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* [svn-r18773] Add files to support building library with CMakeAllen Byrne2010-05-1261-265/+9120
| | | | Tested: Local linux
* [svn-r18772] Remove hard coded path to generated file.Allen Byrne2010-05-121-1/+1
| | | | Tested: local linux, windows
* [svn-r18769] Description:Quincey Koziol2010-05-121-2/+2
| | | | | | | | | | | Bring r18768 from trunk to 1.8 branch: Correct a mis-merged patch when marking an entry dirty. Tested on: FreeBSD/32 6.3 (duty) in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode (h5committested on trunk)
* [svn-r18764] Corrected typo in Fortran CStub DLL sectionAllen Byrne2010-05-111-1/+1
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* [svn-r18762] File needed to correctly set new H5TOOLS_* export/import attributeAllen Byrne2010-05-111-0/+281
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* [svn-r18758] Corrected missed progname to function instanceAllen Byrne2010-05-111-1/+1
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* [svn-r18757] Enable tools lib to be built as a dll on windows. Added two ↵Allen Byrne2010-05-1137-501/+604
| | | | | | | | | | get/set functions for progname and d_status. Also add windows import/export declarations to functions. Updated windows - H5pubconf.h for packed bits function Tested: Windows, linux
* [svn-r18749] Purpose: Fixed bugs 1852 & 1599Binh-Minh Ribler2010-05-102-28/+34
| | | | | | | | | | | Description: - When a property class id is given to PropList(id), create new prop list, but when a property list id is given, make a copy of it. - Fixed operator= to use setId() properly. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r18748] Snapshot version 1.8 release 4 (snap21)HDF Tester2010-05-107-21/+21
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* [svn-r18744] Updated with the three new expected output files forAlbert Cheng2010-05-071-0/+3
| | | | the packed-bits tests.
* [svn-r18743] enhancement 1853:Albert Cheng2010-05-079-4/+381
| | | | | | | | | | | | | | | | | | | | | | | | | Install packed-bits feature for h5dump. Allen has installed the feature in the NPOESS feature branch. I ported it back to the v1.8 branch for v1.8.5 release. tools/h5dump/testh5dump.sh.in: Added tests for the packed-bits feature. tools/h5dump/h5dump.c tools/h5dump/h5dump.h Added code to parse and handled the packed-bits request. tools/lib/h5tools.h tools/lib/h5tools_str.c tools/lib/h5tools.c Added code to print packed-bits. tools/testfiles/tpackedbits2.ddl tools/testfiles/tnofilename-with-packed-bits.ddl tools/testfiles/tpackedbits.ddl Expected output files for packed-bits feature. Tested: h5committested the NPOESS branch. Tested in the linux VM machine in my Dove.
* [svn-r18741] Description:Quincey Koziol2010-05-0712-189/+110
| | | | | | | | | | | | | | Bring r18740 from trunk to 1.8 branch: Bring r18738 from metadata journaling 'merging' branch to trunk: Switch H5AC_resize_pinned_entry() to work on protected entries as well, and rename to H5AC_resize_entry() Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode (h5committested on trunk)
* [svn-r18728] Purpose: Fixed bug# 1719Binh-Minh Ribler2010-05-061-3/+14
| | | | | | | | | | Description: Closed a temporarily opened datatype to clean up memory leak, in getTypeClass. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r18726] Description:Quincey Koziol2010-05-0620-443/+390
| | | | | | | | | | | | Bring r18725 from trunk to 1.8 branch: Bring r18724 from metadata journaling 'merging' branch to trunk: Rename H5[A]C_rename to H5[A]C_move_entry. Tested on: FreeBSD/32 6.3 (duty) w/debug (h5committested on trunk)
* [svn-r18722] Description:Quincey Koziol2010-05-0619-515/+91
| | | | | | | | | | | | | | | Bring r18721 from trunk to 1.8 branch: Bring r18720 from metadata journaling merging branch to trunk: Bring changes from metadata journaling branch to 'merging' branch: Rename H5[A]C_mark_pinned_or_protected_entry_dirty() to H5[A]C_mark_entry_dirty() and get rid of H5[A]C_mark_pinned_entry_dirty(). Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committested on trunk)
* [svn-r18717] Description:Quincey Koziol2010-05-0622-102/+147
| | | | | | | | | | | | | | | | | | | | | Bring r18716 from trunk to 1.8 branch: Bring r18715 from metadata journaling merging branch to trunk: Changes to further align trunk with state of metadata journaling branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode
* [svn-r18710] Purpose:Mike McGreevy2010-05-0548-147/+562
| | | | | | | | | | | | | | | | | | | | | | | | | | Improve configure's large-file support control. Description: Modified configure to now attempt to add defines necessary for supporting largefiles on all systems, instead of solely on linux. This is in response to user requests to enable largefile support on Solaris by default, as well as to give extra control on AIX (instead of just jamming the necessary flag into the config files). The old --enable-linux-lfs flag is being deprecated in favor of the --enable-largefile flag (enabled by default), which can be used on all platforms. --disable-linux-lfs can still be used to disable largefile support (on linux) when the --enable-largefile flag is not specified. On systems where large files cannot be supported in this manner, configure will report as such. Tested: h5committest AIX (NCSA's blue_print machine) duty, liberty, and linew.
