| Commit message (Collapse) | Author | Age | Files | Lines |
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Bring r18505 from trunk to 1.8 branch:
Move code to free superblock data structure into separate routine, in
preparation for upcoming metadata journaling -> trunk merging.
Tested on:
FreeBD/32 6.3 (duty) w/debug
(h5committested on trunk)
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Bring r18502 from trunk to 1.8 branch:
Bring r18501 from metadata journaling "merging" branch to trunk:
Extract data structure 'destroy' routines from metadata cache client
'destroy' callbacks.
Tested on:
FreeBSD/32 6.3 (duty) w/debug
(h5committested on trunk)
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Bring r18498 from trunk to 1.8 branch:
Bring r18497 from metadata journaling "merging" branch to trunk:
Extract data structure 'destroy' routines from metadata cache client
'destroy' callbacks.
Tested on:
FreeBSD/32 6.3 (duty) w/debug
(h5committested on trunk)
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Bring r18494 from trunk to 1.8 branch:
Bring r18491 from metadata journaling "merging" branch to trunk:
Extract data structure 'destroy' routines from metadata cache client
'destroy' callbacks.
Tested on:
FreeBSD/32 6.3 (duty) w/debug
(h5committested on trunk)
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Testlibinfo.sh failed again.
Solution:
Removed the const from H5libhdf5_settings definition, again.
Revamp the whole setting so that H5lib_settings.c is compiled
individually, just like H5Tinit.c. Hope this will take care
of the problem once for all.
Tested:
Amani using --disable-shared with --enable and --disable-embedded-libinfo.
Will test this on the AIX platform after commit (cannot run bin/reconfigure
in the AIX platform and it is too clumsy to try to ssh files back and forth
and incurred "svn merge inconsistency" later too.
Pretty confident this fix should work in all other platforms.
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Bring r18484 from trunk to 1.8 branch:
Bring r18483 from metadata journaling 'merging' branch to trunk:
Remove unused symbol table entry dirty flag
Tested on:
FreeBSD/32 6.3 (duty) w/debug
(h5committested on trunk)
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recent changes to the embedded library generation code does not quite work
for the AIX system. The strings command of AIX does not display the embedded
library information be default.
Solution:
Changed the H5libhhdf5_setting[] to be an extern variable. Also removed the
const qualifier so that strings can see the variable data.
Tested:
Blue-print (with embedded-libinfo enabled and disabled).
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Bring r18460 from trunk to 1.8 branch:
Fold metadata journaling changes into the trunk: mostly tweaky
small stuff, also removed the H5F_t* field from the H5G_entry_t struct.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
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Fix for the bug1726 - NPOESS: h5repack loses attributes for datasets of
type H5T_REFERENCE.
Description:
Merged from hdf5 trunk rXXX
Tested:
jam
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Resolve build issue on Sloaris due to white space from the previous
checkin r18448
Tested:
jam
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Bug1727 - NPOESS: h5copy should copy region references
Description:
Merged from hdf5 trunk r18447.
Tested and added test cases from previous checkin r18321
Reference Manual and tool's usage section for '-f ref' option is updated
for more comprehensibility.
Tested:
jam
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Description:
Modified algorithm for extending a dataset with early allocation so it only
deals with the new chunks. Formerly, it would loop over all chunks, checking
to see if each existed in cache and on disk, causing major performance issues
with large numbers of chunks.
Tested: jam, linew, amani (h5committest)
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Resolve windows build issue from previous checkin r18427
Description:
The previous checkin was for bug1814 - NPOESS: h5repack doesn't handle
references to the groups as an element of a dataset
Tested:
jam
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the make file accordingly.
Not tested yet.
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Fix for bug1814 - NPOESS: h5repack doesn't handle references to the groups
as an element of a dataset
Description:
Merged from hdf5 trunk r18425
handles object reference to named-datatype as well.
Add test cases.
Tested:
jam
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Changed batch files by removing VS2005 and IVF91 options.
Added libsettings project to behave like h5tinit.vcproj.
