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* [svn-r16363] Description:Scot Breitenfeld2009-01-271-5/+13
| | | | | | | | Merged changes from the trunk into the branch. Used the command: svn merge -r 16197:16362 http://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran Platforms tested: smirom, liberty
* [svn-r16361] Purpose: Fix potential error with H5Tset_orderNeil Fortner2009-01-273-0/+171
| | | | | | | | Description: H5Tset_order will now properly reject H5T_ORDER_NONE for most datatypes. Previously this could cause major problems as the file could not be flushed. Tested: jam, smirom (h5committest)
* [svn-r16359] merge 16348Pedro Vicente Nunes2009-01-274-3/+6
| | | | | | | bug fix a new line was not inserted at the end of output, causing diff to complain between linux and frebsd tested: linux (freebsd tested on the trunk)
* [svn-r16356] Description:Quincey Koziol2009-01-2717-248/+523
| | | | | | | | | | | Bring r16354 back from trunk: Refactor internal layout information, making it easier to add another type of chunk index. Tested on: FreeBSD/32 (duty) (other configurations tested with original change)
* [svn-r16355] bug fix: some printf calls instead of parallel_print made some ↵Pedro Vicente Nunes2009-01-271-35/+35
| | | | | | tests to fail tested: on the trunk
* [svn-r16351] merge 16348Pedro Vicente Nunes2009-01-2650-126/+211
| | | | | | | | #1368 (E1) h5diff: implement "not comparable" messages. Implemented RFC. The new option is <-c, --compare List objects that are not comparable> added some test cases tested: windows, linux
* [svn-r16350] Purpose: enhancements the H5Tinsert, H5TpackNeil Fortner2009-01-263-34/+384
| | | | | | | | | | | | Description: H5Tinsert will now detect when a compound type that was previously not packed becomes packed due to out of offset order insertion of a member. H5Tinsert will now attempt to keep members sorted by offset order. This should improve performance of H5Tinsert in all cases due to the fact that it no longer needs to check every other member for overlapping, and should improve performance of H5Tpack and possibly type conversion when compounds are packed out of order. Tested: jam, smirom (h5committest)
* [svn-r16346] Snapshot version 1.8 release 2 (post4)HDF Tester2009-01-257-22/+22
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* [svn-r16343] Temporarily undo skipping the h5diff test of hyper1.h5 and ↵Larry Knox2009-01-221-4/+6
| | | | hyper2.h5 that hangs on THG machines to see if the problem is fixed. Simple change - tested on jam.
* [svn-r16341] Description:Frank Baker2009-01-2222-23/+23
| | | | | | Changed 'THG' to 'The HDF Group' in various HDF5 source files, most of which are <subdirectory>/COPYING. -- Closes Bugzilla entry 1403.
* [svn-r16339] Purpose:Mike McGreevy2009-01-221-5/+0
| | | | | | | | | | | | | | Bug Fix Description: Removing some unnecessary headers from test/cache.c which snuck their way into one of my previous check-ins ... thanks to Allen for catching this while testing on windows. Tested: Windows, Linux
* [svn-r16334] Added definition for two new macros ↵Raymond Lu2009-01-211-0/+7
| | | | | | H5_HAVE_C99_DESIGNATED_INITIALIZER and H5_HAVE_C99_FUNC. Tested on OpenVMS.
* [svn-r16332] Bug 948.Albert Cheng2009-01-201-2/+8
| | | | | | | The test "h5diff -v h5diff_hyper1.h5 h5diff_hyper2.h5" sometimes hangs in THG machines. Skip it until its hanging is resolved. Tested: Jam pp only since it is a simple script change.
* [svn-r16331] Snapshot version 1.8 release 2 (post3)HDF Tester2009-01-187-22/+22
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* [svn-r16326] Fixed a small problem in file names. Some new file names were ↵Raymond Lu2009-01-161-0/+4
| | | | | | left out for OpenVMS. To be tested on OpenVMS.
* [svn-r16325] Purpose:Mike McGreevy2009-01-151-102/+77
| | | | | | | | | | | | | | | Code Cleanup Description: - Pulled out repetetive cache stats code into its own new macro. - Converted HDasserts in verification macros to if / HGOTO_ERROR statments in order to keep code consistent. Tested: jam (also tested smirom/liberty in trunk)
* [svn-r16322] Purpose:Albert Cheng2009-01-141-0/+2
| | | | | | | | | | | Improvement Description: Modified the warning messages from the Version mismatch checking to suggest the users to try recompiling or checking the shared lib setting. Platforms tested: Tested in Jam only since it was just a simple text string changes.