* [svn-r18707] I added an item in the Known Problems for the compiler's ↵Raymond Lu2010-05-051-0/+5
| | | | | | | rounding problem on Cygwin running on Windows XP. It happens in dt_arith.c when converting from unsigned long long to long double (see bug #1813).
* [svn-r18706] I changed the macro H5_CYGWIN (checked in with round 18696) to ↵Raymond Lu2010-05-054-8/+15
| | | | | | H5_CYGWIN_ULLONG_TO_LDOUBLE_ROUND_PROBLEM to make it more descriptive. I tested on jam and Cygwin.
* [svn-r18704] Description:Quincey Koziol2010-05-0565-898/+1133
| | | | | | | | | | | | | | | | | | | | | | | | | Bring r18702 from trunk to 1.8 branch: Bring r18672 from metadata journaling "merging" branch to trunk: Mostly changes to move to only using one 'user data' parameter for calls to H5AC_protect(), along with some minor reformatting code cleanups. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r18703] Purpose: Fixed bug# 1783Binh-Minh Ribler2010-05-051-1/+3
| | | | | | | Description: Corrected typo in documentation. Platforms tested: Linux/32 2.6 (jam) - very minor
* [svn-r18701] ID 1853:Albert Cheng2010-05-0444-27/+121
| | | | | | | | Added the configure option --enable-h5dump-packed-bits for the h5dump optional feature. Tested: Jam (default and --disable-h5dump-packed-bits).
* [svn-r18696] I added a macro definition if the system is Cygwin in ↵Raymond Lu2010-05-044-29/+36
| | | | | | | | | | configure.in. This macro is used to skip the data conversion test from unsigned long long to long double. The GCC on Cygwin seems to have rounding problem when doing conversion from unsigned long long to long double (Please bug #1813). Tested on jam. I'll test it on Cygwin after this checkin.
* [svn-r18694] Correct missing line (fi) in revision 18680 and remove ↵Larry Knox2010-05-038-29/+8
| | | | | | incorrect code to install scripts to run examples. Correct code to install the scripts will be checked in later. Tested on amani and talwit using daily test shell.
* [svn-r18693] Description:Binh-Minh Ribler2010-05-031-4/+5
| | | | | | | Using header file H5private.h for HDstrcpy in H5CommonFG.cpp. Platforms tested: Linux/32 2.6 (jam) FreeBSD/32 6.3 (duty)
* [svn-r18691] Description:Binh-Minh Ribler2010-05-031-0/+3
| | | | | | Added #ifndef H5_NO_DEPRECATED_SYMBOLS to getObjTypeByIdx tests. Platforms tested: amani - with --disable-deprecated-symbols
* [svn-r18689] Description:Binh-Minh Ribler2010-05-035-1/+90
| | | | | | | | | Added missing overloaded function getObjTypeByIdx to return type name as a char*. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r18688] Snapshot version 1.8 release 4 (snap20)HDF Tester2010-05-0313-30/+42
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* [svn-r18683] Purpose: Fix bugzilla 1857Binh-Minh Ribler2010-05-023-6/+42
| | | | | | | | | Description: Added missing overloaded function getObjnameByIdx to take char* for name. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r18680] Added running make install-examples to make install. Make ↵Larry Knox2010-04-3015-23/+36
| | | | install-examples will still install example files and make install will also install them.
* [svn-r18679] Albert fixed the bug (#1764) in H5detect.c and added a few new ↵Raymond Lu2010-04-301-0/+9
| | | | | | | | macros in H5config.h.in. I added them - H5_HAVE_SETJMP, H5_HAVE_SIGPROCMASK, and H5_HAVE_SIGSETJMP. Tested on OpenVMS and everything passed.
* [svn-r18678] Just mopped up some looseends by using the macro HDxyz instead ↵Albert Cheng2010-04-291-7/+7
| | | | | | | | the xyz function names. Tested: Jam only since this is trivial.
