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* [svn-r19196] Defined the file format version H5F_LIBVER_18 to prepare for ↵Raymond Lu2010-08-091-0/+4
| | | | | | | | the 1.10 release. It isn't used anywhere yet. Tested on jam - very simple change and not used.
* [svn-r19194] Bug fix: ID 1917Albert Cheng2010-08-091-1/+1
| | | | | | Fixed a typo in the Windows definitions. Had __ftelli64, should be _ftelli64. Tested by Allen in Windows platform.
* [svn-r19187] Bug fix: ID 1917Albert Cheng2010-08-061-31/+43
| | | | | | | | | | | The STDIO only checked for fseeko and incorrectly assumed it can support file sizes larger than 32bits. Fixed it by making to use fseeko64 if supported, else use fseeko. To simplify the code, assume fseeko which is a POSIX function must be supported. Therefore, fseek is not used at all. (Note: the above applies to Unix-like system. The Windows platform has hardcoding using Windows functions which are NOT POSIX compliant.) Tested: h5committested. Also tested in BP (AIX) 32/64 and enable/disable-largefile.
* [svn-r19186] Bug fix: ID 1917Albert Cheng2010-08-062-8/+8
| | | | | | | | In some machine (Linux), when --disable-largefile is used, it claims it has fseeko64 but off64_t is NOT supported. Moved the test of fseeko64 and ftello64 to where fseek64 is so that they are tested only if off64_t is supported. Tested: h5committested.
* [svn-r19184] Corrected h5repack verbose test for windowsAllen Byrne2010-08-063-28/+39
| | | | | | Updated tools/lib source dir variable for source list Tested: local linux
* [svn-r19182] Description:Quincey Koziol2010-08-068-12/+164
| | | | | | | | | | | | | | | | | | | | | | | | Bring r19179 from trunk to 1.8 branch: Bring changes from Coverity branch back to trunk: r19079 & 19080: [BZ1942] h5dump -u to generate XML, it does not respect the -m option xml version of dump_data function didn't check for use of fp_format variable. Added new test expected file for committed bug 1942 r19103, 19104 & 19105: [BZ1821] h5repack -v did not display correct output for a selected compression. Needed new test for comparing output of -v option. Added new test file for solution to BZ1821 BZ1821 - Bring test changes from the shell script actually used. Tested on: Mac OS X/32 10.6.4 (amazon) debug & production (h5committested on branch)
* [svn-r19177] Took out several redundant lines when object IDs are closed.Raymond Lu2010-08-051-9/+0
| | | | Tested on jam.
* [svn-r19172] Bug fix for #1239 - The filter's public function CAN_APPLY ↵Raymond Lu2010-08-058-30/+238
| | | | | | | | | | | | should return htri_t not herr_t. To minimize the change of the library's behavior, in the function H5Z_prelude_callback of H5Z.c, if the return value of can_apply is FALSE and the filter is MANDATE, this function returns a FAILURE. If the return value is FALSE but the filter is OPTIONAL, this function returns a SUCCEED. During the IO, the filter will fail and return a size of zero. But the pipeline will skip this filter. Tested on jam, linew, and amani. Tested on jam with szip.
* [svn-r19170] Bug fix: 1917.Albert Cheng2010-08-052-8/+11
| | | | | | | | The previous fix had the Windows code in H5private.h but they should have been in H5win32defs.h which holds all Windows-specific definitions. Moved the fix. Tested: BP (AIX) to confirm the fix is still valid. Windows tests will occur in daily tests tonight.
* [svn-r19169] Description:Quincey Koziol2010-08-042-3/+3
| | | | | | | | | Bring r19168 from trunk to 1.8 branch: Clean up compiler warning Tested on: None, eyeballed only (tested on trunk)
* [svn-r19166] Bug fix: 1917.Albert Cheng2010-08-033-29/+25
| | | | | | | | | | | | | | | | | Description: test/big incorrectly determined not able to write files larger than 2GB and skipped the SEC2 and STDIO driver tests. The reason was because it was using off_t while the SEC2 driver is using lseek64 which expects off64_t type. Solution: Created a new HDoff_t which is set to off_t or off64_t or other appropriate type depending on which of lseek or lseek64 is available. Changed SEC2 file driver and the big test to use this common definition. Tested: In BP (AIX), using --enable and --disable-largefile, for both 32 and 64 bits modes. Did not do h5committest because: 1. the error was exposed in the remote BP machine; 2. the change is trivial.