* [svn-r16320] merge 16319Pedro Vicente Nunes2009-01-141-32/+68
| | | | | | add conditinal nan detection to some missing places tested: windows, linux
* [svn-r16314] Added support for OpenVMS pathname for external link.Raymond Lu2009-01-146-32/+133
| | | | Tested on OpenVMS and jam.
* [svn-r16313] merge 16301Pedro Vicente Nunes2009-01-141-1/+1
| | | | | | | | | | | | | Add a mention to the usage that the default minimum size for compression is 1024 bytes M - is an integer greater than 1, size of dataset in bytes (default is 1024) #bgz 1426 tested: windows, linux
* [svn-r16312] merge 16300Pedro Vicente Nunes2009-01-1417-96/+136
| | | | | | | | | Added an option to avoid dealing with NaNs -N, --nan Avoid NaNs detection Note: there is no shell script run for datasets with NaN because the output is non portable (different results and NaN strings for different systems) Tested: windows, linux
* [svn-r16310] merge 16299Pedro Vicente Nunes2009-01-145-7/+74
| | | | | | | | | | | Print a message of Storage: information not available When displaying storage information for VL and dataset region types Added 2 shell runs that display this information #818 Tested: windows, linux
* [svn-r16309] Purpose: Fix problem with H5TpackNeil Fortner2009-01-143-4/+133
| | | | | | | | | Description: If a compound type was packed except for some extra space at the end, H5Tpack would not modify the type and the extra space would remain. Changed H5T_is_packed to fix this behaviour. Tested: jam, smirom (h5committest - linew down)
* [svn-r16307] Description:Quincey Koziol2009-01-1411-18/+251
| | | | | | | | | | | | | | Bring r16306 back from trunk: Add detection of C99 "designated initializers" to configure script and use new H5_HAVE_C99_DESIGNATED_INITIALIZER macro to conditionally compile default layout variables in src/H5Pdcpl.c Also, minor code cleanups, etc. Tested on: FreeBSD/32 6.3 (duty) in debug mode (Other platforms tested on revise_chunks branch)
* [svn-r16304] Description:Scot Breitenfeld2009-01-131-0/+2
| | | | | | | | | added: !DEC$ATTRIBUTES reference :: for character strings being passed in to C to fix bug in VMS for functions h5sdecode_f and h5sencode_f.
* [svn-r16302] Maintenance: Removed a debug qualifier that caused batch job to ↵Elena Pourmal2009-01-131-1/+1
| | | | | | skip basic Fortran test.
* [svn-r16297] Neil Fortner2009-01-111-2/+7
| | | | | | Disable more file drivers incompatible with family file driver in external_set_elink_cb in links.c. Tested: jam check-vfd
* [svn-r16295] Changes to links.c to prevent the core file driver from being ↵Neil Fortner2009-01-101-8/+9
| | | | | | | | used as the member file driver for a family file. This was causing problems with check-vfd. Tested: jam
* [svn-r16293] Purpose:Mike McGreevy2009-01-101-2/+1
| | | | | | | | | | | | | Bug Fix Description: Removed problematic debugging statement and switched one remaining TRUE verbose statement to FALSE in cache_common.c Tested: jam, liberty
* [svn-r16291] Purpose:Mike McGreevy2009-01-096-216/+2347
| | | | | | | | | | | | | | | svn merge Description: merging revision 16290 from trunk to 1.8 (revision 16290 contains the code that maintains a min_clean_fraction of the metadata cache in serial). Tested: smirom, jam
* [svn-r16288] Fix one of the new tests in links.c. external_set_elink_cb no ↵Neil Fortner2009-01-091-20/+22
| | | | | | | | longer copies the driver information from property list to property list. Tested: jam
* [svn-r16285] - h5repack: When user doesn't specify a chunk size, h5repack ↵Pedro Vicente Nunes2009-01-081-4/+10
| | | | | | | | | | | | now defines a default chunk size as the same size of the size of the hyperslab used to read the chunks. The size of the hyperslabs are defined as the size of each dimension or a predefined constant, whatever is smaller. This assures that the chunk read fits in the chunk cache. (PVN - 2008/11/21) - H5Dset_extent: when shrinking dimensions, some chunks were not deleted. (PVN - 2009/01/8)
* [svn-r16282] Purpose: Add functions to allow more flexible traversal of ↵Neil Fortner2009-01-0815-25/+605
| | | | | | | | | | | external links. Description: Added H5Pset/get_elink_cb to allow the user to specify a callback function to be called whenever an external link is traversed. Added H5Pset/get_elink_acc_flags to allow the user to specify the file access flags to use to open the target file of an external link. All these properties are set on a LAPL. Tested: jam (trunk version tested with h5committest)
* [svn-r16280] Description:Quincey Koziol2009-01-0831-494/+582
| | | | | | | | | | | | | | Bring revision 16278 back from revise_chunks branch: Update layout information in DCPL to unify all information in one underlying property and switch to using H5O_layout_t for storing it, which simplifies things considerably. Also, fix many compiler warnings. Tested on: FreeBSD/32 6.3 (duty) in debug mode (Original patch tested on many machines)
* [svn-r16276] Update. Commented out H5_HAVE_RAND_R because OpenVMS doesn't ↵Raymond Lu2009-01-081-1/+1
| | | | | | have rand_r function. Tested on OpenVMS.
