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* [svn-r5278] Purpose:Albert Cheng2002-04-2813-230/+221
| | | | | | | | | | | | | | | | | | | | | Migrate from configure macros of XYZ_ABC to H5_XYZ_ABC Description: configure generates many macros definitions on the fly and were stored in src/H5config.h which is included by H5public.h. But other software that uses hdf5 may also run their own configure. There can be a clash in macro name space. We decided awhile ago to prepend all generated macros with "H5_" to avoid conflicts. The process has started and this commit completes it (at least attempt to). Solution: Many macros symbols (e.g. SIZEOF_xxx and HAVE_xxx were changed to H5_SIZEOF_xxx and H5_HAVE_xxx). Then H5private.h no longer includes H5config.h. This cuts H5config.h away from HDF5 source code. Pending issues: The module of fortran and pablo are to be resolved in a different commit. Platforms tested: eirene (parallel), arabica (solaris 7 --enable-fortran, --enable-cxx)
* [svn-r5275] Snapshot version 1.5 release 27HDF Admin2002-04-2710-35/+113
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* [svn-r5273] Raymond Lu2002-04-266-47/+500
| | | | | | | | | | | | Purpose: New feature Description: Allow H5Glink and H5Gmove to handle links across different locations. Solution: Added H5Glink2 and H5Gmove2 functions with new parameter of destination location. Platforms tested: Linux 2.2(eirene)
* [svn-r5272] Purpose:Quincey Koziol2002-04-261-10/+10
| | | | | | | | | | | Bug fix Description: Move iterator initialization in H5D_read & H5D_write before any errors can occur. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r5271] Purpose:Quincey Koziol2002-04-263-3/+11
| | | | | | | | | | | | | | | | Bug Fix. Description: When the fill value for a dataset is not set, the size is set to zero, causing problems with filling unused areas in previously defined chunks (i.e. when the dataset shrinks in size) Solution: Use the size of the elements in the dataset directly, instead of relying on the size of the fill value (which must be the same size). Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r5270] Purpose: bug fixBinh-Minh Ribler2002-04-262-0/+6
| | | | | | | | | | Description: The default constructor of H5File was missing. It's now added. Platforms: SunOS 5.7 (arabica) Linux 6.2 (eirene) IRIX 6.5.11 (modi4)
* [svn-r5269] Elena Pourmal2002-04-251-3/+3
| | | | | | | | | | | Purpose: Maintenance Description: Changed code to use H5_HAVE_MPI_MULTI_LANG_* definitions and H5pubconf_fortran.h include file. Solution: Platforms tested: Let's daily tests do this work. I have to leave now.
* [svn-r5268] Purpose:Bill Wendling2002-04-251-0/+3
| | | | | | | | | Update Description: Added h5pubconf_fortran.h as a public header file for the Fortran wrappers... Platforms tested: Linux
* [svn-r5267] Purpose:Bill Wendling2002-04-253-5/+108
| | | | | | | | | | Update Description: Added a conversion of the H5config_fortran.h file to H5pubconf_fortran.h so as to keep with the HDF5 format of using H5_ as a prefix for HAVE_* macros. Platforms tested: Linux
* [svn-r5266] Purpose:Bill Wendling2002-04-257-34/+86
| | | | | | | | | Update Description: Updated the h5vers script to automatically update the configure.in files so that they reflect the correct version in the AC_INIT line. Platforms tested: Linux
* [svn-r5263] Elena Pourmal2002-04-251-2/+2
| | | | | | | | | | | | Purpose: Bug fix Description: For some unknown to myself reason I used 32-bit integer for INTEGER(HSIZE_T) on Solaris platforms when 64-bit integers are available for both C and Fortran. Solution: Use long long type to describe h(s)size_t_f types Platforms tested: Solaris 2.7 ans 2.6
* [svn-r5262] Elena Pourmal2002-04-251-2/+2
| | | | | | | | | | | | Purpose: Bug fix Description: For some unknown to myself reason I used 32-bit integer for INTEGER(HSIZE_T) on Solaris platforms when 64-bit integers are available for both C and Fortran. Solution: Use the proper KIND argument to define INTEGER(HSIZE_T) Platforms tested: Solaris 2.7 ans 2.6
* [svn-r5261] Purpose:Quincey Koziol2002-04-258-458/+4
| | | | | | | | | | Code cleanup Description: Remove more debugging printf's that were ifdef'd out. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r5260] Purpose:Quincey Koziol2002-04-251-4/+20
| | | | | | | | | | | | | | | | Code cleanup Description: Previously, the I/O pipeline (pline), external file list (efl) and fill- value (fill) structs were passed down the raw data function call chain, even into and/or through functions which didn't use them. Since all three of these pieces of information are available from the dataset creation property list, just pass the dataset creation property list down the function call chain and query for the information needed in a particular function. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r5259] Purpose:Quincey Koziol2002-04-2518-1153/+836