Updated Manifest
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files
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Bring r18413:18420 from trunk to 1.8 branch:
- unify srcdir query, etc.
- Move libhdf5.settings string out of H5Tinit.c
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
Mac OS X/32 10.6.2 (amazon) in debug mode
Mac OS X/32 10.6.2 (amazon) w/C++ & FORTRAN, w/threadsafe,
in production mode
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No test needed since it is in a message string.
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Removed header file testhdf5.h from C++ tests to eliminate a non-standard
problem on OpenVMS. It wasn't essential.
Also, moved dsets.cpp from a standalone program into testhdf5.cpp
to be consistent with the rest of the tests.
Platforms tested:
Linux/32 2.6 (jam)
FreeBSD/64 6.3 (liberty)
SunOS 5.10 (linew)
Will ask Ray to test on OpenVMS.
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Update copyright date to 2010.
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add test cases for h5copy - copy external links with/without ‘–f ext’
option (relate to bug 1733)
Description:
merged from hdf5 trunk (r18398 and r18399)
Tested:
jam
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Description:
The core file driver previously matched files only based on the name used to
open them, even when a backing store is used. This caused problems in the
failing test when it traversed an external link to itself, and did not recognize
that it was the same file. Similar tests in links.c were skipped when the core
file driver was used. The failure was previously masked by inappropriate file
flushes caused by external link traversal. Added code to the core file driver
to keep track of low level file information of the backings store to allow for
accurate recognition of duplicate files. Also re-enabled all links.c tests for
the core file driver.
Tested: Fedora (core and sec2 drivers; no time for full commit test, will
monitor daily tests)
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Bring r18391 from trunk to 1.8 branch:
Clean up compiler warnings, check error values and fix whitespace.
Tested on:
FreeBSD/64 6.3 (duty) w/debug
(too minor to require h5committest)
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Bring r18388 from trunk back to 1.8 branch:
Bring changes from Coverity session from branch into trunk:
r18378:
Fixed coverity issues 207 and 322. Pointer hdr was checked for NULL after being
asserted and dereferenced. Check was removed.
r18379:
Fix coverity issues # 88 and # 435.
r18380:
Fixed Coverity issue # 85. Added check of returned pointer for NULL before use.
r18381:
Resolve coverity issues # 214 and # 215
r18382:
Issue 131: Add null checks to allocations and check for free in error handling
r18383:
Issue 421:
Reorganized code to make intention clearer. Also, set local variable fl to NULL
after transfer to tail. Heap->freelist will take care of all allocations
r18384:
Coverity #249 and #250 - STRING_ATT_CHECK wasn't allocated before being used
and freed in function test_write_vl_string_attribute and
test_read_vl_string_attribute.
Tested on:
Mac OS X/32 10.6.2 (amazon) w/debug & prod
(h5committested in daily tests)
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Bring r18385 from trunk to 1.8 branch:
Tweak fix in r18372 to reset other messages read in also.
Tested on:
Mac OS X/32 10.6.2 (amazon) w/debug & production
(too minor to require h5committest)
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Description:
Support for expanding external links was not implemented in H5Ocopy, even though
a flag existed for H5Pset_copy_object to enable this. This patch implements
this feature.
Tested: jam, amani, linew (h5committest); Fedora
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Description:
Previously, the library would reopen the source file when traversing an external
link if unable to find the target file otherwise. This has been corrected.
Also moved the call to H5F_flush from H5F_try_close to H5F_dest, so the file is
only flushed when the last identifier for the file is closed. This prevernts
situations where the library could attempt to flush a file with protected
metadata.
Tested: jam, amani, linew (h5committest); Fedora
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H5D_chunk_bh_info to free the
PLINE structure in the function H5O_dset_bh_info. This is to prevent memory leak.
Tested on jam with valgrind - simple fix.
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I just broke the link command
into 3 commands to make it happy.
Tested on OpenVMS.
