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* [svn-r9881] Purpose:Pedro Vicente Nunes2005-01-285-6/+6
| | | | | | | | | | | | | | | | | changed the name of the hl table files back to H5TB.c and H5TB.h this can be done now because the H5TB.c (threaded binary trees) file was removed from the hdf5 library Description: Solution: Platforms tested: linux Misc. update:
* [svn-r9880] Purpose: bug fixPedro Vicente Nunes2005-01-281-1/+1
| | | | | | | | | | | | | | | Description: the print_paralell h5diff function had a call to vsnprintf. this causes a linking error on Windows Solution: replaced with HDvsnprintf Platforms tested: windows (vs6) linux Misc. update:
* [svn-r9878] Purpose:Quincey Koziol2005-01-281-1/+83
| | | | | | | | | | | New tests Description: Add some tests for H5Fis_hdf5() routine. Platforms tested: FreeBSD 4.10 (sleipnir) Too minor to require h5committest
* [svn-r9877] Purpose:Leon Arber2005-01-275-18/+334
| | | | | | | | | | | | | | | | | Bug fix: Temporary fix for h5repack failures in all parallel builds. Description: The parallel additions to h5diff interfered with h5repack. Solution: Added a second set of "parallel" functions to h5diff.c. h5repack uses the serial versions, whereas h5diff will use the parallel versions. Also, h5diff will now be smart about when to enter parallel mode. If is run with mpirun with more than 1 task, it will enter parallel mode. Otherwise, it will stay in serial mode as before. Platforms tested: heping (serial and parallel) Misc. update:
* [svn-r9876] Purpose:Leon Arber2005-01-271-31/+98
| | | | | | | | | | | | Added ability to select which io performance types to graph Description: Originally, POSIX, MPIO, and PHDF5 were all graphed. Now, any subset of these can be graphed individually via the io_type command-line param. Platforms tested: heping Misc. update:
* [svn-r9874] Purpose: Update for C++ libraryBinh-Minh Ribler2005-01-271-3/+5
| | | | | | Description: Added a note about the temporary workaround of using flag --instantiate=local for pgCC.
* [svn-r9873] Updated with newly added file.Albert Cheng2005-01-261-0/+1
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* [svn-r9872] Purpose:Albert Cheng2005-01-269-2843/+3316
| | | | | | | | | | | | New feature. Description: Added new tool ph5diff. (Code done by Leon Arber.) Code is changed but test is not working yet. For now, it skipped all tests. Platforms tested: Tested in heping, serial and parallel modes.
* [svn-r9871] Purpose:Leon Arber2005-01-261-8/+173
| | | | | | | | | | | | | | | Feature additions: script has support for all sorts of interesting plots. fix axis scaling Description: Added support for 2-d and 3-d plots of the data. Command-line options are also added to customize these plots. Axis tick labels are now much improved and match the data and are logically spaced. Platforms tested: heping (gnuplot must be installed to do the plots) Misc. update:
* [svn-r9869] Purpose:Quincey Koziol2005-01-251-2/+2
| | | | | | | | | | | | | | | Bug fix Description: In an earlier bug-fix, I inadvertently inverted the meaning of the "% utilization" in h5ls. Solution: De-invert it. :-) Platforms tested: FreeBSD 4.10 (sleipnir) Too minor to require h5committest
* [svn-r9868] Purpose:John Mainzer2005-01-241-14/+111
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Reduce the run time of the cache tests. Description: Some of the cache tests run for quite a while, which has been causing problems with our daily build and test. In my last modification to cache.c, I added code to skip these stress tests unless we were building in production mode. Since things go faster in production mode, the extra tests are not a major problem here. However, this means that the stress tests are only run once or twice a week. Solution: To try to deal with this, I modified the four longest tests to throttle depending on whether NDEBUG is defined. When NDEBUG is not defined, runtime for the cache tests should be about 1/5th its regular run time. We will see if this is enough of a reduction to avoid problems. There is some doubt in my mind as to just how much good the throttled tests do, but they should be better than nothing. As mentioned before, the correct solution is to build some proper, random test code. Platforms tested: h5committested production and debug builds on heping. Misc. update:
* [svn-r9867] Purpose:Albert Cheng2005-01-241-2/+2
| | | | | | | | | | | | | | | Bug fixes (provided by Leon Arber). Description: gen_report spewed many messages and could not report speeds that are less than 100MB/s. Solution: Removed -w which prints warning messages. Fixed code to recognize speeds under 100MB/s. Platforms tested: Eirene.
