found another copy of newest version, verified that it is operating correctly and re-checked it in. Platforms tested: FreeBSD 4.1
* [svn-r2579] Purpose:Quincey Koziol2000-09-1911-34/+22
| | | | | | Clean up small compiler warnings and add missing function prototypes. Platforms tested: FreeBSD 4.1
* [svn-r2578] Purpose:Bill Wendling2000-09-191-4284/+0
| | | | libtool shouldn't be included in the CVS tree.
* [svn-r2577] Purpose:Bill Wendling2000-09-192-1/+2
| | | | | | Added support for compiling in subdirectories. Platforms tested: Solaris, IRIX (O2K)
* [svn-r2576] Purpose:Bill Wendling2000-09-19112-0/+41358
| | | | | | | | Adding the Fortran interface to the HDF5 library Description: Fortran is now a subdirectory of the HDF5 library tree. Platforms tested: Solaris and IRIX (O2K)
* [svn-r2574] Purpose:Bill Wendling2000-09-191-6/+6
| | | | | | | | | H5FDstream.h needs to be installed. Description: H5FDstream.h is included in the hdf5.h file and needs to be installed with the other public headers. Solution: Added it to the rest of the install headers.
* [svn-r2573] Purpose:Robb Matzke2000-09-1914-2154/+1718
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Fix Irix pmake bugs Description: Build fails on Irix when builddir != srcdir Solution: * acconfig.h * src/H5config.h.in [REGENERATED] Added definition for HAVE_STREAM * config/conclude.in * config/depend1.in * config/depend2.in * config/depend3.in * config/depend4.in The `Dependencies' file is located in the source tree. This fixes bugs for Irix pmake when compiling outside the source tree. Hopefully it still preserves Albert's changes which allow concurrent compilations to not stomp on each other's Dependencies files. * examples/Dependencies [REGENERATED] * src/Dependencies [REGENERATED] * test/Dependencies [REGENERATED] * tools/Dependencies [REGENERATED] Regenerated for testing purposes. Platforms: i686-pc-linux mips-sgi-irix6.5 sparc-sun-solaris2.6
* [svn-r2572] Purpose:Albert Cheng2000-09-191-4/+10
| | | | | | | | | | | | | | | | | | Feature Description: Most tests are done inside a for-loop. Whenever a test exits with error, the for-loop does a "exit 1" to exit the make. "make -i" could not catch and ignore the error status. Solution: Replaced "exit 1" with break. At the end of the for-loop, test if all tests have been run. If not, the for-loop is ended by the break command, thus raise an error. Now, 'make -i' can catch and ignor it. Also added the test of variable HDF5_Make_Ignore inside the for-loop to indicate the desire to ignore errors when the HDF5_Make_Ignore is set to a non-null/blank string. Platforms: Tested on modi4 and eirene.
* [svn-r2569] Purpose:Bill Wendling2000-09-182-360/+389
| | | | | | | | | | | | | | I introduced a small bug when trying to fix the zlib stuff. Description: -lz wouldn't be specified with the compile flags if it was found while checking for the HDF4 library. Solution: Removed my bad check and replaced with a better one. Platforms: Linux, Solaris
* [svn-r2568] Description:Quincey Koziol2000-09-161-2/+1
| | | | Mention the hypeslab speedups
* [svn-r2567] Description:Quincey Koziol2000-09-161-0/+3
| | | | Added Stream VFD modules to the MANIFEST
* [svn-r2565] Purpose:Bill Wendling2000-09-152-23/+24
| | | | | | | | Stupid error in one of the tests. Description: The string tested needed to be in quotes. Platforms: Linux, Solaris
* [svn-r2564] Purpose:Bill Wendling2000-09-151-591/+829
| | | | | | | Regenerated after changes to the configure.in file made by Thomas Radke <tradke@aei-potsdam.mpg.de> Platforms: Linux
* [svn-r2563] Purpose:Thomas Radke2000-09-151-0/+10
| | | | | | | | | | | | | | | | | Added the Stream Virtual File Driver to the list of drivers used for trying to open a file via h5dump_fopen(). Description: The Stream VFD was added at bottom of the driver list for h5dump_fopen(). If no driver succeeded to open a file given by its filename the Stream VFD would try to do so by parsing the filename as an 'hostname:port' argument, open a socket to that address and read read the file. This feature can be used to h5ls/h5dump streamed files. Platforms: All platforms (also between heterogenous).
