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* [svn-r26717] Merge revisions 26387, 26649, 26650, 26678, and 26691 from ↵Mohamad Chaarawi2015-04-0321-109/+117
| | | | trunk to squish warnings.
* [svn-r26713] Merge r26712 from trunk to v18.hdf5_1_8_15_precodefreeze_final_commitAlbert Cheng2015-04-031-0/+11
| | | | | | | | | | | | | Bug fix: cmakehdf5 broken because zlib is no longer configure in by default. That broke the testings as some testfiles have zlib compressed datasets. Added options control to enable the linking of zlib external libarary by default and turn off the szip library linking as szip library may not be avaiable. This matches the established settings. Tested: run cmakehdf5 by hand in jam and platypus. Also tested in wren but it failed in the testing stage. Also tried "cmakehdf5 --script" in jam. It failed.
* [svn-r26710] Update fortran cmake commandsAllen Byrne2015-04-021-22/+13
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* [svn-r26709] Port r26690 from trunk to 1.8 branch.Neil Fortner2015-04-023-0/+39
| | | | | | | | | | | | | Tested: jam, koala, ostrich (h5committest) Log from r26690: Fix error in H5Sextent_copy When the selection is set to all, H5Sextent_copy did not update the number of elements in the selection in the destination space. Fixed H5Sextent_copy to do this. Added tests for this functionality. Tested: jam, koala, ostrich (h5committest)
* [svn-r26708] Port r26301 from trunk to 1.8 branch.Neil Fortner2015-04-023-3/+99
| | | | | | | | | | | | Tested: jam, koala, ostrich (h5committest) Log from r26633: Description: Bring Neil's fix for error in H5S_extent_copy() back to the trunk. Tested on: Mac OSX/64 10.10.2 (amazon) w/serial (h5committest forthcoming)
* [svn-r26707] Port r26633 from trunk to 1.8 branch.Neil Fortner2015-04-023-0/+17
| | | | | | | | | | | | Tested: jam, koala, ostrich (h5committest) Log from r26633: Add -D_DEFAULT_SOURCE to CPPFLAGS on Linux systems. -D_BSD_SOURCE is deprecated in recent versions of glibc, and -D_DEFAULT_SOURCE is the replacement. Keep -D_BSD_SOURCE for now to support older systems. gcc will not issue a warning about -D_BSD_SOURCE being deprecated when -D_DEFAULT_SOURCE is supplied as well. Tested: jam, koala, ostrich (h5committest)
* [svn-r26706] Merge r26702 of trunk to v18 branch.Albert Cheng2015-04-021-3/+16
| | | | | | | | | | | | | HDFFV-8667: h5repack crashes on enumerated 8-bit type nested in compound type. Description: The test added failed in some machines because the data file contains infinity values that different machines print them differently as "inf", "INF", "Inf", ... Solution: Added a "ignorecase" option to TOOLTEST() to do caseless matching between generated output vs expected output. This solved most machines problem for now. Tested: h5committest, emu by hand for both development and production modes. But cmake built h5dump failed to read the data file. Using the same source to build h5dump by autotools produced a h5dump that can read the test data file. Don't know why cmake could not produce a correct binary.
* [svn-r26703] Merge of r26392 from trunk.Dana Robinson2015-04-017-62/+263
| | | | | | | | | | | Adds new memory allocation functions that use the library's memory allocator. Intended for use with third-party filter code. Tested on: h5committest, Solaris (emu), OS X (quail) Note: emu fails with the existing Inf/inf case problem in h5dump but no other tests fail.
* [svn-r26700] Generators are only built staticAllen Byrne2015-04-0111-29/+30
| | | | Plugin test for disable state does not print error stack and does not print FAILED
* [svn-r26697] HDFFV-9131: Remove obsolete/unneeded sections.Allen Byrne2015-04-0146-646/+61
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* [svn-r26696] Merge from trunkAllen Byrne2015-04-017-123/+336
| | | | Tested local linux cmake
* [svn-r26688] HDFFV-8667: h5repack crashes on enumerated 8-bit type nested in ↵Albert Cheng2015-04-017-1/+25762
| | | | | | | | compound type Fixed and added user provided test file to verify the fix. (Test added to h5dump/testh5dump.sh.in). Tested: h5committest
* [svn-r26686] Add new test from test scriptAllen Byrne2015-03-311-1/+19
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* [svn-r26681] Merge r26677 from trunk.Albert Cheng2015-03-316-25/+73
| | | | | | | | | | | | | | | HDFFV-8957: h52gif crashes when run against one of our own examples The tool claimed it could handle 24bit images but there was no code to handle it. (or might be there were but was removed by previous revisions.) Also discovered that it does not accept multiple images nor -p for palette as its user document and online help message indicated. Solution: Added code to verify dimension sizes are within 8 bit raster images limit and added tests to verify the tools correctness. Need to update user document tool. Tested: h5committested.