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Bring r18357 from trunk to 1.8 branch:
Bring r18356 from metadata journaling merge branch to trunk:
Converge metadata journaling branch with trunk with a bunch of v1 B-tree
changes:
- Remove H5ACprivate.h header from H5Bprivate.h header
- Revise v1 B-tree client callbacks
- Get rid of H5B_serialize() by bringing it into H5B_flush()
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
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Bring r18352 from trunk to 1.8 branch:
Make parallel I/O metadata cache operations obey the "evictions
enabled" flag in the cache.
Tested on:
FreeBSD/32 6.3 (duty) in debug mode
FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode
Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x,
w/C++ & FORTRAN, w/threadsafe, in debug mode
Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x,
w/C++ & FORTRAN, in production mode
Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN,
w/szip filter, in production mode
Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN,
in production mode
Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode
Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
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Bring r18346 from trunk to 1.8 branch:
Bring Coverity fixes back from branch to trunk:
r18336:
Fix coverity issues 275, 276, 277, 323, 432, 433, and 434
r18337:
Fix Coverity issue #106: release free space section node on error
r18338:
Fixed Coverity #94 - In H5P_register, new_class wasn't closed when there's an
error after it's created.
r18339:
Fix Coverity #185 - In test_conv_str_1, BUF wasn't freed when there's an error
in this function.
r18340:
Correct error in r18337 that wasn't releasing indirect fractal heap block
early enough.
r18341:
Close nodes if any failed in the middle of allocating new nodes. Coverity 140
and 141
r18342:
Correct [another] problem w/r18337.
r18343:
Fix coverity items 185, 20, and 21.
r18344:
Fix Coverity 213 - In H5FD_family_close, the double pointer file->memb was
dereferenced without NULL checking
(We believe).
r18345:
Fix Coverity issue # 210; removed NULL check after pointer dereferenced in
H5HFdblock.c. Also assigned NULL to pointer in H5Pint.c to fix segmentation
fault.
Tested on:
FreeBSD/32 6.3 (duty) w/debug)
(h5committested on trunk)
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Update to use H5Gcreate2 instead of H5Gcreate.
Remove mis-used type related code.
Tested:
jam, amani and linew
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Fix to handle $srcdir for nightly test as well as local testing
Merged from hdf5 18329.
Tested:
jam, amani and linew
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following C test under hdf5/test
directory. OpenVMS couldn't open a file through symbolic link. This macro is mainly used
in test/links.c for the function call external_symlink and in src/H5F.c.
Tested on OpenVMS.
------------------------------------------------------------------------
#include <stdio.h>
#include <unistd.h>
#include <sys/types.h>
#include <sys/stat.h>
#include <fcntl.h>
#include <errno.h>
int main(void)
{
int file1, file2;
/* Create a symbolic link to the file 21b.c */
if(symlink("[LU.hdf5_1_8_2_5.test.tmp2]21b.c", "[LU.hdf5_1_8_2_5.test.tmp]sym1") < 0)
printf("symlink failed\n");
/* Create the file 21b.c */
if((file1 = open("[LU.hdf5_1_8_2_5.test.tmp2]21b.c", O_CREAT | O_TRUNC | O_RDWR)) < 0)
printf("1st open failed\n");
if(close(file1) < 0)
printf("close failed\n");
/* Open the 21b.c through the symbolic link */
if((file2 = open("[LU.hdf5_1_8_2_5.test.tmp]sym1", O_RDWR)) < 0) {
int errsv = errno;
printf("2nd open failed, errno=%d\n", errsv);
}
if(close(file2) < 0)
printf("close failed\n");
return 0;
}
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Tested: windows
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Tested: windows
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Bug1727 - h5copy: add test cases for object and region references
Note:
merged from hdf5 trunk 18319 and 18320
File added:
tools/h5copy/testfiles/h5copy_ref.out.ls
tools/h5copy/testfiles/h5copy_ref.h5
Tested:
jam
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629 file exit code
Tested: windows
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move data1,data2 array declaration on top of each functions for
Windows build
Tested on Jam
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Added information to the release notes for fixing Bz#1755.
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