* [svn-r9865] Purpose:Quincey Koziol2005-01-243-9/+21
| | | | | | | | | | | | Bug fix Description: Catch another way that vsnprintf() can fail (this time on the HP) and deal with that. Platforms tested: HP/UX 11.x (kelgia) Doesn't affect other platforms
* [svn-r9864] Purpose:Xuan Bai2005-01-241-0/+0
| | | | | | | | | | | | | | | | | | | | | | | Update. Description: Update hdf5/src/H5Tinit.c as PABLO was removed from the source. Solution: Remove the following codes from H5Tinit.c: #define PABLO_MASK H5T_init_mask Platforms tested: Visual C++ 6.0 on Windows XP/2000. Misc. update: Remove the following empty directories in all.zip: hdf5\src\zlib\ hdf5\src\zlib\dll\ hdf5\test\ragged\ hdf5\test\raggeddll\ These folders were generated by Winzip to save path information for files from recursed folder. We need to manually removed these empty folders.
* [svn-r9862] Purpose:Quincey Koziol2005-01-241-1/+1
| | | | | | | | | | Code cleanup Description: Add new test file to 'distclean' target Platforms tested: None, very minor...
* [svn-r9861] Purpose:Quincey Koziol2005-01-245-3/+222
| | | | | | | | | | | | | | | | | | | | Bug fix Description: Add detect vasprintf() routine and use it instead of vsnprintf() when formatting error descriptions if it's available. Added configure test to detect "broken" vsnprintf() implementations which don't return the correct number of character for strings that are too long to fit into the buffer provided (currently a problem on the SGIs and probably the HP). Re-wrote error formatting code in H5Epush_stack() to handle broken vsnprintf() implementations, etc. Platforms tested: IRIX64 6.5 (modi4) h5committest
* [svn-r9858] Purpose:Quincey Koziol2005-01-221-3/+1
| | | | | | | | | | Code cleanup Description: Clean up a few rements from the Pablo removal Platforms tested: None, very minor
* [svn-r9857] Purpose: MaintenanceElena Pourmal2005-01-22134-7358/+13
| | | | | | | | | | | | | | Description: Removed PABLO from the source Solution: Platforms tested: arabica with 64-bit, copper with parallel, heping with GNU C and C++ and PGI fortran (but I disabled hl, there is some weird problem only on heping: F9XMODFLAG is not propagated to the Makefile files Misc. update:
* [svn-r9855] Purpose:Xiaowen Wu2005-01-211-53/+742
| | | | | | | | | | | | | | | | Adding N-bit testing source code into CVS tree. This is for debugging purpose only. N-bit filter won't be included in the daily test. Description: Integer, Float, Array datatype and Compound datatype tests are included. More comprehensive tests need to be done. Solution: Platforms tested: copper(AIX 5.1) and heping(Linux 2.4). Misc. update:
* [svn-r9854] Purpose:Xiaowen Wu2005-01-211-243/+866
| | | | | | | | | | | | | | | | | | For N-bit filter, Adding parameter mappings from HDF5 compound datatype, array datatype and atomic datatype to cd_values inside HDF5 library. N-bit filter should work with these datatypes(string and variable length datatype haven't been considered) in the near future. Description: This is for debugging purpose, N-bit filter won't be tested in the daily test. Solution: Platforms tested: AIX 5.1 and Linux 2.4. Arabica is too slow. Hopefully shanti can be used soon. Misc. update:
* [svn-r9853] Purpose: Minor Bug fixRaymond Lu2005-01-211-84/+86
| | | | | | | | Description: A very minor bug fix and some minor changes to reduce the warning messages during compiling. Platforms tested: sleipnir and fuss
* [svn-r9850] Purpose:John Mainzer2005-01-2011-333/+3663
