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* [svn-r22397] Merge trunk changes for HDFFV-7999 and h5dump test script to branchAllen Byrne2012-05-2317-263/+884
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* [svn-r22394] I forgot to close a few datatypes in test_str_create. I fixed ↵Raymond Lu2012-05-231-0/+5
| | | | | | them in this commit. Tested on jam - very simple change.
* [svn-r22383] Snapshot version 1.8 release 10 (snap0)HDF Tester2012-05-217-22/+22
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* [svn-r22379] make the file and memory MPI datatypes as default properties in theMohamad Chaarawi2012-05-184-59/+26
| | | | | DXPL so that we don't have to insert and remove them everytime we perform collective I/O.
* [svn-r22376] add a test to expose a memory leak when adding/removing the ↵Mohamad Chaarawi2012-05-183-2/+49
| | | | | | same property in property list multiple times. fix that bug.
* [svn-r22374] Purpose: Jonathan Kim2012-05-161-5/+10
| | | | | | | | | | | | | Fix h5repacktst (test file generating binary) to address HDFFV-8016 h5repacktst failed in AIX 32bit mode Description: Segmentation fault occurred when h5repacktst try to generate a dataset when system memory is limited to 256MB. Add error handling to display apporiate message to exit and adjust the test dataset according to the original size which didn't causing out of memory. Tested: test was done by limit memory in csh. jam (linux32-LE), ostrich (linuxppc64-BE)
* [svn-r22370] Fix for HDFFV-7697Dana Robinson2012-05-151-1/+1
| | | | | | Minor change to error message text in H5R.c. Minor change: tested on jam
* [svn-r22367] change file name caseAllen Byrne2012-05-141-1/+1
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* [svn-r22365] Added libsettings file to packagingAllen Byrne2012-05-141-0/+5
| | | | Tested: local linux
* [svn-r22363] correct name of text fileAllen Byrne2012-05-141-1/+1
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* [svn-r22362] Update to 1.8.9 releaseAllen Byrne2012-05-143-1770/+10
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* [svn-r22359] Change library source properties: remove "LANGUAGE C" property ↵Allen Byrne2012-05-142-5/+8
| | | | | | from headers. Add "LINKER C" property to link. Tested: local linux
* [svn-r22355] Correct the windows references in the configurations tested sectionAllen Byrne2012-05-111-12/+8
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* [svn-r22345] replace C++ style commentsAllen Byrne2012-05-071-1/+1
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* [svn-r22339] config/examples.amLarry Knox2012-05-027-0/+64
| | | | | | | Added code to install README in share/hdf5_examples Set permissions on README file to rw-r--r--. Tested with h5committest, make install and make uninstall.
* [svn-r22335] Fixed manifest from last docs check-in.Dana Robinson2012-05-021-5/+3
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* [svn-r22333] Removed install instructions for unsupported Visual Studio ↵Dana Robinson2012-05-022-20/+0
| | | | versions.
* [svn-r22329] Add examples/README file to be installed with examples.Larry Knox2012-05-015-3/+22
| | | | | | It was in hdf5 v1.8.8, but not checked into the 1.8 branch. :Text file only, but tested with h5committest.
* [svn-r22325] Description:Quincey Koziol2012-04-291-1/+1
| | | | | | | | | | Bring r22324 from trunk to 1.8 branch: Change name of MPE log file produced from "cpilog" (which was the name used in the example code we were referencing) to "h5log". Tested on: None, too trivial, eyeballed only...