* [svn-r26676] HDFFV-9201: Create md5s for bzip, gzip and zip filesAlbert Cheng2015-03-311-11/+15
| | | | | | An md5 checksum is produced for each archive created and stored in the md5 file Tested: jam by hand.
* [svn-r26674] merged r26657 and r26642 from the trunk into the branch.Scot Breitenfeld2015-03-316-10/+195
| | | | tested: h5committest
* [svn-r26672] Since cmake always redoes everything from start, I change the ↵Albert Cheng2015-03-311-1/+1
| | | | | | | | logfiles to start fresh everytime. Tested: platypus
* [svn-r26666] Description:Frank Baker2015-03-301-1/+1
| | | | Update HDF Group copyright dates to include 2015.
* [svn-r26663] added option to configure support for fortran2003 API.Albert Cheng2015-03-301-1/+12
| | | | | | | --enable-fortran2003 | --disable-fortran2003: enable or disable fortran2003 API. Default is off. Tested: by hand in platypus.
* [svn-r26658] Correct windows define for exports/importsAllen Byrne2015-03-304-145/+145
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* [svn-r26656] Correct windows define for exports/importsAllen Byrne2015-03-301-1/+1
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* [svn-r26654] Bring trunk CMake changes to branch.Allen Byrne2015-03-3020-357/+226
| | | | Tested: local linux
* [svn-r26648] Description:Quincey Koziol2015-03-308-202/+7
| | | | | | | | | | | | | Bring r26635 from trunk to 1.8 branch: Bring r26651 from autotools_rework branch to trunk: Remove the VSNPRINTF_WORKS macro, it's working around bugs in old SGI & HP compilers. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on trunk for 2+ days)
* [svn-r26644] Snapshot version 1.8 release 15 (snap13)HDF Tester2015-03-295-17/+17
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* [svn-r26638] Description:Quincey Koziol2015-03-288-341/+5
| | | | | | | | | | | | | Bring r26598 from trunk to 1.8 branch: Bring r26501 from the autotools_rework branch to the trunk: Remove ULLONG_TO_LDOUBLE_PRECISION macro/define, as it's targeting bugs in the FreeBSD and Cygwin compilers. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on trunk for 2+ days)
* [svn-r26637] Description:Quincey Koziol2015-03-287-93/+3
| | | | | | | | | | | | | Bring r26597 from trunk to 1.8 branch: Bring r26500 from autotools_rework branch to trunk: Remove the LLONG_TO_FP_CAST_WORKS macro/define, as it targets problems with the Visual Studio 6 compilers. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on trunk for 2+ days)
* [svn-r26636] Description:Quincey Koziol2015-03-2811-136/+8
| | | | | | | | | | | | | Bring r26596 from trunk to 1.8 branch: Bring r26499 from autotools_rework branch to trunk: Remove ULLONG_TO_FP_CAST_WORKS macro/define, as it only applies to older platforms we aren't supporting any longer. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on trunk for 2+ days)
* [svn-r26630] Description:Quincey Koziol2015-03-2710-157/+1
| | | | | | | | | | | | | Bring r26595 from trunk to 1.8 branch: Bring r26494 from autotools_rework branch back to trunk: Remove the LDOUBLE_TO_UINT_ACCURATE macro/define, it was addressing problems with older Intel compilers on Linux that are no longer supported. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on trunk for 2+ days)
* [svn-r26628] Description:Quincey Koziol2015-03-2710-334/+5
| | | | | | | | | | | | | | Bring r26591 from trunk to 1.8 branch: Bring r26492 from autotools_rework branch back to trunk: Remove the FP_TO_ULLONG_ACCURATE and FP_TO_ULLONG_RIGHT_MAXIMUM macros/defines, which were added to address problems with older PGI compilers and HP-UX systems and are no longer supported. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel) (Daily tested for 2+ days on trunk)
* [svn-r26626] Description:Quincey Koziol2015-03-279-323/+4
| | | | | | | | | | | | | Bring r26587 from trunk to 1.8 branch: Bring r26489 from autotools_rework branch to trunk: Remove the ULONG_TO_FP_BOTTOM_BIT_ACCURATE macro/define, as it was added for SGI systems and old Solaris systems, which are no longer supported. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on trunk for 2+ days)
* [svn-r26624] Description:Quincey Koziol2015-03-278-177/+2
| | | | | | | | | | | | | Bring r26584 from trunk to 1.8 branch: Bring r26485 from the autotools_rework branch to the trunk: Remove the ULONG_TO_FLOAT_ACCURATE macro/define, we no longer support the Sandia system where it was necessary. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (Daily tested on trunk for 2+ days)
* [svn-r26617] Merged r26616 from the trunk into the branch.Scot Breitenfeld2015-03-271-1/+0
| | | | Tested: Text changes only.