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | 1) Provide facilities in cache to allow us to avoid a potential cache consistency bug in the parallel case. 2) Clean up a off by one sanity checking bug. 3) Turn off execution of long running tests in debug mode. Description: 1) In the parallel case, all writes to metadata must be collective, but reads may not be. In pricipal, this allows us to different contents in different caches. This isn't a problem as long as the correct data is always on disk, but unless we can force certain writes immediately, that need not be the case. 2) & 3) should need no further explanation. Solution: 1) Add code allowing us to mark cache entries, and then force these entries to be flushed at a later time. Note that to actually avoid the bug, we will have to modify existing code to use these new features. 2) & 3) should need no further explanation. Platforms tested: heping (serial debug and production) committest (copper, sol, and heping). test failed on heping in the c++ portion of the build, but at Quincey's siggestion, I am proceeding with the checkin. Misc. update:
* [svn-r9849] Purpose: New test and a few bug fixRaymond Lu2005-01-202-6/+181
| | | | | | | | | Description: Test conversion from native integer to derived floating-point type and convert back; test conversion from derived floating-point to derived floating-point types and convert back. Fixed a few minor bugs related to type conversion in the library. Platforms tested: h5committest and fuss
* [svn-r9844] Purpose:Xuan Bai2005-01-201-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix. Description: Function _flushall() is not available on Cygwin. So a Cgywin macro is added so the compiler will not call this function when building HDF5 on Cygwin. Solution: Change the following codes: #ifdef H5_HAVE_SYSTEM #ifdefined WIN32 _flushall(); #else HDsystem ("sync"); HDsystem ("df >/dev/null"); #endif to: #ifdef H5_HAVE_SYSTEM #if defined(WIN32) && ! defined(__CYGWIN__) _flushall(); #else HDsystem ("sync"); HDsystem ("df >/dev/null"); #endif Platforms tested: Cygwin 1.5.11, VC 6.0 on XP. Linux 2.4 (heping) Solaris 2.7 (arabica) Misc. update:
* [svn-r9843] Purpose:Xuan Bai2005-01-201-0/+1
| | | | | | | | | | | | A new configuration file hdf5/config/i686-pc-cygwin is add for HDF5 on Cygwin. So MANIFEST should be updated to include this file. Description: Solution: Platforms tested: Misc. update:
* [svn-r9842] Purpose:Xuan Bai2005-01-201-0/+114
| | | | | | | | | | | | | Add a new configure shell script under /config to support configuration for cygwin. Description: Solution: Platforms tested: cygwin 1.5.11, VS 6.0 on windows xp, Linux 2.4 and sol 2.7. Misc. update:
* [svn-r9841] Purpose: Minor correction in commentsRaymond Lu2005-01-201-4/+4
| | | | Platforms tested: No test needed.
* [svn-r9840] Purpose: Bug fix and new testRaymond Lu2005-01-203-6/+270
| | | | | | | | | | | | | Description: The functions for user-define floating-point type, like H5Tset_fields, H5Tset_offset, H5Tset_precision, H5Tset_size, have some minor bugs. For error checking, the library didn't include offset value somehow. Solution: Corrected those bugs. Platforms tested: h5committest and fuss Misc. update:
* [svn-r9839] Purpose:Quincey Koziol2005-01-192-15/+90
| | | | | | | | | | | Bug fix Description: Don't print very long description, check that it's correct internally. Platforms tested: Linux 2.4 (heping) Solaris 2.7 (arabica)
* [svn-r9838] Purpose:Quincey Koziol2005-01-195-25/+65
| | | | | | | | | | | | | | | | | | Bug fix Description: Correctly retire the H5E_LEN setting, now that the FORTRAN and C++ APIs have been corrected to not use it either. Solution: Pass in the string buffer length for FORTRAN In the C++ API, call H5Eget_msg() in a manner similar to the way H5Fget_name() is called. Platforms tested: Linux 2.4 (heping) w/FORTRAN & C++ Solaris 2.7 (arabica) w/FORTRAN & C++
* [svn-r9837] Purpose:Quincey Koziol2005-01-191-0/+7
| | | | | | | | | | | | | | | Bug fix Description: Calling HDvsnprintf() several times (should be twice) is incorrect without calling va_end() and va_start() again. Solution: Call va_end() and va_start() before calling HDvsnprintf() again. Platforms tested: Linux 2.4/x86_64 (mir) Too minor to require h5committest
* [svn-r9836] Purpose:Quincey Koziol2005-01-191-1/+1
| | | | | | | | | | | | Bug fix Description: Fix detection of C++ compiler version number. Platforms tested: Solaris 2.7 (arabica) w/C++ Solaris 2.8 (sol) w/C++ Does not require h5committest
* [svn-r9835] Purpose: Bug fix/enhancementElena Pourmal2005-01-194-1/+4