* [svn-r18676] Updated scripts for H5copy r18400 and H5ls r18643Allen Byrne2010-04-292-2/+54
| | | | Tested: windows
* [svn-r18667] Description:Quincey Koziol2010-04-291-7/+7
| | | | | | | | | Bring r18666 from trunk to 1.8 branch: Switch H5Rget_obj_type to H5Rget_obj_type2. Tested on: Linux/64 2.4 (amani) w/PGI compiler
* [svn-r18665] Description:Quincey Koziol2010-04-291-4/+10
| | | | | | | | | | | | | | Bring r18664 from trunk to 1.8 branch: Add a few H5Tequal() calls to make certain that the native datatype constructed with H5Tget_native_type() is identical to the memory datatype created from the struct in memory. Tested on: Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode (h5committested on trunk)
* [svn-r18661] Description:Quincey Koziol2010-04-282-122/+105
| | | | | | | | | Tweak H5detect to be even more careful about its actions, to allow gcc 4.5 to use '-O3'. Also, minor code cleanups in H5Tfloat.c Tested on: FreeBSD/64 6.3 (liberty) w/gcc 4.5 & production mode (h5committest not necessary/appropriate)
* [svn-r18658] Bug: 1764Albert Cheng2010-04-284-69/+221
| | | | | | | | | | | | | | | | | | | | | | | | Description: longjmp do not necessary restore signal that is blocked during the signal handling. This caused the Alignment test to fail quietly, resulting in wrong alignment information which will cause failures later. Solution: One can use sigsetjmp/siglongjmp to restore signal handling but not all systems such as Cray XT or VMS supports sigsetjmp. Backup solution is to use sigprocmask to reset the signal. Again, some systems may not support it either. Added code to try the first and then the second solution. Also added tests to verify if the signal_handler routines are working properly. Finally, added code to print results of the verification (in form of comments) to H5Tinit.c for inspection in case of failure. (Note that many platforms do not have alignment limits at all and ALIGNMNET code never raise the SIGBUS or SIGSEGV errors. In those cases, it does not matter whether the signal handlers work or not. Again, this can be deduced from the results comments near the end of the H5Tinit.c. If the sum of signal handlers called equals the total of verify, it means ALIGNMENT does not raise any signals.) Tested: htcommittested (linew is not accessible), jam(serial), Redstorm.
* [svn-r18656] I added some more comments. No test is needed.Raymond Lu2010-04-281-2/+18
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* [svn-r18653] Bug 1741:Allen Byrne2010-04-282-1/+176
| | | | | | | | Added check in H5Rcreate for space_id = -1 and is region reference type. Added test of H5R package API parameters to testhdf5 test, these test only the public API parameter checks. Tested: local linux
* [svn-r18652] Description:Quincey Koziol2010-04-2732-55/+96
| | | | | | | | | | | | Bring r18650 from trunk to 1.8 branch: Bring back various minor tweaks & cleanups from the revise_chunks branch. Tested on: FreeBSD/32 6.3 (duty) in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode (h5committested on trunk)
* [svn-r18646] In H5T_get_native_type of H5Tnative.c, I changed the way that ↵Raymond Lu2010-04-277-33/+66
| | | | | | | | | the offset, alignment, and size of nested compound type are calculated by using H5T_cmp_offset. The old way had a bug in it (see bug #1850). Tested on amani, linew, and jam.
* [svn-r18645] Add testing of H5Lcopy() and H5Lmove() between files for soft ↵Neil Fortner2010-04-271-2/+30
| | | | | | | | and external links. Tested: Fedora (too minor for commit test)
* [svn-r18643] Purpose:Jonathan Kim2010-04-272-2/+7
| | | | | | | | | | | Fix for Bug 1793 - h5ls on a non-existent file gives 0 return code Description: Merged from hdf5 trunk r18642. After the fix, h5ls returns 1 (EXIT_FAILURE) if non-existent file is given. Tested: jam
* [svn-r18641] Description:Binh-Minh Ribler2010-04-272-10/+16
| | | | | | | | Added a null character to terminate a fixed-length string returned by H5Aread. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty)
* [svn-r18636] Description:Quincey Koziol2010-04-271-4/+5
| | | | | | | | More tweaks to PGI compile flags, to avoid too many warnings in system header files. Tested on: Linux/64 2.4 (amani) w/PGI 9.x & 10.x
* [svn-r18635] Description:Quincey Koziol2010-04-2713-44/+400
| | | | | | | | | | | Bring r18634 from trunk to 1.8 branch: Clean up compiler warnings. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode (h5committested on trunk)
* [svn-r18633] Description:Quincey Koziol2010-04-272-7/+12
| | | | | | | | | Bring r18632 from trunk to 1.8 branch: Clean up memory leak in test code. Tested on: Linux/64 2.4 (amani) w/debug & valgrind
* [svn-r18631] Description:Quincey Koziol2010-04-272-352/+423
| | | | | | | | | | | | | Bring r18630 from trunk to 1.8 branch: Fix remaining aliasing problems and enable optimizations w/gcc now. This addresses the remaining issues for Bug#1398. Tested on: Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode (h5committested on trunk)
* [svn-r18628] Description:Quincey Koziol2010-04-252-21/+14
| | | | | | | | | | | | Bring r18627 from trunk to 1.8 branch: More progress toward addressing Bz#1398: add 'volatile' keyword to floating- point types when detecting their properties. Also, minor code formatting cleanups. Tested on: Mac OS X/32 10.6.3 (amazon) w/debug) (h5committested on trunk)
* [svn-r18626] Description:Quincey Koziol2010-04-233-602/+610
| | | | | | | | | | | Bring r18625 from trunk to 1.8 branch: Checkpoint progress on Bz#1398 - strict aliasing issues. (Lots of compiler warnings & code cleanups also) Tested on: Mac OS X/32 10.6.3 (amazon) in debug mode (h5committested on trunk)
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