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* [svn-r22329] Add examples/README file to be installed with examples.Larry Knox2012-05-015-3/+22
| | | | | | It was in hdf5 v1.8.8, but not checked into the 1.8 branch. :Text file only, but tested with h5committest.
* [svn-r22325] Description:Quincey Koziol2012-04-291-1/+1
| | | | | | | | | | Bring r22324 from trunk to 1.8 branch: Change name of MPE log file produced from "cpilog" (which was the name used in the example code we were referencing) to "h5log". Tested on: None, too trivial, eyeballed only...
* [svn-r22322] Description:Jonathan Kim2012-04-271-2/+3
| | | | | | | | | | The ph5diff (parallel h5diff) can intermittently hang in parallel mode when comparing the two HDF5 files that contains common name objects with different object types. (HDFFV-8003) Skip only the specific test for parallel until the fix has made. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r22320] Purpose:Jonathan Kim2012-04-2715-7/+129
| | | | | | | | | | | | | | | Fix for HDFFV-7998-h5diff: incorrect behavior and output for comparing symbolic dangling links without following-symlinks option Description: Fix not to check and display dangling link status without --follow-symlinks option. Berfor the fix, when comparing symbolic link to symbolic link without follow-symlinks option, h5diff followed to check if those links are dangling or not. It caused to display output incorrectly (dangling link instead of symbolic link). The fix also improved performance when comparing lots of symbolic links without the --follow-symlinks option. Test cases were added and tagged with jira#. This merged from HDF5 trunk r22319. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), cmake (jam)
* [svn-r22313] Description:Quincey Koziol2012-04-231-0/+1
| | | | | | | | | | Bring r22312 from trunk to 1.8 branch: Correct error reported by user (Martin Otte) where we weren't using realloc'ed buffer in MPI datatype code. Tested on: Mac OSX/64 10.7.3 (amazon) w/parallel
* [svn-r22309] Fixed a typoDana Robinson2012-04-201-1/+1
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* [svn-r22307] Removed references to ancient platforms and compilers from the ↵Dana Robinson2012-04-201-82/+15
| | | | INSTALL document.
* [svn-r22301] Purpose:Jonathan Kim2012-04-191-0/+3
| | | | | | | | | | | | Fix for HDFFV-8001 - h5unjam: segfault when used -V (show version) option Description: h5unjam has an option '-V' to display version information. "h5unjam -V" caused segfulat for 1.8.9 pre-release. Merged from HDF5 trunk 22300 Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22291] Description:Quincey Koziol2012-04-1747-2693/+2724
| | | | | | | | | | Bring r22287 from trunk to 1.8 branch: Clean up more FUNC_ENTER/FUNC_LEAVE macros and move H5D & H5T code toward the final design (as exemplified by the H5EA & H5FA code). Tested on: Mac OSX/64 10.7.3 (amazon) w/debug & parallel
* [svn-r22282] Issue 7934 - The data sieve buffer size was for all the ↵Raymond Lu2012-04-123-9/+34
| | | | | | | | | | | | datasets in the file. It could waste memory if any dataset size is smaller than the sieve buffer size. Now the library picks the smaller one between the dataset size and the sieve buffer size from the file access property. (There is no change to hl/ and fortran/ directories. They were property changes during the merge from the trunk) Tested on jam, koala, and ostrich.
