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* [svn-r17661] Add option to specify version for documentation.Larry Knox2009-10-161-4/+20
| | | | | | Previously added to release in hdfdts, but release script should be part of source code. Tested: jam.
* [svn-r17660] Changed the default fortran compilers from xlf and mpxlf_r toAlbert Cheng2009-10-161-4/+4
| | | | | | | | | | xlf90 and mpxlf90_r respectively. The fortran 90 compilers support free format source files. This allows the removal of -k so that the default compiler command is cleaner. Tested: AIX Up at LLNL. (Note: mpxlf90_r does not work but this could have been an undetected old problem.)
* [svn-r17656] Added h5_make_local_copy function to address bug 1630, and ↵Larry Knox2009-10-156-140/+91
| | | | | | refactored tests that were discovered to copy data files to avoid writing to data files checked into svn to use the new function. Tested on amani, jam, and linew with h5committest and on jam with a read only mount of source files on pegdub.
* [svn-r17655] Purpose:Mike McGreevy2009-10-1510-88/+88
| | | | | | | | | | | | Configure cache-val cleanup Description: Corrected some misnamed cache values in configure / config files. Tested: h5committest
* [svn-r17652] Maintenance: fixed a silly typo.Elena Pourmal2009-10-151-1/+1
| | | | platforms tested: linew
* [svn-r17650] Maintenance: Brought changes back from trunkElena Pourmal2009-10-151-4/+3
| | | | Platforms tested: linew (trivial change)
* [svn-r17648] Maintenance: Configure didn't cleanup Fortran module file; fixed.Elena Pourmal2009-10-152-3/+3
| | | | | | | Platforms tested: jam (trivial change) Note: Most of the Fortran compilers create module files with "mod" extension. In the past, I believe, there were systems (Cray?) that used different extensions. We should add those to the current fix when we find them.
* [svn-r17645] Purpose:Mike McGreevy2009-10-1599-2119/+1014
| | | | | | | | | | | | | | | Merge from Trunk Description: Merging all of my CFLAGS-related changes from trunk to 1.8 This includes revision #s: 17616, 17625, 17627, 17639, and 17643. Tested: h5committest and some additional checks on our FreeBSD as well as NCSA's machines.
* [svn-r17638] Description:Quincey Koziol2009-10-136-63/+80
| | | | | | | | | | | | | | | | | | | | | | | | | Bring r17624 from trunk to 1.8 branch: Don't allow reads to change or add to the metadata accumulator, since they might be speculative and could bring raw data into the metadata accumulator. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.1 (amazon) in debug mode Mac OS X/32 10.6.1 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17637] Maintenance: Brought changes back from the trunk.Elena Pourmal2009-10-131-35/+20
| | | | Platforms tested: pahra with ifort, g95 and gfortran.
* [svn-r17633] Bug 1192:Albert Cheng2009-10-131-0/+30
| | | | | | | Added EXIT_SUCEESS and EXIT_FAILURE macro values test. Tested: h5committested.
* [svn-r17632] Removed vnet assignments and allow default /vs8 and /ivf91 on ↵Allen Byrne2009-10-122-49/+48
| | | | | | command line. Tested: windows
* [svn-r17620] Add comments about h5diff changes Peter Cao2009-10-081-1/+6
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* [svn-r17614] Updated with H5Pget_preserve fix information.Albert Cheng2009-10-081-0/+1
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* [svn-r17610] Bug fix (ID 1628):Albert Cheng2009-10-082-3/+15
| | | | | | | | | There was a typo in the H5Pget_preserve that it was returning the wrong value. Fixed. Also added a test in test/cmpd_dset.c to verify the correctness of H5Pset_preserve and H5Pget_preserve. Tested: h5committest plus jam serial.
* [svn-r17607] ode Cleanup:Albert Cheng2009-10-0710-266/+27
| | | | | | | | TFLOPS machine has retired long ago. Removed all code specific for its support. Test: h5committested.
* [svn-r17605] Description:Quincey Koziol2009-10-073-40/+180
| | | | | | | | | | | Bring r17604 from trunk to 1.8 branch: Correctly invoke generic property list class callbacks all the way to the root of the class hierarchy. Tested on: FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode (h5committested on trunk)
* [svn-r17602] Bug fix:Albert Cheng2009-10-061-2/+3
| | | | | | | | | | | The ph5diff tests printout incorrectly reporting they are running h5diff when it actually is running ph5diff. Fixed. Tested: Jam (parallel), linew (serial) No H5committest since it is a shell script and Jam tests both serial and parallel h5diff for Linux while Linew tests Big endian platform.
* [svn-r17600] Description:Quincey Koziol2009-10-065-9/+7
| | | | | | | | | | | Bring r17599 from trunk to 1.8 branch: Minor code cleanups, based on cleanups in the compress_group_fheap branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committested on trunk)
* [svn-r17593] Bug fix:Albert Cheng2009-10-061-2/+4
| | | | | | | | Release would leave behind an Makefile even if it did not exist before. Fixed by restoring only the pre-existed Makefile. Tested: Jam.
