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* [svn-r12704] Purpose: Bug fixLeon Arber2006-10-022-15/+28
| | | | | Description: Fix copper failures by adding MPI_Finalize call and also close the dataset and file in case of failure prior to exiting.
* [svn-r12703] Using int64_t in H5Lpublic.h caused errors on Windows, where ↵James Laird2006-10-022-16/+21
| | | | | | | | | | | | int64_t is only defined in H5private.h. Moved definition of int64_t from H5private.h to H5public.h as a temporary solution. Tested on heping and Windows (windows also needed H5Gdense.c and H5Gbtree2.c to be added to hdf5 project).
* [svn-r12702] Description:Quincey Koziol2006-10-023-61/+117
| | | | | | | | | | | | | | | | | Add test to fractal heaps to exercise issues with opening the same heap through two different file handles. Fix issues with file handle contexts in metadata cache callbacks for heap components. Fix bug in file close handling where cached information was being invalidated even when another file handle was open to the file. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/64 2.4 (mir) w/1.6 compat Linux/32 2.4 (heping) w/FORTRAN & C++ Mac OSX/32 10.4.8 (amazon)
* [svn-r12701] Description:Quincey Koziol2006-10-022-55/+46
| | | | | | | | Clean up formatting/whitespace Tested on: Mac OSX/32 10.4.8 (amazon) Too minor to require full h5committest
* [svn-r12700] Alert:Quincey Koziol2006-10-02113-6231/+8510
| | | | | | | | | | | | | | | | | | | | | | | | | | | | File format is not stable, don't keep files produced! Description: First stage of checkins modifying the format of groups to support creation order. Implement "dense" storage for links in groups. Try to clarify some of the symbols for the H5L API. Add the H5Pset_latest_format() flag for FAPLs, to choose to use the newest file format options (including "dense" link storage in groups) Add the H5Pset_track_creation_order() flag for GCPLs, to enable creation order tracking in groups (although no index on creation order yet). Remove --enable-group-revision configure flag, as file format issues are now handled in a backwardly/forwardly compatible way. Clean up lots of compiler warnings and other minor formatting issues. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/enable-v1.6 compa Mac OSX/32 10.4.8 (amazon) AIX 5.3 (copper) w/parallel & FORTRAN
* [svn-r12699] Description:Quincey Koziol2006-10-023-66/+122
| | | | | | | | | | | Fix problems with opening a fractal heap multiple times, from different file handles. Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) w/FORTRAN & C++ Linux/64 2.4 (mir) w/enable-v1.6 Mac OS/32 10.4.8 (amazon)
* [svn-r12698] Updated to include t_pflush tests.Leon Arber2006-10-011-0/+2
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* [svn-r12697] Purpose: New FeatureLeon Arber2006-10-014-7/+402
| | | | | | | | Description: Preliminary test of H5Fflush to verify that it still works when using MPIO collective mode. Platforms: Linux (heping)
* [svn-r12696] Purpose: Add FeatureLeon Arber2006-09-292-82/+174
| | | | | | | | Description: Add a second test case to the serial flush tests. This tests the case when the file is not flushed out to disk and verifies that it fails as expected. Platforms: Linux (heping)
* [svn-r12695] Added --enable-debug=all to the list of known problems in ↵James Laird2006-09-291-0/+4
| | | | RELEASE.txt.
* [svn-r12694] Fixed a couple of typos in the comment block for H5Oincr_refcount.James Laird2006-09-291-2/+2
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* [svn-r12693] Changed return values of H5O*_refcount functions to be herr_t ↵James Laird2006-09-291-7/+9
| | | | | | | | instead of int. Mostly cosmetic change. Testing on mir.
* [svn-r12692] Removed code that was used to support lazy allocation of file spaceJames Laird2006-09-284-89/+2
| | | | | | | since HDF5 no longer allocates file space lazily. Tested on mir; should be only a cleanup, since the code isn't called from anywhere.