* [svn-r2562] Purpose:Thomas Radke2000-09-151-0/+379
| | | | | | | | | | | | | | | | | | | | | | | | | | | Added test program to verify the Stream Virtual File Driver. Description: This program tests the functionality of the Stream Virtual File Driver. 1. It spawns two new processes, a sender and a receiver. 2. The sender opens an HDF5 file for writing and writes a sample dataset to it. On closing the file the Stream VFD would send the file contents to any connected client. 3. The receiver serves as a client attempting to open an HDF5 file for reading. On opening the file the Stream VFD would establish a socket connection to the sender process, identified by its hostname (which is localhost in this example) and a port number, and read the file contents via this socket. Aftwerwards the dataset is read from the file into memory and verified. 4. The main program waits for termination of its two child processes and returns their exit code. Platforms: Tested so far under Linux, Irix 32/64bit, OSF1, Solaris, Cray Unicos, Hitachi SR8000, IBM AIX. Not tested under Windows yet.
* [svn-r2561] Purpose:Thomas Radke2000-09-151-2/+5
| | | | | | | Add the Stream VFD test program to the 'make check' targets. Description: Added stream_test to the TEST_PROGS variable and a rule to build it.
* [svn-r2560] Purpose:Thomas Radke2000-09-151-0/+1
| | | | | | | Include the Stream VFD's header file H5FDstream.h. Description: All the VFD's header files are included by hdf5.h itself for convenience.
* [svn-r2559] Purpose:Thomas Radke2000-09-151-8/+8
| | | | | | | | Add the Stream VFD sources to the appropriate makefile variables. Description: Added H5FDstream.c to the LIB_SRC variable and H5FDstream.h to the PUB_HDR variable for building the Stream VFD.
* [svn-r2558] Purpose:Thomas Radke2000-09-151-0/+3
| | | | | | | | | | Define HAVE_STREAM. Description: If the Stream VFD was configured the configured script will expand this into '#define HAVE_STREAM 1' in H5config.h and '#define H5_STREAM 1' in H5pubconf.h.
* [svn-r2557] Purpose:Thomas Radke2000-09-151-0/+7
| | | | | | | Added registration of the Stream Virtual File Driver. Description: The Stream VFD is registered here if it was configured.
* [svn-r2556] Purpose:Thomas Radke2000-09-151-0/+1
| | | | | | | | | | | Added the H5FD_stream_fapl_t type to the TypeString mapping table. Description: This servers for proper substitution of the H5TRACE macros in the Stream VFD sources. Platforms: All platforms.
* [svn-r2555] Purpose:Thomas Radke2000-09-152-0/+1037
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Added source files for the Stream Virtual File Driver. Description: The Stream VFD allows users to stream complete HDF5 files via socket connections between different applications. Files which were created anew are flushed to any connected client on each H5Fflush() or H5Fclose() operation. Files which are opened as read-only will be read from a socket on a H5Fopen() call. The driver's H5FDset_fapl_stream() routine allows to pass in several parameters such as an external socket descriptor, some socket options, and flags for broadcasting a received file. If an external socket is provided the Stream VFD would use that for the socket calls. Otherwise it parses the filename argument in H5Fcreate()/H5Fopen() for a 'hostname::port' parameter. All files processed by the Stream VFD are kept in memory (same way as the core VFD does). Platforms: Tested so far under Linux, Irix 32/64bit, OSF1, Solaris, Cray Unicos, Hitachi SR8000, IBM AIX. Not tested under Windows yet.
* [svn-r2554] Purpose:Thomas Radke2000-09-151-0/+1
| | | | | | | | | | Add the socket library to make's LIBS variable. Description: The socket library is needed to build HDF5 with the Stream VFD. Platforms: Solaris
* [svn-r2553] Purpose:Thomas Radke2000-09-151-0/+18
| | | | | | | | | | | | Added new option --with-Stream-VFD. Description: The configure option --with-Stream-VFD[={yes}|{no}] is used to configure HDF5 to build the Stream Virtual File Driver. The default is not to build it. Platforms: all platforms
* [svn-r2552] Purpose:Bill Wendling2000-09-141-74/+249
| | | | | | | | | | Upgrade of GNU tools. Description: Upgraded the aclocal.m4 to the newest version of libtool.m4. Platforms: Linux.
* [svn-r2551] Purpose:Quincey Koziol2000-09-141-76/+180
| | | | | | | | | | | | | | | | Fix last couple of errors from introducing "regular" hyperslab feature into the library. Description: Code was blindly dereferencing data structures which aren't defined when operating on regular hyperslabs. Solution: Check for regular hyperslab defined and retrieve information from regular hyperslab info instead of mucking about in other hyperslab information. Platforms: Solaris 2.6
* [svn-r2550] Purpose:Bill Wendling2000-09-142-1813/+1752
| | | | | | | | | | | | | | | | | | Cleaned up the configure file a bit. Description: There were a few small bugs having to do with checking if strings were empty. Also needed to force paths to be absolute instead of relative. Solution: I standardized string checking (test -z for an empty string and test -n for a non-empty string). Also, if the user specifies a relative path for any of the options, the configure now makes it into an absolute path for both CPPFLAGS and LDFLAGS macros. Platforms: Solaris, Linux
* [svn-r2549] Added usage message if the user doesn't specify a filename (i.e., noBill Wendling2000-09-141-1/+6
| | | | command line arguments are given).