* [svn-r17588] Purpose:Binh-Minh Ribler2009-10-042-3/+3
| | | | | | | | | | | Fixed bugzilla #1061 Description: Added a check for NULL before accessing a pointer Also, removed a few warnings about returning values Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r17586] Purpose: Fix bug 1597Neil Fortner2009-10-026-53/+571
| | | | | | | | | | | Description: When copying a dataset using a vlen inside a compound, the various dataset copying callbacks would allocate a background buffer but would not use it when converting from disk to memory, only memory to disk. This caused an assertion failure as compounds always need a background buffer. These callbacks have been modified to use the background buffer for both conversions. Tested: jam, linew, smirom (h5committest)
* [svn-r17579] added testlibinfo.sh testcheck_version.sh to be distcleaned.Albert Cheng2009-10-012-2/+2
| | | | Test: Jam.
* [svn-r17577] Simple improvement to clean up go during "make check-clean"Albert Cheng2009-10-012-4/+6
| | | | | | and removed the redundant cleaning of Makefile. Tested: jam parallel.
* [svn-r17574] Description:Quincey Koziol2009-10-011-10/+20
| | | | | | | | | | Bring r17573 from trunk to 1.8 branch: Fix several errors in code, which was not compiling... :-( Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committested on trunk)
* [svn-r17572] Purpose:Mike McGreevy2009-10-013-2/+6
| | | | | | | | | | | | | | Makefile Bug Fix Description: Added $(EXEEXT) extension to H5detect when it's executed to generate H5Tinit.c so it works correctly on platforms that require the full extension when running executables. Tested: h5committest, mingw, and user-verified (via submitted patch).
* [svn-r17568] Purpose:Mike McGreevy2009-10-014-48/+57
| | | | | | | | | | | | | | | | | | | | | Configure Fix Description: Modified configure to set FC and CXX to "no" when fortran and c++ are not being compiled, respectively. This will prevent configure from running some checks on these compilers when they are not being used. This fixes a problem that was occuring when FC and/or CXX are set to a nonexistant or invalid compiler. Even if the languages were disabled, a libtool test would fail, thus preventing libtool from properly linking any libraries, yet configure would not flag an error message due to this because the languages were disabled. Tested: - h5committest (jam, smirom, linew) - manually eyeballed configure output and logfile.
* [svn-r17565] Fix for Bug 1562. H5DS.c checked for other locations which need ↵Allen Byrne2009-10-015-8/+646
| | | | | | to account for platform dependent types in dealing with ds_list_t. Added generator program for test files of LE and BE dimension scales. Tested: local linux, h5committest
* [svn-r17564] Fixed a syntax error that generates a file named 0.Albert Cheng2009-10-011-2/+2
| | | | | Tested: Jam as it is simple shell script change.
* [svn-r17561] Fixed srcdir problem. Other fixes after complete testing.Allen Byrne2009-09-301-59/+139
| | | | Tested: h5committest - just smirom
* [svn-r17556] Description:Quincey Koziol2009-09-294-22/+6
| | | | | | | | | | Correct compile warnings and rename fiels to match the rest of the test files in this directory. Note: this is currently failing for srcdir builds! Tested on: FreeBSD/32 6.3 (duty)
* [svn-r17555] Description:Quincey Koziol2009-09-2921-202/+329
| | | | | | | | | | | | | | | | | | | | | | | | Bring r17553 from trunk to 1.8 branch: Bring general fixes/improvements from file_free_space branch back to trunk. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.8 (amazon) in debug mode Mac OS X/32 10.5.8 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17554] Fix for Bug 1562. H5DSis_attached needed to account for ↵Allen Byrne2009-09-299-646/+2180
| | | | | | | | platform dependent types. Added test and test files for LE and BE dimension scales. Reworked part of test_ds file as part of debug. Added missing H5Tclose in region reference routines. Tested: local linux, smirom, linew
* [svn-r17548] ↵Albert Cheng2009-09-299-43/+425
| | | | | | | | | | | | | | | | ------------------------------------------------------------------------ r17543 | acheng | 2009-09-28 23:43:22 -0500 (Mon, 28 Sep 2009) | 8 lines New test: (Bug ID 1656): Add new tests (tcheck_version, testcheck_version.sh) to verify H5check_version() does issue warnings and abort accordingly. Changed H5check_version() to suppress the warning message totally if $HDF5_DISABLE_VERSION_CHECK is 2 or higher. (Old behavior treated 3 or higher the same as 1, that is to print a warning and allows the program to continue. Tests: H5committed tested plus jam serial tested.