* [svn-r22281] Purpose:Jonathan Kim2012-04-1110-23/+233
| | | | | | | | | | | | | Fix for HDFFV-7993 - h5repack fails with error "chunk size must be <= maximum dimension size for fixed-sized dimensions" Description: Fixed a failure when change the chunk size of a specified chunked dataset with unlimited max dims. Also took care of converting to contiguous and compact from the dataset. Test cases were added and tagged with jira#. Merged from HDF5 trunk r22277. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22275] Clear up examples vs applications instances and add minimum file.Allen Byrne2012-04-111-15/+36
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* [svn-r22269] - Clear out RELEASE.txt ahead of 1.8.10 changesMike McGreevy2012-04-092-154/+35
| | | | | | - Update version references in RELEASE.txt - Add reminder to HISTORY-1_8.txt that it needs the completed RELEASE.txt from the 1.8.9 branch when it's done
* [svn-r22268] Update 1.8 branch version to 1.8.10-snap0Mike McGreevy2012-04-0914-31/+31
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* [svn-r22264] Use correct index for inserting null terminatorAllen Byrne2012-04-091-9/+9
| | | | Tested: windows under debug
* [svn-r22262] Update version number in examplesAllen Byrne2012-04-091-4/+4
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* [svn-r22261] Update list of CMake optionsAllen Byrne2012-04-091-45/+62
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* [svn-r22259] Snapshot version 1.8 release 9 (snap16)HDF Tester2012-04-097-23/+23
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* [svn-r22256] Added note for 1.8.9: Autotools configure problem and cmake optionsAllen Byrne2012-04-061-2/+8
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* [svn-r22252] Fixed a bug in H5Ocopy(): When copying an opened object, call ↵Vailin Choi2012-04-0510-12/+407
| | | | | | | | | | | | | | | | | | | | | the object's flush class action to ensure that cached data is flushed so that H5Ocopy will get the correct data. (HDFFV-7853) this line, and those below, will be ignored-- _M . M test/objcopy.c M src/H5Ocopy.c M src/H5Goh.c M src/H5Dint.c M src/H5Opkg.h M src/H5Doh.c M src/H5Toh.c M src/H5O.c M src/H5Dpkg.h M release_docs/RELEASE.txt _M fortran
* [svn-r22248] Added new files and tests to CMakeLists.txtAllen Byrne2012-04-043-7/+68
| | | | Tested: local linux
* [svn-r22245] Description:Quincey Koziol2012-04-031-3/+3
| | | | | | | | | | | Bring r22244 from trunk to 1.8 branch: Correct use of deprecated API routines in test routine. Tested on: Linux/PPC 2.6 (ostrich) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (ember) w/Intel compilers, w/C++ & FORTRAN, parallel, in production mode
* [svn-r22239] Description:Quincey Koziol2012-04-0212-164/+610
| | | | | | | | | | | | | | | | | | | Bring r22233 from trunk to 1.8 branch: Correct several errors in fractal heap code: root indirect block was getting pinned/protected more than once, "single" free space sections weren't getting "re-parented" correctly when the heap transitioned between having a root indirect block and a root direct block, and several related issues. Also cleaned up some warnings in library/tests. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Mac OSX/64 10.7.3 (amazon) w/debug
* [svn-r22237] Description:Quincey Koziol2012-04-021-1/+1
| | | | | | | Switch 'snprintf' -> 'HDsnprintf' Tested on: (eyeballed only, very simple)
* [svn-r22234] Snapshot version 1.8 release 9 (snap15)HDF Tester2012-04-027-22/+22
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* [svn-r22232] Description:Quincey Koziol2012-04-011-1/+1
| | | | Fix another typo in MANIFEST
* [svn-r22231] Description:Quincey Koziol2012-04-012-0/+3
| | | | | | | | | | | | | | | Bring r22229 from trunk to 1.8 branch: Add 'H5O_mcdt_search_cb_t' to bin/trace script and re-run the bin/reconfigure script. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode
* [svn-r22230] Description:Quincey Koziol2012-04-011-0/+1
| | | | Correct typo in MANIFEST file
* [svn-r22228] Description:Quincey Koziol2012-04-0145-340/+4269
| | | | | | | | | Bring r22219 from trunk to 1.8 branch: (with release manager's blessing) Merge "file image" changes from feature branch back to trunk. Tested on: h5committested
* [svn-r22225] Description:Quincey Koziol2012-04-012-8/+33
| | | | | | | | | | | | Bring r22220, r22221 & r22224 from trunk to 1.8 branch: improved h5repack metadata block size testing, and some code cleanups. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode
* [svn-r22223] Description:Quincey Koziol2012-04-011-1/+75
| | | | | | | Update GCC compiler flags for new 4.7.0 release. Tested on: Mac OSX/64 10.7.3 (amazon) w/gcc 4.7.0
* [svn-r22217] Description:Quincey Koziol2012-03-311-0/+5
| | | | Added note about new '-S' option to h5stat and '-M' option to h5repack.