* [svn-r2548] Added #include <sys/resource.h> for the struct getrusage ↵Bill Wendling2000-09-141-24/+28
| | | | | | | declaration. Przemek Klosowski, Ph.D. <przemek@nist.gov> reported this problem on Linux RH 6.1 systems.
* [svn-r2547] Changed hyperslab definition to generate one 6x6 hyperslab ↵Quincey Koziol2000-09-131-2/+2
| | | | | | instead of 36 1x1 hyperslabs.
* [svn-r2546] Further patches to accomodate regular hyperslabs. More of the ↵Quincey Koziol2000-09-132-50/+201
| | | | | | tests are passing, but not all of them yet...
* [svn-r2545] Updated some printfs to be more informative when failures occur.Quincey Koziol2000-09-131-9/+9
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* [svn-r2544] Optimized regular hyperslab I/O routines and data structures. ↵Quincey Koziol2000-09-132-312/+1886
| | | | | | | | | | | | | On my benchmarks, they are about 4-5 times faster than before. We no longer generate "general" hyperslab data structures for regular hyperslabs, the general data structures are only generated when needed for irregular hyperslabs. Still fixing a couple of nook-and-cranny functions to understand the new information for the regular hyperslabs, so the tests aren't completely passing, but I wanted to get this checked in for Elena's benchmarks. I should have more/all tests passing later today.
* [svn-r2542] index.html: Minor edits.Frank Baker2000-09-131-2/+2
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* [svn-r2539] Removed the -R$(ZLIB_DIR) flag since that is now being taken ↵Bill Wendling2000-09-121-37/+35
| | | | | | care of much more nicely in the config/commence file...
* [svn-r2538] Added DYNAMIC_DIRS macro. This is derived from the LDFLAGS macro ↵Bill Wendling2000-09-121-1/+2
| | | | | | | | created in the configure script, basically replacing all -L/<path> constructs with -R/<path> ones so that libtools will pass it along to the compiler correctly.
* [svn-r2537] I take the LDFLAGS macro, scan it for -L/<path> statements and ↵Bill Wendling2000-09-122-322/+349
| | | | | | | | add the equivalent -R/<path> to the LT_LINK_EXE command. Therefore, any executables created will know where we got the different libraries from automagically.
* [svn-r2533] Rolled back the changes I committed since Albert fixed the ↵Bill Wendling2000-09-1112-48/+0
| | | | | | problem with FILENAME being extern global...
* [svn-r2532] Added a trivial FILENAME definition to those programs linked withBill Wendling2000-09-1112-0/+48
| | | | h5test.o, which requires the definition to work...
* [svn-r2531] Description:Albert Cheng2000-09-1032-85/+34
| | | | | | | | | | | | | | | | | | | The "FILENAME" declared extern in h5test.h is not always used. It was used in h5_cleanup to remove temporary files created during tests. Not all tests codes have used this routine. Indeed, quite a few of test programs do "#define FILENAME ". Also, h5_cleanup needs to work in tandem with h5_fixname. h5_fixname accepts an explicite base_name argument instead of using the global variable FILENAME. That is cleaner. Solution: Added char *base_name[] as a new argument to h5_cleanup, in the same style as h5_fixname. Removed "extern char *FILENAME..." from use. Also, undo some unnecessary declaration of "char *FILENAME" from some tests which don't use it at all (yet). Platforms tested: modi4-64(irix64), arabica(solari2.7), eirene(linux) (arabica could not launch tests automatically. I had to hack in LD_LIBRARY_PATH to make them run.)
* [svn-r2529] Added a -R<directory> flag to the LT command line. If we compile ↵Bill Wendling2000-09-081-36/+37
| | | | | | | | | | | | | with zlib, and zlib isn't in our LD_LIBRARY_PATH or in a standard system library place (/usr/lib or /lib), then the tests can't run. This fixes it if the person configures the source with the flag: --with-zlib=/usr/fnord/include,/usr/fnord/lib This only works if you're pointing to the shared library version in the above flag...
* [svn-r2528] Linking errors occured with these files. They link with ↵Bill Wendling2000-09-0812-1/+48
| | | | | | | libh5test, but libh5test wants FILENAME to be defined. I have no clue why this was working before...
* [svn-r2527] Added ability for user to compile executables as all-static...Bill Wendling2000-09-081-1/+2
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* [svn-r2526] Added the ability to compile executables things as completely ↵Bill Wendling2000-09-082-544/+601
| | | | | | static. Also I'm keeping the place the user indicated the zlib would be...
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