* [svn-r12691] Fix two minor bugs at batch files that include testing ↵MuQun Yang2006-09-272-3/+10
| | | | | | h5jam/h5unjam. MSVS 6.0 C/C++
* [svn-r12690] h5test.h and libtest.a are needed for high level test projects. ↵MuQun Yang2006-09-2712-82/+94
| | | | | | Windows projects need to be updated. Test with MSVS 6.0
* [svn-r12689] Added bin/gcov_script to the MANIFESTJames Laird2006-09-271-0/+1
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* [svn-r12688] Added a script to generate code coverage information. To ↵James Laird2006-09-261-0/+52
| | | | | | | | | create files that record how often each line of HDF5 source was run, check out a fresh copy of hdf5 and run "bin/gcov_script" . No changes to the code.
* [svn-r12687] reverted back some changes that inadvertedely added some ↵Pedro Vicente Nunes2006-09-2650-236/+182
| | | | | | | | output to the parallel part of h5diff tested : heping parallel
* [svn-r12686] Added compression to Packet Tables. Now both C and C++ packet ↵James Laird2006-09-2616-90/+274
| | | | | | | | | | | | | | | | tables have an extra parameter that sets the deflate filter. Added tests, made examples use the new APIs. Cleaned up include files a little and removed some casts that I hope are superfluous. If anybody encounters strange errors in the packet table tests where the chunk size is set to some extremely large value, please let me know, but I was unable to reproduce this error on any system. Tested on mir, heping, sol, juniper, VS 6.0. Looked for the chunk size error on several other systems a month or two ago.
* [svn-r12685] added a new binary file for h5dump testfilesPedro Vicente Nunes2006-09-261-0/+1
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* [svn-r12684] Pedro Vicente Nunes2006-09-262-2/+2
| | | | corrected usage message to have an example of the new binary parameters
* [svn-r12683] Pedro Vicente Nunes2006-09-2610-62/+116
| | | | | | | | | | | | | | | | | | revised binary flags, added a new file to the test generator program to be used in the binary tests usage is now -o F, --output=F Output raw data into file F -b F, --binary=F Binary output, of form F (into file -o F). Recommended usage is with --dataset=P Form F of binary output is: MEMORY for memory type, FILE for the disk file type, LE or BE for pre-existing little or big endian types example ./h5dump -d integer -b MEMORY -o out.bin tbinary.h5
* [svn-r12682] Description:Quincey Koziol2006-09-261-1/+1
| | | | | | | Make Windows64 compiler happy by initializing variable... :-) Tested on: None - just eyeballed (very minor)
* [svn-r12681] Description:Quincey Koziol2006-09-261-178/+180
| | | | | | | Encode/decode object references in portable way. Tested on: Solaris/64 2.9 (shanti)
* [svn-r12680] Description:Quincey Koziol2006-09-2526-1597/+2386
| | | | | | | | | Review, revise & checkin in Peter's latest round of object copy changes, which add basic support for datasets & attributes with reference datatypes. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12678] bug fixPedro Vicente Nunes2006-09-2550-182/+236
| | | | | the number of atribute differences was not added to the total sum of differences
* [svn-r12676] Adding jamtest.bat line for windows.MuQun Yang2006-09-201-0/+1
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* [svn-r12675] Pedro Vicente Nunes2006-09-201-8/+13
| | | | | added a new output file for the case of missing file name, conforming to the new usage message
* [svn-r12674] Add a batch file to test the validation of h5jam/h5unjam tool. ↵MuQun Yang2006-09-192-2/+92
| | | | The correctedness test is much harder to be implemented by using batch script on windows. Will handle this later.