| | | | | | | | | | | | | | | | Code cleanup Description: Previously, the I/O pipeline (pline), external file list (efl) and fill- value (fill) structs were passed down the raw data function call chain, even into and/or through functions which didn't use them. Since all three of these pieces of information are available from the dataset creation property list, just pass the dataset creation property list down the function call chain and query for the information needed in a particular function. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r5257] Purpose:Albert Cheng2002-04-252-3/+1
| | | | | | | | | | | | | | | | | | | Bug fix Description: $(LT_RUN) was used to execute ./H5detect in src/Makefile.in. $RUNTEST was set to $(LT_RUN) which was used to execute sequential executable. $(LT_RUN) is "../libtool --mode=execute". But libtool invokes some commands that are not supported in the Tflops machine. That caused failures during the build and check processes. Solution: Upon investigation, there does not seem to be need to use $(LT_RUN) any more. The "libtool --mode=link" now generates a "fake" executable that is actually a command-script file that can regenerate the real executable with dynamic libraries hooks setup properly. Undo all those $LT_RUN substitute and let $RUNSERIAL execute those sequential executables. Platforms tested: Eirene(serial), modi4(parallel)
* [svn-r5255] Purpose:Quincey Koziol2002-04-251-180/+41
| | | | | | | | | | | Code cleanup Description: Reduce gratuitous differences between H5D_write and H5D_read and also remove distracting debugging printf's that were ifdef'd out. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r5254] Purpose:Quincey Koziol2002-04-251-3/+13
| | | | | | | | | | | Code tweak. Description: Allow the 'fill' parameter of H5S_select_fill to be NULL and allocate a temporary buffer for it, if so. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r5252] Purpose:Bill Wendling2002-04-251-85/+80
| | | | | | | | | | | Update Description: Updated ltmain.sh with the newest version from the 1.4.2 libtool. The one I updated with earlier still had a few bugs in it, for some reason. I got rid of the RPM version on my machine and used the compiled source instead. Platforms tested: Linux
* [svn-r5248] Purpose:Bill Wendling2002-04-241-3/+3
| | | | | | | | | Update Description: Remove the H5config_fortran.h file when doing a "make distclean" and the like. Platforms tested: HP_UX
* [svn-r5246] Purpose:Bill Wendling2002-04-241-0/+2
| | | | | | | | | | | Bug Fix Description: On some platforms, mktemp doesn't work. This would wipe out the tmpdir variable's value. Solution: Reinitialize tmpdir in these cases. Platforms tested: HP-UX
* [svn-r5245] MuQun Yang2002-04-241-0/+31
| | | | | | | | | | | | | | Purpose: windows support of socket function Description: gethostname is treated as socket function in windows and it is defined at winsock.h. for every windows socket function to be called, it must start with WSAStartup and end with WSACleanup Solution: Add WSAstartup and WSACleanup with WIN32 macro. Platforms tested: windows 2000, confirmed at linux 2.2.18
* [svn-r5244] MuQun Yang2002-04-241-1/+5
| | | | | | | | | | | | | | | Purpose: update macro HDstat Description: The original defination of HDstat only defines HDstat as stat. the file size defined at struct stat is int32, However for files greater than 4G(or 2G)file, lookup of file size will fail on windows when using stat. Add a macro for windows,define HDstat as istat64. This fix is the same as HDfstat macro. Solution: Platforms tested: linux 2.2.18
* [svn-r5243] Elena Pourmal2002-04-231-4/+16
| | | | | | | | | | | | | | | | | | | | Purpose: Bug fix Description: Different MPI implementations use different ways to pass MPI objects between C and Fortran layers. MPI-2 defines a standard set of MPI_*_c2f(f2c) functions for this purpose. Unfortunately it is not implemented everywhere and makes code non-portable between different parallel platforms. Solution: Always use MPI_*c2f(f2c) functions in our code. Configure finds out if those functions are available. If not, then we define macros to immulate those functions. Platforms tested: IRIX64-6.5 (modi4) and SP3 (seaborg.nersc.gov). On those platforms functions do not exist and we use macros. Bill will test on HPUX System V (SDSC machine) to check if this works when functions are defined. Preliminary testing showed that it worked.