* [svn-r16275] Added a test for shrinking to 0 dimemsionsPedro Vicente Nunes2009-01-081-226/+351
| | | | Tested: windows, linux
* [svn-r16270] Bug fix.Albert Cheng2009-01-061-37/+12
| | | | | | | | | The Tail command in jam (a newer linux) does not accept the +2l option. It ended up wiping most of the release_doc/RELEASE.txt file contents. Replaced the "tail +2l" by "sed -e 1d". Tested: Tested in Jam to verify it functions properly again.
* [svn-r16268] Temparorily comment out some failing tests for Open VMS. After ↵Raymond Lu2009-01-061-0/+6
| | | | | | | | fixing the problem, I will uncomment them. Tested on Open VMS and jam.
* [svn-r16267] Revert RELEASE.txt to the version before it was mostly deleted ↵Neil Fortner2009-01-061-1/+419
| | | | | | | | by hdftest. Update version number listed at the top. Tested: vim
* [svn-r16263] Description:Scot Breitenfeld2009-01-051-1/+1
| | | | | | | | added missing reference in h5lget_name_by_idx_f: !DEC$ATTRIBUTES reference :: for character strings being passed in to C to fix bug in VMS.
* [svn-r16234] Description:Scot Breitenfeld2008-12-301-2/+0
| | | | | | | Cosmetic changes, Also tested -r16232 on: Jam (intel 10.1) Smirom (intel 10.1)
* [svn-r16232] Description:Scot Breitenfeld2008-12-302-13/+17
| | | | Added chunk property to the data set because changes H5Dset_extent now require/check the the data set is chunked.
* [svn-r16228] cleaned more linux warningsPedro Vicente Nunes2008-12-291-23/+21
| | | | tested: linux
* [svn-r16226] merge 16225Pedro Vicente Nunes2008-12-291-18/+0
| | | | | remove debug messages tested: windows, linux
* [svn-r16224] merge from 16223Pedro Vicente Nunes2008-12-292-159/+1707
| | | | | | | Modified H5Dset_extent so that it fails when called for compact datasets and contiguous with no external storage new test program: It adds tests for several ranks, use of fill value or not, compression, different fill value allocation times, use of different storage layouts, and external files tested: windows, linux
* [svn-r16221] Snapshot version 1.8 release 2 (post2)HDF Tester2008-12-287-22/+22
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* [svn-r16218] Merging trunk 16217Pedro Vicente Nunes2008-12-236-2016/+2106
| | | | | | | | Bug fix PG compiler complains about array out of bounds (a rank of zero was not checked) Adding a scalar dataset to the test generator program. this case is run on a previous existing run, the case was added to 2 existing files Tested: windows, linux
* [svn-r16216] Updated for removed file.Albert Cheng2008-12-231-1/+0
| | | | Tested by bin/chkmanifest.
* [svn-r16215] Maintenance:Elena Pourmal2008-12-2221-115/+93
| | | | | | | | | | | Updated command files in order to build in a batch queue; added lines that define compiler qualifiers and location of the zlib library in case one has to build manually in a current directory. Deleted command file in the vms/tools/h5ls directory that is no longer needed. Platforms tested: VMS server (build passed; tests are running now)
* [svn-r16213] Added HDlseek to the H5FD_core_truncate function in H5FDcore.c ↵Raymond Lu2008-12-222-1/+8
| | | | | | | | | to rewind the file pointer to the beginning of the file. Otherwise, the file might be re-extended later on Open VMS. Also updated the return value for the HDlseek to be more appropriate. Tested on Open VMS.
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