* [svn-r26615] merged r26575 from the trunk into the branch.Scot Breitenfeld2015-03-276-48/+52
| | | | Tested: h5committest
* [svn-r26614] fixed typo.Scot Breitenfeld2015-03-271-1/+1
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* [svn-r26613] Added changes to Fortran APIs.Scot Breitenfeld2015-03-271-0/+11
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* [svn-r26610] Added changes to HL and Fortran.Scot Breitenfeld2015-03-271-6/+43
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* [svn-r26600] Fix CMake target calls to add new parameterAllen Byrne2015-03-2632-89/+89
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* [svn-r26588] Description:Quincey Koziol2015-03-259-119/+3
| | | | | | | | | | | | | Bring r26560 from trunk 1.8 branch: Bring r26483 from autotools_rework branch back to trunk: Remove INTEGER_TO_LDOUBLE_ACCURATE macro/define - we no longer support SGI systems. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (daily tested for 2+ days)
* [svn-r26585] Description:Quincey Koziol2015-03-2510-221/+6
| | | | | | | | | | | | Bring r26495 from trunk to 1.8 branch: Bring r26258 from the autotools_rework branch to the trunk - remove the LDOUBLE_TO_INTEGER_WORKS macro/define, which was addressing issues with SGI systems that are no longer supported. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel (daily tested on trunk for >1 week)
* [svn-r26582] Merge r26509 from trunkJerome Soumagne2015-03-2541-157/+5
| | | | Run reconfigure after merges from autotools_rework branch
* [svn-r26581] Merge r26526 from trunkJerome Soumagne2015-03-254-12/+12
| | | | | | Remove SETX variable from Makefile.am/Makefile.in Part of: HDFFV-9164
* [svn-r26580] Merge r26507 from trunkJerome Soumagne2015-03-251-42/+0
| | | | | | Remove DYNAMIC_DIRS variable from configure.ac Does not seem to be used anymore
* [svn-r26579] Merge r26506 from trunkJerome Soumagne2015-03-251-8/+0
| | | | Remove GNU make check from configure.ac
* [svn-r26578] Merge r26505 from trunkJerome Soumagne2015-03-258-279/+7
| | | | | | | Remove DEFAULT_LIBS from configure.ac and irix6.x config file which was using it. Remove references to IRIX/irix* platform.
* [svn-r26577] Merge r26504 from trunkJerome Soumagne2015-03-251-1/+1
| | | | Fix heading info in configure.ac
* [svn-r26576] Merged r26321,r26405,r26417 from the trunk into the branch.Scot Breitenfeld2015-03-2542-1275/+1248
| | | | Tested: h5committest
* [svn-r26574] Added new C lib. changes -- MSBScot Breitenfeld2015-03-251-0/+10
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* [svn-r26573] merge 24270 from trunk, introducing NORETURN.Mohamad Chaarawi2015-03-253-2/+5
| | | | tested with h5committest.
* [svn-r26561] Description:Quincey Koziol2015-03-247-77/+8
| | | | | | | | | | | | Bring r26491 from trunk to 1.8 branch: Bring r26257 from autotools_rework branch back to the trunk - removes the LDOUBLE_TO_INTEGER_ACCURATE macro/define, which was addressing problems with SGI systems and is no longer supported. Tested on: Linux/32 2.6.18 (jam) w/serial & parallel Daily tested on branch for >2 weeks.
* [svn-r26556] Merge the fix for HDFFV-9173 from trunk to 1_8:Vailin Choi2015-03-243-0/+20
| | | | | | H5Pset_istore_k() will validate the "ik" value to not exceed the max v1 btree entries (2 bytes) The same check for H5Pset_sym_k() "ik" value. h5committested.
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