* [svn-r22216] Description:Quincey Koziol2012-03-316-86/+124
| | | | | | | | | | | | | Bring r22180, r22181 and r22214 from trunk to 1.8 branch: Add new "metadata block size" command line option ('-M <x>' or '--metadata_block_size=<x>') for h5repack. [With release managers blessing] Tested on: Mac OSX/64 10.7.3 (amazon) w/debug) (h5committest upcoming)
* [svn-r22215] Description:Quincey Koziol2012-03-3128-158/+4642
| | | | | | | | | | | Bring r22171 from trunk to 1.8 branch: Bring "merge committed datatypes during H5Ocopy" feature from branch to trunk. (Also has some minor bugfixes with it) Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (h5committest coming up)
* [svn-r22212] Brought r22211 from the trunkDana Robinson2012-03-302-330/+346
| | | | | | | | | | | STDIO VFD fixes (HDFFV-7917). Mainly Windows correctness issues (propagated from the SEC2 VFD and the old Windows VFD) and issues where large files are accessed. Tested on: 64-bit Mac OS-X 64-bit Windows 7 jam koala ostrich
* [svn-r22210] Purpose:Mike McGreevy2012-03-304-37/+39
| | | | | | | | | | | Merge fix for HDFFV-944 (r22149) from trunk to hdf5_1_8. (Also reran bin/reconfigure which updated trace information for the two new MPI functions for getting/setting atomicity in src/H5Fmpi.c) Tested: h5committest
* [svn-r22209] Purpose: Fixed bugs HDFFV-2761 & HDFFV-7852Binh-Minh Ribler2012-03-309-82/+72
| | | | | | | | | | | | | | | | | | | Description: - Replaced PredType::NotAtexit() with PredType::AtExit(H5CPP_EXITED) and used PredType::AtExit as a flag to detect when all predefined types have been destroyed. Then, H5close will be called to terminate the library after its being re-initiated when the PredType destructors were activated. This change removed the memory leaks shown by the user's sample program in HDFFV-2761. - Added H5CPP_EXITED for PredType::AtExit to use as a flag - Rearranged constructors in CompType to fix bug HDFFV-7852 - Updated some inaccurate comments - Removed stream functions from FileAccPropList - Replaced H5_VMS with appropriate macro in H5IdComponent.cpp Platforms tested: Linux/32 2.6 (jam) Linux/64 2.6 (amani) SunOS 5.10 (linew)
* [svn-r22208] Purpose:Mike McGreevy2012-03-303-2/+5
| | | | | | Merge fix for HDFFV-398 (r22146 and r22147) from trunk to hdf5_1_8. Tested: h5committest
* [svn-r22207] Added new release text for new C/Fortran high level APIs, new ↵Scot Breitenfeld2012-03-301-3/+10
| | | | | | fortran APIs and bug fixes.
* [svn-r22206] Merged changes from the trunk in to the branch, used:Scot Breitenfeld2012-03-3010-28/+716
| | | | | | svn merge -r r22040:22205 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/hl Tested: jam (gnu and intel compilers)
* [svn-r22205] Brought changes from the trunk in the the branch, used:Scot Breitenfeld2012-03-3010-82/+364
| | | | | | svn merge -r r21721:22163 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran Tested: jam (gnu)
* [svn-r22203] Add extra search termAllen Byrne2012-03-291-2/+2
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* [svn-r22200] Update MINGW configuration (MinGW is Windows except for some ↵Allen Byrne2012-03-292-19/+19
| | | | issues)
* [svn-r22196] Add PASS_REGULAR_EXPRESSION property to fortran tests to verify ↵Allen Byrne2012-03-291-0/+3
| | | | | | 0 errors. Some platforms do not return proper value in CMake ADD_TEST and results in a false positive. Brought from trunk
* [svn-r22191] Update MINGW configurationAllen Byrne2012-03-291-8/+8
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* [svn-r22188] Purpose:Jonathan Kim2012-03-2920-291/+313
| | | | | | | | | | | | | Fix for HDFFV-7644 GMQS: h5diff - incorrect behaviors when comparing HDF5 files with different type of objects (dataset, group, type) as common objects Description: Fixed failure for comparing same named object with different object types in comparing groups. (common object comparison) Prior to the fix, h5diff resulted in error. After the fix, h5diff detects such case as non-comparable and display messages accordingly. Test cases were added and tagged with jira#. Merged from HDF5 trunk 22176. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Cmake (jam)
* [svn-r22186] MinGW compile issues fixed.Allen Byrne2012-03-297-29/+73
| | | | Tested: windows (big test using stdio only fails - this will be filed for further investigation)
* [svn-r22179] Pulled trunk r22178 into 1.8 branch:Dana Robinson2012-03-291-10/+1
| | | | | | | Fixed a bad merge where truncate was called twice in the core VFD. Minor change: tested on jam, koala, ostrich and 64-bit Windows 7 with the core VFD set.
* [svn-r22177] Description:Quincey Koziol2012-03-288-109/+178
| | | | | | | | Merge "summary" option ('-S') from trunk to 1.8 branch. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (h5committest forthcoming)
* [svn-r22174] Port r22173 from trunk to 1.8 branchNeil Fortner2012-03-284-3/+186
| | | | | | | | | | | | | | | | | | Purpose: Fix HDFFV-7762 Description: When copying an object with attribute creation order tracked, the attribute creation order was not copied correctly to the destination file, causing an error if the creation order was also indexed (due to attempting to insert duplicate keys) or incorrect creation orders otherwise. Fixed to copy the creation order correctly. Also fixed the attribute character set not being copied, and fixed an issue where an attribute opened with H5Aopen (or similar, but not by_idx), from an object using the latest format but without creation order being tracked, would always report the creation order as 0 (and marked as valid). Tested: jam, koala, ostrich (h5committest), durandal
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