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* [svn-r16908] v1.6.9 released.hdf5-1_6_9Albert Cheng2009-05-016-95/+106
| | | | Commit all changes made by bin/release.
* [svn-r16907] One cosmetic edit to remove parentheses from the initials so ↵Albert Cheng2009-05-011-2/+2
| | | | | | that they are consistent.
* [svn-r16901] Description:Frank Baker2009-04-301-10/+11
| | | | | H5Rget_region: Post-review edits related to fix for Bugzilla 1477. Tested: Firefox
* [svn-r16900] Set version information to 1.6.9 to be ready for release.Albert Cheng2009-04-308-36/+36
| | | | Tested: h5committested (linew is still in progress.)
* [svn-r16899] Update platforms tested and Supported Features Summary tables.Larry Knox2009-04-301-43/+51
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* [svn-r16898] Description:Frank Baker2009-04-301-1/+17
| | | | | | Added '-n, --NaN' option. Added explanatory performance-related notes to "h5diff and NaNs" discussion.
* [svn-r16896] Update the changes document with the API compatibility macros ↵Neil Fortner2009-04-291-47/+137
| | | | | | | | introduced in 1.6.8, as well as the new macro in 1.6.9. Tested: Firefox, Konqueror
* [svn-r16895] Description:Frank Baker2009-04-291-32/+21
| | | | Formatting pass.
* [svn-r16892] Description:Frank Baker2009-04-291-1/+1
| | | | Update "Last modified" tag to most recent substantive revision.
* [svn-r16886] Update to include modification to the parallel tests.Christian Chilan2009-04-291-1/+11
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* [svn-r16882] Description:Frank Baker2009-04-2829-65/+65
| | | | | Update footers and release tags. Tested: Firefox
* [svn-r16879] Description:Frank Baker2009-04-281-39/+57
| | | | | | | H5Rget_region: Changed 'dataset' parameter to 'loc_id' as it can be any object in the subject file. -- Fixes Bugzilla entry 1477. Tested: Firefox
* [svn-r16868] Description:Binh-Minh Ribler2009-04-281-1/+3
| | | | Noted that bugzilla 1045 is fixed.
* [svn-r16867] Maintenance: Updated file in preparationfor the HDF5 1.6.9 release.Elena Pourmal2009-04-281-17/+19
| | | | Updated system information for Mac Intel.
* [svn-r16861] Description:Frank Baker2009-04-2513-13/+137
| | | | | Added "Include special topics files" and "Include function files" internal headers.
* [svn-r16860] Description:Frank Baker2009-04-251-2/+147
| | | | | First draft of "1.6.9 Changes" section. Tested: Firefox
* [svn-r16856] Updated the version to 1.6.9Allen Byrne2009-04-241-4/+4
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* [svn-r16854] Maintenance: Changed version to hdf5-1.6.9-pre2 for further ↵Elena Pourmal2009-04-249-37/+37
| | | | check-ins.
* [svn-r16852] Maintenance: Changed version number to 1.6.9-pre1 and created a ↵Elena Pourmal2009-04-2410-40/+47
| | | | | | tar ball for remote testing.
* [svn-r16840] Bug fix:Albert Cheng2009-04-223-6/+6
| | | | | | | | | | | | | If the AR command has embedded shell separators such as the case of "AR = ar -X 64", $AR ends up as a blank. Solution: Put quotes around the command substitution string to protect against embedded separators. Applied the same to both AR and RANLIB assignments. Tested: At Up (AIX 5.3) only because that was where I discovered the error when AR is ar -X 64
* [svn-r16834] Description:Frank Baker2009-04-221-7/+13
| | | | | | Updated and restructured "Copyright Notice & License Terms" document per new standard. Added 2009 to copyright date range. Tested: Firefox
* [svn-r16828] Description:Frank Baker2009-04-211-7/+11
| | | | | Updated and restructured "Copyright Notice & License Terms" document per new standard.