* [svn-r17540] Snapshot version 1.8 release 3 (snap12)Larry Knox2009-09-278-27/+27
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* [svn-r17536] Purpose: Fix bug 1620Neil Fortner2009-09-252-2/+4
| | | | | | | | | Description: H5Ppublic.h listed H5Pget_filter_by_id1 and H5Pget_filter_by_id2 as returning H5Z_filter_t, when in fact they return herr_t. The header file has been corrected to indicate that they return herr_t. Tested: jam
* [svn-r17533] Add note to RELEASE.txt for changes in r17531Neil Fortner2009-09-251-1/+3
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* [svn-r17531] Purpose: Fix bug 1555Neil Fortner2009-09-252-9/+52
| | | | | | | | | | | | | Description: At several places in H5Pint.c properties were being compared using memcmp, not using the registered "cmp" callback. This could cause memory checkers to report uninitialized memory errors, and could conceivably cause runtime errors if memcmp reported false equality (for example if a value pointed to by the property changed). The code has been changed to always use the cmp callback. Tests have been added that check this in all the places that previously used memcmp. Tested: jam, linew, smirom (h5committest)
* [svn-r17527] Description:Quincey Koziol2009-09-241-54/+46
| | | | | | | | | | Bring r17524 from trunk to 1.8 branch: Switch to using system call wrapper macros instead of "raw" system calls. Tested on: Mac OS X/32 10.5.8 (amazon) w/debug & production (too minor to require h5committest)
* [svn-r17526] Description:Quincey Koziol2009-09-246-9/+207
| | | | | | | | | Add backward compatibility test to make certain that the 1.8 library handles encountering a file with a fixed array chunk index gracefully. Tested on: FreeBSD/32 6.3 (duty) w/production (too minor to require h5committest)
* [svn-r17519] Description:Scot Breitenfeld2009-09-243-46/+55
| | | | | | | | | | | | | | Merged changes in the trunk/fortran to 1.8. svn merge -r 17485:17517 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran Brings bugfixes into 1.8 for: Bug [1471] - H5Tset_order_f missing constant option H5T_ORDER_NONE Tested: smirom (ifort) smirom (pgi)
* [svn-r17517] In the function test_rw_noupdate, I added a test with the ↵Raymond Lu2009-09-243-20/+54
| | | | | | | | | | | system functions to make sure the stat function behaves as we expected. This test is skipped on some system because the modification time from stat is the same as the last access time (We know OpenVMS behaves in this way). Tested on jam. I've tested the same change for the trunk on jam, smirom, and linew. My account for OpenVMS expired. I'll test it once I have it back.
* [svn-r17509] Move misplaced ')' after make uninstall command so 'du -ks' ↵Larry Knox2009-09-221-1/+1
| | | | | | command is run in test directory instead of running in snapshot directory. Snapshot directory has many more subdirectories and is often remote, increasing test running time and reporting incorrect disk usage. Tested on smirom in hdfdts version.
* [svn-r17504] Bug fix:Albert Cheng2009-09-221-2/+14
| | | | | | | | | | | Test failed with libhdf5.so not found in MacOS which uses a different suffix (*.dylib) for shared lib. Solution: Added code to setup shared lib file suffix according to OS types. Tested: Tejeda, jam, linew.
* [svn-r17501] Snapshot version 1.8 release 3 (snap11)Larry Knox2009-09-207-22/+22
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* [svn-r17500] Bug fix and improvement.Albert Cheng2009-09-192-11/+55
| | | | | | | | | | | | Description: Build failed when embedded-info is not enabled. Fixed. testlibinfo.sh output was ugly, did not prepare the case of embedded-info not enabled. Fixed. Also changed NOT to test test binary even if static-exec is enabled. Tested: jam (with and without embedded-info enabled). Did not test in other platforms since these were script changes that are platform independent.
* [svn-r17499] Purpose:Albert Cheng2009-09-1811-39/+158
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Stage 2 implementation of embedded library information feature. H5.c: added code to print the embedded library information when there is a library versions mis-match occurs. This ensures the library information string is included in the executable. Also modifies the code so that the Library mismatch warning string is included only once in the executable. H5private.h: Added a global reference to the libinfo string variable to prepare for possible stage 3 implementation of a public API. test/testlibinfo.sh.in: A new test added to verify the library information is indeed included in the executables. configure.in: configure: Added entry to auto-generate test/testlibinfo.sh. H5detect.c: Modified the libhdf5settings generating code to allow it to insert the strings to a file other than stdout. This maybe needed in stage 3 implementation. MANIFEST: updated with the newly added file of testlibinfo.sh.in. Tested: h5committest passed. Also passed jam in serial mode.
* [svn-r17497] Corrected location of talign.c in project files.Allen Byrne2009-09-182-10/+10
| | | | Tested: Windows
* [svn-r17495] Updated to include new h5dump region reference tests. Also ↵Allen Byrne2009-09-171-2/+4
| | | | added missing display buffer resize test.
* [svn-r17493] Bring changes from trunk to tools lib, h5dump and error handling.Allen Byrne2009-09-17261-72143/+3973
| | | | Tested: h5committest, local linux
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