* [svn-r5242] MuQun Yang2002-04-232-0/+0
| | | | | | | | | | | | | Purpose: update H5pubconf.h Description: Solution: somehow ilne feed format of H5config.h is messed up. corrected. Platforms tested: check with eyes
* [svn-r5241] Purpose:Bill Wendling2002-04-232-4/+4
| | | | | | | | | Fix Description: When doing a TRY_LINK, the compiler complained about lack of parameters being passed to the function. Solution: Added the parameter it wants...
* [svn-r5240] Purpose:Bill Wendling2002-04-232-4/+4
| | | | | | Cleanup Solution: An even better way of using the AC_TRY_LINK macro...
* [svn-r5239] Purpose:Bill Wendling2002-04-232-12/+12
| | | | | | | | Fix Description: Needed to test if the test programs LINK not just COMPILE... Solution: Changed the macro from COMPILE to LINK.
* [svn-r5238] MuQun Yang2002-04-232-0/+0
| | | | | | | | | | Purpose: update H5config.h at *.zip files Description: somehow ilne feed format of H5config.h is messed up. corrected. Platforms tested: win2000
* [svn-r5237] Purpose:Albert Cheng2002-04-231-26/+30
| | | | | | | | Updated the installation instruction for the Tflops machine. Moved the parallel HDF5 building instructions to the front and putting in a NOTE that the sequential version is not supported any more because it has little practical value to build sequential applications for the Tflops machine.
* [svn-r5235] Purpose:Bill Wendling2002-04-238-422/+912
| | | | | | | | | | | | | | | | Update Description: Updated the way we used the AC_INIT macros so that it's current to the new standard way and not deprecated anymore. Also, added a test for some functions during parallel Fortran configure. This required the creation of an H5config_fortran.h file so that we can test for these... Platforms tested: Elena is going to test the changes to the fortran after she checks in her other code. I will test on SDSC machines after getting her code. The other changes were tested on Linux.
* [svn-r5232] Purpose:Albert Cheng2002-04-233-23/+24
| | | | | | | | | | | Bug fix Description: The symbol "RAW" is already defined in some ioctl.h files. Changed it to RAWIO. Platforms tested: Tflops. (I am commiting this from TFLOPS. Will check it out immediate to test on local machines.)
* [svn-r5230] Purpose:Quincey Koziol2002-04-237-251/+173
| | | | | | | | | | | | | | | | | Code cleanup Description: Clean up the H5B_iterate code to not have a single hard-wired iterator for each interface which uses a B-tree, instead accept a function pointer which determines the callback function. This allows additional iterator callbacks to be defined without requiring additional H5B functions to be created. In that spirit, remove the H5B_prune_by_extent call and convert the H5F_istore callback routine for it into a callback routine for H5B_iterate. Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r5229] Updated with support for parallel C API.Albert Cheng2002-04-231-1/+1
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* [svn-r5227] Purpose:Bill Wendling2002-04-222-7/+16
| | | | | | | | | | | Feature Update Description: Modified the AC_OUTPUT macro to coincide with the now-standard way of doing things. I.e., you put all of the files you want to generate into the AC_CONFIG_FILES macro and invode AC_OUTPUT with no parameters. Platforms tested: Linux
* [svn-r5226] Purpose:Bill Wendling2002-04-223-19/+20
| | | | | | | | | | | Feature Update Description: Modified the AC_OUTPUT macro to coincide with the now-standard way of doing things. I.e., you put all of the files you want to generate into the AC_CONFIG_FILES macro and invode AC_OUTPUT with no parameters. Platforms tested: Linux
* [svn-r5225] Purpose:Bill Wendling2002-04-222-57/+81
| | | | | | | | | | | Feature Fix Description: Modified the AC_OUTPUT macro to coincide with the now-standard way of doing things. I.e., you put all of the files you want to generate into the AC_CONFIG_FILES macro and invode AC_OUTPUT with no parameters. Platforms tested: Linux
* [svn-r5224] Purpose:Albert Cheng2002-04-221-0/+75
| | | | | | | | | Update Description: Added the support platform summary paragraph. Thread safe is supported for solaris 2.8_32bit. Platforms tested: hdfsun8
* [svn-r5222] Purpose:Albert Cheng2002-04-222-1/+13
| | | | | | | | feture Description: add calls to show hostname. Platforms tested: eirene (linux 2.2) parallel.