* [svn-r16821] Description:Binh-Minh Ribler2009-04-211-2/+12
| | | | | | | | | | | | | Added member function Attribute::getInMemDataSize() to simplify getting the attribute's data size in memory. Used this new function in Attribute::read to get the fixed-len string attribute data. Added to tests in tattr.cpp. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r16820] Description:Binh-Minh Ribler2009-04-212-12/+70
| | | | | | | | | | | Added member function Attribute::getInMemDataSize() to simplify getting the attribute's data size in memory. Used this new function in Attribute::read to get the fixed-len string attribute data. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r16812] Description:Frank Baker2009-04-201-19/+26
| | | | | | | Corrected description of return value. -- Closes Bugzilla entry 1494. Minor edits, added "Last modified" tag, and updated HTML. Tested: Firefox
* [svn-r16809] Purpose: Add version macroNeil Fortner2009-04-203-1/+19
| | | | | | | | Description: Versioning was just added to H5Z_class_t in 1.8. Therefore, I am adding a H5Z_class1_t macro to 1.6 to enable backwards compatibility using H5Z_class1_t. Tested: jam (simple change)
* [svn-r16795] Description:Binh-Minh Ribler2009-04-201-3/+0
| | | | | | | | | | | | Enabled dsets test again because no more failure on liberty. When I checked about the failure before, it seemed to have something to do with using cerr/cout. At that time, the failure disappeared when all cerrs/couts were removed. Probably, it was some temporary system problem. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty)
* [svn-r16794] Description:Binh-Minh Ribler2009-04-201-9/+69
| | | | | | | | | | | | Fixed to pass parameters to H5Awrite/H5Aread correctly so that all Attribute::write and Attribute::read methods work correctly for both fixed-length and variable-length string attributes. Added more test cases. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty)
* [svn-r16791] Description:Binh-Minh Ribler2009-04-201-38/+82
| | | | | | | | | | | | Fixed to pass parameters to H5Awrite/H5Aread correctly so that all Attribute::write and Attribute::read methods work correctly for both fixed-length and variable-length string attributes. Added more test cases. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty)
* [svn-r16784] Adapted parallel tests to run with arbitrary number of processors.Christian Chilan2009-04-175-166/+178
| | | | Tested on jam and abe.
* [svn-r16769] Corrected include of h5tool.h in h5difftst.Allen Byrne2009-04-161-0/+0
| | | | Tested: XP32 VS6
* [svn-r16763] Description:Frank Baker2009-04-153-62/+115
| | | | | | | | | Added "Note:" documenting that raw dataset caching is not supported with MPIO and MPI POSIX drivers in read/write mode, as discussed in Bugzilla entry 1344. -- Closes documentation aspect of Bugzilla entry 1344. Minor edits, added "Last modified" tag, and updated HTML. Tested: Firefox
* [svn-r16762] New feature (Bug ID: 1345):Albert Cheng2009-04-152-1/+21
| | | | | | | | | | | Added a Make target of check-all-install to test the correctness of installing via the prefix= or $DESTDIR options. Platforms tested: jam by hand. The test failed because installing by $DESTDIR is actually not working! I go on with the commit because I am sure the tests are correct. Will fix DESTDIR problem.
* [svn-r16748] Description:Frank Baker2009-04-141-28/+45
| | | | | | | | | | | Added note that unlimited dimensions require chunking. -- Closes Bugzilla entry 1489. Removed '-1' value accompanying H5S_UNLIMITED; such values, assigned by the library to a constant, should not be considered public as they may change without notice. Added "Last modified" tag and "See Also" section. Edited for clarity, other minor edits, updated HTML coding. Tested: Firefox
* [svn-r16739] Snapshot version 1.6 release 8 (post13)Larry Knox2009-04-1210-38/+41
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* [svn-r16737] Pedro Vicente Nunes2009-04-101-0/+3
| | | | | | - h5diff new flag, -c, --compare, list objects that are not comparable. PVN - 2009/4/10 - 1368 - h5diff new flag, -N, --nan, avoids NaNs detection. PVN - 2009/4/10
* [svn-r16724] Description:Frank Baker2009-04-091-13/+23
| | | | | | | Corrected spelling error. -- Closes Bugzilla entry 1541. Updated HTML coding and added "Last modified" tag. Tested: Firefox
* [svn-r16715] Snapshot version 1.6 release 8 (post12)Larry Knox2009-04-0910-37/+38
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* [svn-r16684] Description:Frank Baker2009-04-071-7/+25
| | | | | | | Added note that a scalar dataspace rank is always 0. -- Fixes Bugzilla entry 1075. Added "Last modified" tag and cleaned up HTML. Tested: Firefox
* [svn-r16681] Description:Scot Breitenfeld2009-04-0713-829/+829
| | | | | | | | | Fixed warnings from absoft's compiler for !DEC$ statements. Solution: There should not be a space after !DEC$ statements, removed the spaces. Platforms tested: Jam with gcc and f95
* [svn-r16675] Description:Frank Baker2009-04-061-19/+32
| | | | | | | | Corrected selection type H5S_SEL_ALL. -- Fixes Bugzilla entry 1446. Added "See Also" section and "Last modified" tag. Cleaned up other text and HTML. Tested: Firefox
* [svn-r16674] #1105 (B1) The v16 default api in HDF5 1.8.0 has problems ↵Pedro Vicente Nunes2009-04-068-12/+50
| | | | | | | | | | | w/High Level library. ISSUE: the header files changed names between 1.6 and 1.8, and that may cause issues for a 1.6 app using the 1.8 library. SOLUTION: Added a conditional #if def to detect 1.6 library version number and use the 1.6 headers or else use the 1.8 headers. DOCS AND TEST: Nothing added STATUS: Closed bug tested: linux
* [svn-r16667] Corrected the urls for h5dump xml dtd and schemaAllen Byrne2009-04-0356-58/+59
| | | | Tested: Fedora 10 gcc
* [svn-r16660] Bug 1529.Albert Cheng2009-04-036-452/+3
| | | | | | | | | | | | | | | | Description: The MPE option is not working with the new mpich2. hdf5 configure is looking for the routine CLOG_Init() in the library liblmpe.a. The old mpich has that routine but the new mpich2 does not have it. I could not find any reference or document of what the CLOG_Init() is or why it is needed. The only log message for adding the requirement for liblmpe.a was for the NCSA old AIX platform that has retired and could not be used to verify the correctness. Solution: Remove the requirement of liblmpe.a. Tested: Just parallel with fortran on kagiso, jam and smirom.