| | | | | | | | | | | | | | | Description: Fortran module search directories included ../src and ../../fortran/src directories; this was defined in acsite.m4 file in order for fortran and HL fortran tests to compile. Those flags were included in h5fc and h5pfc scripts. Solution: Removed those directories from acsite.m4 file and updated Makefile.in files. Platforms tested: sequential on arabica and parallel on copper including HL Fortran Misc. update:
* [svn-r9834] Purpose: Bug fixElena Pourmal2005-01-181-27/+29
| | | | | | | | | | Description: h5c++ couldn't create object files Solution: Brought changes from 1.6 to 1.7 Platforms tested: arabica Misc. update:
* [svn-r9833] Purpose: Bug fixElena Pourmal2005-01-181-32/+37
| | | | | | | | | | Description: h5fc couldn't create object files Solution: Brought fixes from 1.6 to 1.7 Platforms tested: arabica Misc. update:
* [svn-r9830] Purpose:Albert Cheng2005-01-171-0/+3
| | | | | | | | | | | | | | | | | | Bug fix Description: Fortran and C++ API failed to compile because they need to use H5E_LEN which was removed. Solution: Restored the H5E_LEN definition. A permenant solution is still needed. Platforms tested: H5committested. (heping, sol, and copper all compiled fine again but sol had an error in testerror.sh which seemed to be a different problem. Also tested in tg-NSCA.
* [svn-r9829] Purpose: Clean up testsBinh-Minh Ribler2005-01-163-177/+250
| | | | | | | | | | | | | | | | | | | Description: + replaced "goto error" with throw exceptions + properly cleanup dynamically allocated memory in failure cases, for in some cases, the execution continues on after the failures were reported. + added test utility class InvalidActionException for when an action should cause an exception but doesn't. Platforms tested: SunOS 5.7 (arabica) Linux 2.4 (eirene) Note that there was an error due to the missing symbol H5E_LEN. To be able to test my changes, I temporarily replaced H5E_LEN in c++/src with a constant as in the C tests, before the problem can be fixed. This value doesn't effect the C++ tests at all, at this time.
* [svn-r9827] Purpose: Minor correctionRaymond Lu2005-01-141-1/+1
| | | | | | | | Description: There was a #ifdef statement with logical AND in it. Solution: Change it to #if statement. Platforms tested: sleipnir and eirene. Simple change
* [svn-r9826] Purpose: Bug fixRaymond Lu2005-01-144-3/+114
| | | | | | | | | | Description: Intel compiler on Linux has some problem to convert long double to unsigned int correctly. Solution: Detect the problem in configure and define a macro to skip this test if it happens. Platforms tested: eirene and fuss. Simple change.
* [svn-r9825] Purpose:Quincey Koziol2005-01-144-8/+42
| | | | | | | | | | | | Bug fix Description: Fix possible overrun in error description string by allocating large enough string on the fly. Platforms tested: FreeBSD 4.10 (sleipnir) Too minor to require h5committest
* [svn-r9823] Elena Pourmal2005-01-141-3/+7
| | | | | | | | | | | | | | | | Purpose: Bug fix Description: Test reported failure because of the wrong testing condition when szip didn't have encoder Solution: Fixed the code Platforms tested: copper with SZIP not present SZIP encoder/decoder present SZIP decoder present Misc. update:
* [svn-r9819] Purpose: Bug fixRaymond Lu2005-01-134-24/+30
| | | | | | | | | | | | | Description: The fix of the loss problem of the last 2 bytes of mantissa on sleipnir has not been successful. It happens when converting from unsigned long long to long double. The failure has been on and off. Solution: Hard set a macro to disable unsigned long long->long double for FreeBSD until a good solution is found to solve this elusive problem. Platforms tested: sleipnir and fuss. Only sleipnir is concerned. Misc. update:
* [svn-r9817] Purpose:Xuan Bai2005-01-131-0/+0