* [svn-r5220] Dan Wells2002-04-226-718/+671
| | | | | | | | | | | | | Purpose: Bug Fix Description: Users could not trace MPI programs when library wasn't compiled for parallel execution Solution: Allow Pablo Trace library to set the processor number and generate the filenames for each processor. Platforms tested: Sun Workstation, HP VClass, Irix 64
* [svn-r5219] Purpose:Quincey Koziol2002-04-2220-36/+43
| | | | | | | | | | Code cleanup Description: Clean up warnings from gcc 3.1 Platforms tested: FreeBSD 4.5 (sleipnir)
* [svn-r5218] Purpose:Albert Cheng2002-04-222-1/+46
| | | | | | | | | | New feature Description: Added h5_show_hostname to display the hostname of the host in which the process runs. It can help identify location of process in multiple processes or batch launching environments. Platforms tested: Eirene (pp)
* [svn-r5215] Purpose:Albert Cheng2002-04-222-8/+28
| | | | | | | | | | | | | | Bug fix Description: Zlib-compression was reported according to if a Z-library (e.g., libz.a) has been found. It actually needs the presence of a valid zlib.h header file and the compress2() routine. Solution: Changed the IF_YES_NO to be more general by accepting multiple arguments and changed the Zlib-compression depends on zlib.h header and the compress2() routine. Platforms tested: Eirene.
* [svn-r5213] Snapshot version 1.5 release 26HDF Admin2002-04-204-5/+5
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* [svn-r5212] Purpose:Albert Cheng2002-04-191-1/+1
| | | | | | | | Code improvement Description: Changed stat to HDstat macro for portability. Platforms tested: eirene.
* [svn-r5209] MuQun Yang2002-04-192-0/+0
| | | | | | | | | | | | | | | | | | Purpose: 1. add install hdf5 lib.,tools batch file 2. add comments and earse warning 3. update H5pubconf.h Description: 1. With the request from supporting team, add a batch file that can automatically move all library, include and binary files to a directory called hdf5lib under the top directory. 2. H5Tinit.c, H5pubconf.h and H5config.h are adapted from UNIX platform but manually maintained on windows. Add a one-line comment to avoid confusions. 3. erase a compiling warning for unlink.dll 4. Update H5pubconf.h, malloc(0) returns a non-NULL pointer for windows; So define H5_MALLOC_WORK on H5pubconf.h Solution: Platforms tested: windows 2000
* [svn-r5208] MuQun Yang2002-04-191-2/+2
| | | | | | | | | | Purpose: a bug fix Description: should use HDfstat instead of fstat Solution: Platforms tested: linux 2.218, windows 2000
* [svn-r5207] Purpose:Albert Cheng2002-04-191-30/+46
| | | | | | | | | | Feature Description: Added option -c to allow skipping file system Checking. This allows users to run the test even if the program thinks it may fill up the file system. Platforms tested: eirene
* [svn-r5205] Purpose:Albert Cheng2002-04-1911-19/+17
| | | | | | | | | | | | | | Code cleanup Description: Platform dependent code related to the struct stat and fstat calls polluted source codes. Hard to maintain. Solution: Platform dependent code are moved to H5private.h and then internal code can #include H5private.h. Repeat those macro definition for the stdio and multi drivers since they area examples for writing a virtual file driver. They must not use any internal code. Platforms tested: eirene (parallel), modi4 (serial including gass driver.)
* [svn-r5203] Purpose:Quincey Koziol2002-04-185-1063/+1031
| | | | | | | | | | Code cleanup Description: Re-indented new code to match coding style of rest of library. Platforms tested: FreeBSD 4.5 (sleipnir)