* [svn-r12673] Pedro Vicente Nunes2006-09-191-8/+18
| | | | | | | added long names for parameter switches that did not have them, reformated usage message tested: heping
* [svn-r12672] Purpose: Updating C++ examplesBinh-Minh Ribler2006-09-194-552/+642
| | | | | | | | | | Description: Updated existing C++ examples to be similar to C examples. Platforms tested Linux 2.4 (heping) SunOS 5.9 (shanti) AIX 5.1 (copper)
* [svn-r12671] Pedro Vicente Nunes2006-09-186-17/+158
| | | | | | | added a test file generator program for h5copy, modified test script to use that file, added binary file to repo tested on heping, shanti
* [svn-r12670] Snapshot version 1.8 release 0 (alpha5)HDF Admin2006-09-165-16/+16
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* [svn-r12669] Description:Quincey Koziol2006-09-155-10/+67
| | | | | | | | Use a slightly less efficient method of computing the log2() on SGI IRIX64, in order to avoid a compiler bug when optimizations are turned on. Tested on: SGI IRIX64 6.5 (atlantia)
* [svn-r12668] Description:Quincey Koziol2006-09-1520-71/+74
| | | | | | | Re-run 'bin/reconfigure' script after recent checkins Tested on: none - shouldn't have any affect on compilation
* [svn-r12667] This is VMS maintenance for alpha5 release.Elena Pourmal2006-09-151-5/+5
| | | | Commented out fheap test until we have a chance to work on the failures.
* [svn-r12666] Description:Quincey Koziol2006-09-141-1/+1
| | | | | | | Initialize local variable that is causing compiler problems on Windows/64 Tested on: None - too trivial
* [svn-r12665] Pedro Vicente Nunes2006-09-131-3/+5
| | | | added comments
* [svn-r12664] Pedro Vicente Nunes2006-09-131-17/+72
| | | | | modified the h5copy test script so that it calls h5diff to check the copied file/object
* [svn-r12663] Description:Quincey Koziol2006-09-121-43/+29
| | | | | | | | | Don't protect direct block when removing object from managed heap blocks - all the information we need is available without the extra I/O. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12662] Description:Quincey Koziol2006-09-123-21/+17
| | | | | | | | Whitespace/formatting/compiler warning cleanup. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12661] Description:Quincey Koziol2006-09-123-10/+213
| | | | | | | | | | | Add 'loookup3' checksum routine and switch to using it for metadata checksums - it's just as "strong" as the CRC32 and about 40% faster in general (with some compiler optimizations, it's nearly as fast as the fletcher-32 algorithm). Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12660] More revision for the h5repack batch file for with and without ↵MuQun Yang2006-09-121-19/+20
| | | | gzip/szlib compression filters
* [svn-r12659] This is VMS maintenance check-in.Elena Pourmal2006-09-112-1/+8
| | | | | | | | | | | Some of the tests cannot be run on VMS since they try to open the same file twice. Solution: Bypass the tests according to the H5_CANNOT_OPEN_TWICE variable setting. Platforms tested: VMS server and heping.
* [svn-r12658] There was a bug in the repacktest.BAT on windows.MuQun Yang2006-09-111-3/+49
| | | | | | If either szip or zlib filter was not present, the batch still tried to use h5repack tool to test the data compression feature. Therefore the h5repack test failed. Fixed the bug. Now if the compression filter is not present, that particular repack test will be skipped.
* [svn-r12657] Description:Quincey Koziol2006-09-112-27/+26
| | | | | | | | | Clean up whitespace/formatting. Tested on: Mac OS/PPC 10.4 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12656] Description:Quincey Koziol2006-09-115-53/+156
| | | | | | | | | | | | | | | Add "use the latest version of the file format" flag to the file access property list and internal file data structures. Fix bug where metadata block size was retrieved instead of the small data block size. Categorize property list routine prototypes in the public header file. Tested on: Mac OS/PPC 10.4 (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12655] Description:Quincey Koziol2006-09-1112-907/+1348
| | | | | | | | | | | | Add "op" routine to perform operation on heap object "in situ", to allow for faster operations on dense links during B-tree traversal & lookup. Refactor the "read" routine to use the internal version of the "op" routine, to keep the code duplication as low as possible. Tested on: Mac OS X.4/PPC (amazon) Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12651] Description:Quincey Koziol2006-09-065-71/+80
| | | | | | | | Clean up compiler warnings. Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12650] Description:Elena Pourmal2006-09-055-13/+60
| | | | | | | | | Purify found some memory leaks in the code related to the HDF5 external links. James provided the fix and asked me to check it in. Tested: heping, mir, shanti, and juniper
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