* [svn-r22322] Description:Jonathan Kim2012-04-271-2/+3
| | | | | | | | | | The ph5diff (parallel h5diff) can intermittently hang in parallel mode when comparing the two HDF5 files that contains common name objects with different object types. (HDFFV-8003) Skip only the specific test for parallel until the fix has made. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE)
* [svn-r22320] Purpose:Jonathan Kim2012-04-2715-7/+129
| | | | | | | | | | | | | | | Fix for HDFFV-7998-h5diff: incorrect behavior and output for comparing symbolic dangling links without following-symlinks option Description: Fix not to check and display dangling link status without --follow-symlinks option. Berfor the fix, when comparing symbolic link to symbolic link without follow-symlinks option, h5diff followed to check if those links are dangling or not. It caused to display output incorrectly (dangling link instead of symbolic link). The fix also improved performance when comparing lots of symbolic links without the --follow-symlinks option. Test cases were added and tagged with jira#. This merged from HDF5 trunk r22319. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), cmake (jam)
* [svn-r22313] Description:Quincey Koziol2012-04-231-0/+1
| | | | | | | | | | Bring r22312 from trunk to 1.8 branch: Correct error reported by user (Martin Otte) where we weren't using realloc'ed buffer in MPI datatype code. Tested on: Mac OSX/64 10.7.3 (amazon) w/parallel
* [svn-r22309] Fixed a typoDana Robinson2012-04-201-1/+1
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* [svn-r22307] Removed references to ancient platforms and compilers from the ↵Dana Robinson2012-04-201-82/+15
| | | | INSTALL document.
* [svn-r22301] Purpose:Jonathan Kim2012-04-191-0/+3
| | | | | | | | | | | | Fix for HDFFV-8001 - h5unjam: segfault when used -V (show version) option Description: h5unjam has an option '-V' to display version information. "h5unjam -V" caused segfulat for 1.8.9 pre-release. Merged from HDF5 trunk 22300 Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22291] Description:Quincey Koziol2012-04-1747-2693/+2724
| | | | | | | | | | Bring r22287 from trunk to 1.8 branch: Clean up more FUNC_ENTER/FUNC_LEAVE macros and move H5D & H5T code toward the final design (as exemplified by the H5EA & H5FA code). Tested on: Mac OSX/64 10.7.3 (amazon) w/debug & parallel
* [svn-r22282] Issue 7934 - The data sieve buffer size was for all the ↵Raymond Lu2012-04-123-9/+34
| | | | | | | | | | | | datasets in the file. It could waste memory if any dataset size is smaller than the sieve buffer size. Now the library picks the smaller one between the dataset size and the sieve buffer size from the file access property. (There is no change to hl/ and fortran/ directories. They were property changes during the merge from the trunk) Tested on jam, koala, and ostrich.
* [svn-r22281] Purpose:Jonathan Kim2012-04-1110-23/+233
| | | | | | | | | | | | | Fix for HDFFV-7993 - h5repack fails with error "chunk size must be <= maximum dimension size for fixed-sized dimensions" Description: Fixed a failure when change the chunk size of a specified chunked dataset with unlimited max dims. Also took care of converting to contiguous and compact from the dataset. Test cases were added and tagged with jira#. Merged from HDF5 trunk r22277. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22275] Clear up examples vs applications instances and add minimum file.Allen Byrne2012-04-111-15/+36
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* [svn-r22269] - Clear out RELEASE.txt ahead of 1.8.10 changesMike McGreevy2012-04-092-154/+35
| | | | | | - Update version references in RELEASE.txt - Add reminder to HISTORY-1_8.txt that it needs the completed RELEASE.txt from the 1.8.9 branch when it's done
* [svn-r22268] Update 1.8 branch version to 1.8.10-snap0Mike McGreevy2012-04-0914-31/+31
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* [svn-r22264] Use correct index for inserting null terminatorAllen Byrne2012-04-091-9/+9
| | | | Tested: windows under debug
* [svn-r22262] Update version number in examplesAllen Byrne2012-04-091-4/+4