* [svn-r16651] Snapshot version 1.6 release 8 (post11)Larry Knox2009-04-0110-40/+44
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* [svn-r16648] fix typoPedro Vicente Nunes2009-04-011-1/+1
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* [svn-r16645] add a mention to #1501Pedro Vicente Nunes2009-04-011-2/+6
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* [svn-r16642] #1501 (B1) tools bug if dataset is larger than H5TOOLS_BUFSIZE ↵Pedro Vicente Nunes2009-04-0112-3608/+3763
| | | | | | | | | | | | | | limit. ISSUE : the tools use the following formula to read by hyperslabs: hyperslab_size[i] = MIN( dim_size[i], H5TOOLS_BUFSIZE / datum_size) where H5TOOLS_BUFSIZE is a constant defined of 1024K. This is OK as long as the datum_size does not exceed 1024K, otherwise we have a hyperslab size of 0 (since 1024K/(greater than 1024K) = 0). This affects h5dump. h5repack, h5diff SOLUTION: add a check for a 0 size and define as 1 if so. TEST FOR H5DUMP: Defined a case in the h5dump test generator program of such a type (an array type of doubles with a large array dimension, that was the case the user reported). Since the written file commited in svn would be around 1024K, opted for not writing the data (the part of the code where the hyperslab is defined is executed, since h5dump always reads the files). Defined a macro WRITE_ARRAY to enable such writing if needed. Added a run on the h5dump shell script. Added 2 new files to svn: tools/testfiles/tarray8.ddl, tools/testfiles/tarray8.h5. NOTE: while doing this I thought of adding this dataset case to an existing file, but that would add the large array output to those files (the ddls). The issue is that the file list is increasing. TEST FOR H5DIFF: for h5diff the check for reading by hyperslabs is H5TOOLS_MALLOCSIZE (128 * H5TOOLS_BUFSIZE) or 128 Mb. This makes it not possible to add such a file to svn, so used the same method as h5dump (only write the dataset if WRITE_ARRAY is defined). As opposed to h5dump, the hyperslab code is NOT executed when the dataset is empty (dataset is not read). Added the new dataset to existing files and shell run (tools/h5diff/testfiles/h5diff_dset1.h5 and tools/h5diff/testfiles/h5diff_dset2.h5 and output in tools/h5diff/testfiles/h5diff_80.txt). TEST FOR H5REPACK: similar issue as h5diff with the difference that the hyperslab code is run. Added a run to the shell script (with a filter, otherwise the code uses H5Ocopy). FURTHER ISSUES: the type in question ("double") has a different output cross platforms (e.g on liberty some garbage number is printed at some array locations) SOLUTION: defined an "int" type for this test. However the printing of such an array has a bogus output at least in one platform (FreeBsd), so eliminated the test run altogether and filed a bug report on this tested: h5committest
* [svn-r16622] Description:Frank Baker2009-03-261-95/+122
| | | | | | | | | | | H5Pcreate_class: Added create_data, copy_data, and close_data parameters. -- Closes Bugzilla entry 1494. Corrected data parameter IN/OUT status in callback function prototypes. Minor edits for clarity, consistency, and format and added link to list of existing classes in H5Pcreate. Added per-function "Last modified" tag. Tested: Firefox
* [svn-r16610] Modified the test of family driver for forward compatibility. ↵Raymond Lu2009-03-251-0/+22
| | | | | | | | Open the file twice to make sure the superblock isn't corrupted. Tested on jam - simple test.
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