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* [svn-r20369] Purpose:Jonathan Kim2011-03-2927-131/+169
| | | | | | | | | | | | | | | | | Fixed Bug 2184 - GMQS: h5diff - incorrect calculation code for --use-system-epsilon option Description: Fixed h5diff for --use-system-epsilon option: the calculation changed from ( |a - b| / b ) to ( |a - b| ). This was decided for better performance and was corrected only in HDF5 trunk, so 1.8 got updated. Also comments for equal_XXX() function were updated correctly. Also help page and RM got updated correctly. Also add test cases for testing the differences w/wo the option. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE)
* [svn-r20367] Added BZ1725 reference corresponding to r20365Allen Byrne2011-03-291-0/+6
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* [svn-r20365] BZ1725: H5DUMP displays type of reference for H5T_REFERENCEAllen Byrne2011-03-295-18/+15
| | | | bring r20349 from trunk
* [svn-r20364] Updated commands to properly clear generated filesAllen Byrne2011-03-292-5/+2
| | | | bring r20363 from trunk
* [svn-r20361] Added missing character in CMake commandAllen Byrne2011-03-291-1/+1
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* [svn-r20352] Update Valgrind ignore listAllen Byrne2011-03-261-0/+17
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* [svn-r20350] Purpose:Jonathan Kim2011-03-2512-11/+114
| | | | | | | | | | | | | | | | Fixed CHICAGO: Bug 2121 - h5diff - incorrect and lack of output for the different set of attributes (different number and names) Description: Merged from HDF5 trunk r20334. This is related to previous checkin r20299. Add help page update for verbose option level feature, which displays useful information about attribute difference with -v1, --verbose=1 -v2 or --verbose=2 option. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE)
* [svn-r20336] Remove unused windows defines. Add _CONSOLE to windows definitions.Allen Byrne2011-03-252-8/+1
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* [svn-r20333] Correct clear-misc filenameAllen Byrne2011-03-251-3/+3
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* [svn-r20331] Adjust H5JAM tests for valgind executionAllen Byrne2011-03-252-14/+46
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* [svn-r20325] Correct depends of test for examples and add clear testAllen Byrne2011-03-241-12/+54
| | | | bring r20324 from trunk
* [svn-r20323] Correct depends of test for CPP examples and add clear testAllen Byrne2011-03-241-4/+25
| | | | bring r20322 from trunk
* [svn-r20321] Correct clear objects for H5MKGRP testsAllen Byrne2011-03-241-0/+9
| | | | bring r20320 from trunk
* [svn-r20319] Correct depends of test for ADD_H5COPY_TESTAllen Byrne2011-03-241-4/+5
| | | | Bring r20318 from trunk
* [svn-r20317] Removed includes which are included with proper config checks ↵Allen Byrne2011-03-241-15/+1
| | | | | | in h5private.h. Tested: local linux, windows
* [svn-r20314] Changed winsock.h guard to sync with trunkAllen Byrne2011-03-241-2/+2
| | | | Tested: windows
* [svn-r20313] Change incorrect use of "struct stat" to use "h5_stat_t". Allen Byrne2011-03-244-58/+68
| | | | | | | Also removed includes from top of file - they are included with proper config checks in h5private.h. Changed name of Windows only gettimeofday function to avoid a define loop according to VS2008 Tested: local linux, windows
* [svn-r20311] Change incorrect use of "struct stat" to use "h5_stat_t". On ↵Allen Byrne2011-03-242-20/+4
| | | | | | windows, this used the wrong structure and caused crashes. Also removed includes from top of file - they are included with proper config checks in h5private.h. Tested: local linux, windows
* [svn-r20307] The TEST_REFERENCE EOL adjustment block needs to be included in ↵Allen Byrne2011-03-241-8/+8
| | | | the SKIP_COMPARE IF block
* [svn-r20306] Add tests to h5import and 80% of h5jamAllen Byrne2011-03-234-467/+642
| | | | Tested: local linux
* [svn-r20301] brought revisions 19868:20300 from the 1.8.6_vms branch to the ↵Raymond Lu2011-03-2315-15/+45
| | | | 1.8 branch
* [svn-r20299] Purpose:Jonathan Kim2011-03-2325-1219/+10562
| | | | | | | | | | | | | | | | | Fixed CHICAGO: Bug 2121 - h5diff - incorrect and lack of output for the different set of attributes (different number and names) Description: Merged from HDF5 trunk r20294 Previously h5diff compared attributes correctly only when two objects have the same number of attributes and attribute names are identical. Also didn't display useful information about attribute difference. This fix covers all other cases. This fixes both issues. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE)
* [svn-r20288] Purpose:Jonathan Kim2011-03-227-71/+150
| | | | | | | | | | | | | | | Fixed Bug 2216 - GMQS: h5diff - memory leak when compares vlen string in dataset or attributes Description: Merged from HDF5 trunk r20266, r20270 and r20285. Test for dataset : valgrind --leak-check=full ./h5diff -v h5diff_dset1.h5 h5diff_dset2.h5 /g1/VLstring Test for attr : valgrind --leak-check=full ./h5diff h5diff_attr1.h5 h5diff_attr2.h5 Both test cases are in testing script. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), Cmake - jam
* [svn-r20286] Purpose:Jonathan Kim2011-03-212-7/+8
| | | | | | | | | | | | | | | | | Fixed Bug 2214 - GMQS: h5diff - memory leak when accessing symbolic links with --follow-symlinks option and the target type is UDLink or some error occurs Description: Merged from HDF5 trunk r20274. Memory leaks occurred when accessing symbolic links with --follow-symlink option. Test cases are in testing script. (400 - 456, 501 - 518) An example test : valgrind --leak-check=full h5diff --follow-symlinks -v h5diff_softlinks.h5 h5diff_softlinks.h5 Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), Cmake - jam
* [svn-r20283] Bring test properties changes from r20282 of trunkAllen Byrne2011-03-192-7/+6
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* [svn-r20279] Description:Jonathan Kim2011-03-183-6/+6
| | | | | | | | | | Merged from HDF5 trunk r20254. In test script, h5ls is used to verify for the result, so change the two tests like others. This is related to the previous checkin SVN r18400. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), cmake (jam)
* [svn-r20268] Corrected expected fail tests for use during valgrindAllen Byrne2011-03-181-25/+6
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* [svn-r20264] Corrected typoAllen Byrne2011-03-161-1/+1
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* [svn-r20263] Merge in lahey project files.Allen Byrne2011-03-16229-12973/+5446
| | | | Tested: windows
* [svn-r20261] In my previous checkin (20256), I used H5Gcreate instead of ↵Raymond Lu2011-03-161-1/+1
| | | | | | H5Gcreate2 in my test. I just corrected it. Tested on jam with v16 API as the default.