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* [svn-r22261] Update list of CMake optionsAllen Byrne2012-04-091-45/+62
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* [svn-r22259] Snapshot version 1.8 release 9 (snap16)HDF Tester2012-04-097-23/+23
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* [svn-r22256] Added note for 1.8.9: Autotools configure problem and cmake optionsAllen Byrne2012-04-061-2/+8
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* [svn-r22252] Fixed a bug in H5Ocopy(): When copying an opened object, call ↵Vailin Choi2012-04-0510-12/+407
| | | | | | | | | | | | | | | | | | | | | the object's flush class action to ensure that cached data is flushed so that H5Ocopy will get the correct data. (HDFFV-7853) this line, and those below, will be ignored-- _M . M test/objcopy.c M src/H5Ocopy.c M src/H5Goh.c M src/H5Dint.c M src/H5Opkg.h M src/H5Doh.c M src/H5Toh.c M src/H5O.c M src/H5Dpkg.h M release_docs/RELEASE.txt _M fortran
* [svn-r22248] Added new files and tests to CMakeLists.txtAllen Byrne2012-04-043-7/+68
| | | | Tested: local linux
* [svn-r22245] Description:Quincey Koziol2012-04-031-3/+3
| | | | | | | | | | | Bring r22244 from trunk to 1.8 branch: Correct use of deprecated API routines in test routine. Tested on: Linux/PPC 2.6 (ostrich) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-ia64 2.6 (ember) w/Intel compilers, w/C++ & FORTRAN, parallel, in production mode
* [svn-r22239] Description:Quincey Koziol2012-04-0212-164/+610
| | | | | | | | | | | | | | | | | | | Bring r22233 from trunk to 1.8 branch: Correct several errors in fractal heap code: root indirect block was getting pinned/protected more than once, "single" free space sections weren't getting "re-parented" correctly when the heap transitioned between having a root indirect block and a root direct block, and several related issues. Also cleaned up some warnings in library/tests. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Mac OSX/64 10.7.3 (amazon) w/debug
* [svn-r22237] Description:Quincey Koziol2012-04-021-1/+1
| | | | | | | Switch 'snprintf' -> 'HDsnprintf' Tested on: (eyeballed only, very simple)
* [svn-r22234] Snapshot version 1.8 release 9 (snap15)HDF Tester2012-04-027-22/+22
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* [svn-r22232] Description:Quincey Koziol2012-04-011-1/+1
| | | | Fix another typo in MANIFEST
* [svn-r22231] Description:Quincey Koziol2012-04-012-0/+3
| | | | | | | | | | | | | | | Bring r22229 from trunk to 1.8 branch: Add 'H5O_mcdt_search_cb_t' to bin/trace script and re-run the bin/reconfigure script. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode
* [svn-r22230] Description:Quincey Koziol2012-04-011-0/+1
| | | | Correct typo in MANIFEST file
* [svn-r22228] Description:Quincey Koziol2012-04-0145-340/+4269
| | | | | | | | | Bring r22219 from trunk to 1.8 branch: (with release manager's blessing) Merge "file image" changes from feature branch back to trunk. Tested on: h5committested
* [svn-r22225] Description:Quincey Koziol2012-04-012-8/+33
| | | | | | | | | | | | Bring r22220, r22221 & r22224 from trunk to 1.8 branch: improved h5repack metadata block size testing, and some code cleanups. Tested on: FreeBSD/32 8.2 (loyalty) w/gcc4.6, w/C++ & FORTRAN, in debug mode FreeBSD/64 8.2 (freedom) w/gcc4.6, w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (koala) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode
* [svn-r22223] Description:Quincey Koziol2012-04-011-1/+75
| | | | | | | Update GCC compiler flags for new 4.7.0 release. Tested on: Mac OSX/64 10.7.3 (amazon) w/gcc 4.7.0
* [svn-r22217] Description:Quincey Koziol2012-03-311-0/+5
| | | | Added note about new '-S' option to h5stat and '-M' option to h5repack.
* [svn-r22216] Description:Quincey Koziol2012-03-316-86/+124
| | | | | | | | | | | | | Bring r22180, r22181 and r22214 from trunk to 1.8 branch: Add new "metadata block size" command line option ('-M <x>' or '--metadata_block_size=<x>') for h5repack. [With release managers blessing] Tested on: Mac OSX/64 10.7.3 (amazon) w/debug) (h5committest upcoming)
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