| | | | | | | | | | | | | | | | | | | | Update H5fortran_types.f90. Description: As Quincey implemented hobj_ref_t for in Fortran APIs, HDF5 Fortran type definitions should be updated to include HADDR_T in H5fortran_types.f90. Solution: Add the following scripts into hdf5/fortran/src/H5fortran_types.f90: INTEGER, PARAMETER :: HADDR_T = SELECTED_INT_KIND(R_LARGE) Platforms tested: Visual Fortran 6.0 on Windows 2000. Visual Fortran 6.6c on Windows XP. (Notes: As HDF5 Fortran is not supported with .NET on my XP machines, so I did not test on .NET. Also, as H5fortran_types.f90 is included in all.zip, it will only be used for HDF5 on Windows. It is not necessary to test it on Unix.) Misc. update:
* [svn-r9816] Purpose:Albert Cheng2005-01-121-48/+48
| | | | | | | | | | | | | | | | | | | | | | | | | | | cleanup warning messages. Description: Compilers complained about local variable shadowed global variables. The global variables d[], m[], nd, na were having the same names as local function arguments. This was a left over when I broke the original one big chunk of code into separated functions to go around the Intel Compiler optimization error. Solution: Appended the global variables with suffix _g, thus d[] => d_g[] m[] => m_g[] nd => nd_g na => na_g This is only an intermediate step. After the changes tested out fine by all machines, need to rename the variables to more meaningful names like dtype_array. Platforms tested: Tested in heping by saving the previous generated H5Tinit.c, regenerated a new H5Tinit.c with the changed code, finally compared the new and old versions were identical.
* [svn-r9814] Purpose: Bug fixRaymond Lu2005-01-121-2/+3
| | | | | | | | | | Description: the last 2 bytes of mantissa can be lost when converting from unsigned long long to long double. In last check-in, a fix was made to ignore that precision loss. But sometimes, the last 2 bytes are rounded up to the 3rd last byte. Solution: Ignore the 3rd last byte, too, when comparing values. Platforms tested: sleipnir - only this system is concerned.
* [svn-r9813] Purpose:Frank Baker2005-01-121-224/+138
| | | | | | | | | | | | | Added H5Pset/get_data_transform These are initial entries; they need technical review. Removed several deprecated functions that have been commented out through several release cycles (H5Pget_deflate and H5Pset/get_compression) and several lines of no-longer-used template code. Minor formatting changes. Platforms tested: Mozilla
* [svn-r9811] Purpose: Bug fixElena Pourmal2005-01-121-0/+1
| | | | | | | | | | | Description: libh5test_fortran.a(la) files were installed by make install Solution: Brought changes back from 1.6 Platforms tested: mir, eirene Misc. update:
* [svn-r9809] Purpose: bug fixRaymond Lu2005-01-113-11/+85
| | | | | | | | | Description: For HP-UX11.00, compiler's casting from 'long double' to most of integers. A macro was hard set in config/hpux11.00 before. Solution: Let configure detect this case and set the macro. Platforms tested: kelgia, fuss, modi4. These systems are mainly concerned.
* [svn-r9808] Purpose:Xuan Bai2005-01-111-0/+0
| | | | | | | | | | | | | | | | | | | | | | Update. Description: Add N-bit filter feature into HDF5 and update hdf5\src\H5pubconf.h. Solution: 1. Add hdf5/src/H5Znbit.c into hdf5 and hdf5dll projects. 2. Add the following scripts into H5pubconf.h /* comment the following line out if you are not using N-bit filter*/ /* #define H5_HAVE_FILTER_NBIT 1*/ If users want to use N-bit filter, remove the comment marks. Platforms tested: Tested without N-bit filter on Visual C++ 6.0 on Windows XP. (Failed building with N-bit filter, I remember that Kent said N-bit filter had not been fully implemented for the time being.) Misc. update:
* [svn-r9807] Purpose: bug fixRaymond Lu2005-01-114-2/+164
| | | | | | | | | | | Description: For FreeBSD (sleipnir), when GNU compilers do conversion from unsigned long long to long double, the last 2 bytes of mantissa are lost. The impact of precision loss isn't significant. Solution: Detect this case on FreeBSD in configure, ignore it in dtypes.c test instead of return failure. Platforms tested: sleipnir, fuss, modi4. These systems are mainly concerned.
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