* [svn-r20259] Windows compilers insist that variable declarations are before ↵Allen Byrne2011-03-161-5/+5
| | | | | | assignement statements Tested: windows
* [svn-r20258] Corect name of test in test propertyAllen Byrne2011-03-161-1/+1
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* [svn-r20256] Bug 2115 - add H5_VERSION_GE and H5_VERSION_LE macros. I added ↵Raymond Lu2011-03-151-0/+69
| | | | | | a new test case to show how to use them. Tested on jam - simple change.
* [svn-r20253] Test control checks for running with valgrind.Allen Byrne2011-03-154-27/+61
| | | | Bring r20252 from trunk
* [svn-r20248] Change name of new VLEN function from H5Tdetect_vlen_str to ↵Allen Byrne2011-03-144-7/+112
| | | | | | | | | | h5tools_detect_vlen_str to match other functions in tools lib. Added back test for H5Tdetect_class of H5T_VLEN after each instance of above function to catch all VLEN types in h5dump. bring back from trunk r20247 Tested: local linux
* [svn-r20246] Purpose:Jonathan Kim2011-03-147-6/+32
| | | | | | | | | | | Fixed Bug 1904 - h5ls : usage of '-a' option is not clear to display expected output Description: Merged from HDF5 trunk r20231. Fixed incorrect content and improved help page for -a option of h5ls. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), cmake (jam)
* [svn-r20244] Allen Byrne2011-03-141-1/+1
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* [svn-r20242] Corrected an error in the comments for H5Oget_comment(_by_name) ↵Raymond Lu2011-03-142-3/+3
| | | | | | | | and H5G_loc_get_comment_cb: the return value is the size of the comment excluding NULL terminator. No test is needed.
* [svn-r20240] Add HDFGroup to PACKAGE_NAME, as parent folder name for CPack ↵Allen Byrne2011-03-141-1/+1
| | | | installation configuration.
* [svn-r20230] Change MEMCHECK condition for test result from if "1" to if NOT ↵Allen Byrne2011-03-111-2/+2
| | | | "0" to account for type "2" exit codes.
* [svn-r20229] Add tools bin folder to installation variables.Allen Byrne2011-03-101-0/+1
| | | | Bring r20228 from trunk
* [svn-r20227] Entered known problem of --with-mpe does not work with mpich2.Albert Cheng2011-03-101-0/+2
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* [svn-r20225] Add enable-error-stack option to new features-tools section.Allen Byrne2011-03-101-1/+4
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* [svn-r20220] Description:Quincey Koziol2011-03-104-7/+10
| | | | | | | | | | | | | | | | | | | Bring r20219 from trunk to 1.8 branch: Tell the VFL flush call that the file will be closing, allowing the VFDs to avoid sync'ing the file (particularly valuable in parallel). Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, w/threadsafe, in production mode Linux/PPC 2.6 (heiwa) w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode
* [svn-r20215] Added ddl file for testing bug 2183Peter Cao2011-03-091-0/+27
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* [svn-r20214] Fixed bug 2183Peter Cao2011-03-091-9/+9
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* [svn-r20213] fixed bug 2183Peter Cao2011-03-093-0/+10
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* [svn-r20212] Contary to ref man H5O_get_comment does not return null char in ↵Allen Byrne2011-03-091-1/+2
| | | | | | size. Bring r20211 from trunk
* [svn-r20210] Purpose:Jonathan Kim2011-03-095-8/+63
| | | | | | | | | | | | | | Fix Bug 2120 - h5copy: improve to copy an object into same HDF file Description: Merged from HDF5 trunk r20203. Before the fix users can't copy an object (dataset or group) with different name if input file (-i) and output file (-o) is same. This feature would be useful to clone any object with different name and reuse contents. Tested: jam (linux32-LE), amani (linux64-LE), heiwa (linuxppc64-BE), Cmake (jam)
* [svn-r20199] Add expected fail condition to memcheck alternate tests.Allen Byrne2011-03-081-0/+3
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