* [svn-r19164] Add configure changes from r19159 to CMake.Allen Byrne2010-08-022-0/+8
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* [svn-r19159] Added the tests for fseeko64 and ftello64 which will be used by ↵Albert Cheng2010-07-304-5/+11
| | | | | | | | | the STDIO VFD if they are available. Tested: jam only since it was tests for two new functions that are not used by the code yet.
* [svn-r19158] Description:Quincey Koziol2010-07-308-380/+423
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r19156 from trunk to 1.8 branch: Bring revisions from Coverity branch back to trunk: r19044: Coverity #449 - Line 1560 called function H5O_chunk_protect for 2 pointers to allocate. But when there's failure on the second one, the first wasn't freed (H5O_chunk_unprotect). We fixed it by freeing the pointers when an error happens. r19045: Fixed coverity issue # 319. Free sec_node in done if it is not NULL. r19046: Add intended but missing assignments to initialize pointers to NULL (coverity issue fixes). r19049: Hdf5_1_8_coverity branch was recreated from hdf5_1_8 branch in revision 18839 without fix for Coverity issue #84 having been propagated to the hdf5_1_8 branch. This revision adds the fix again. r19060: added parentheses to see if they will keep subversion from getting confused r19061: Fix coverity item 139. Fixed incorrect condition for freeing buffer on error. Fix coverity items 20 and 21. Removed unused NTESTS facility from dtypes.c. Cleanup in H5Shyper.c. r19062: Fix coverity item 450. Check to see if chk_proxy has been allocated before attempting to free it. Fix coverity item 454. Check to see if allocation of buf failed in H5D_fill_refill_vl. Fix coverity items 455-457. Initilize hid_t's to -1, check their value before attempting to close them, and check if the close failed. r19063: New fix to address coverity issue #84. Check that pointers in H5Z_xform_find_type are not NULL before passing them to H5T_cmp. Tested on: Mac OS X/32 10.6.4 (amazon) w/debug & production (h5committested on Coverity branch)
* [svn-r19157] Description:Quincey Koziol2010-07-301-14/+18
| | | | | | | | | | | | | | | | | Bring r19078 from Coverity branch to 1.8 branch (code doesn't exist on trunk): Purpose: Resolve Memory Leaks Description: Free saved ID structures in H5I interface when library shuts down. Tested on: Mac OS X/32 10.6.4 (amazon) w/debug & production (Too minor to require h5committest)
* [svn-r19155] Remove line in clean target that removes installed header files.Larry Knox2010-07-292-2/+0
| | | | Tested with h5 committest on amani, jam, heiwa and linew.
* [svn-r19154] Description:Quincey Koziol2010-07-298-343/+278
| | | | | | | | | | | | | | | | | | | | | | | | | | Bring r19153 from trunk to 1.8 branch: Bring changes on Coverity branch back to trunk: r19040: Fixed coverity #440 - NULL check after dereference. We moved the NULL check up into the IF block and changed it to assertion. r19041: Maintenance: Addressed Coverity issues 441 and 449 by initializing proper variables r19042: In function H5O_chunk_protect (H5Ochunk.c): - Initialize H5O_chunk_proxy_t pointers chk_proxy and ret_value. - Free chk_proxy on error. r19043: Addressed coverity issues 442 - 448 by initializing pointers to NULL. Tested on: Mac OS X/32 10.6.4 (amazon) w/debug & production (Too minor to require h5committest)
* [svn-r19152] Correction from the previous checkin for H5Oattribute.c. ↵Raymond Lu2010-07-291-3/+8
| | | | | | | | | | Because the attribute structure it is shared now. The only situation that requires copying the data is when the metadata cache evicts and reloads this attribute. The attribute structure will be different in that situation. Tested on jam.
* [svn-r19149] Maintenance: Removed misleading information about the ↵Elena Pourmal2010-07-291-16/+6
| | | | | | | HDF4-to-HDF5 tools. The tools became a part of the h4h5tools distribution long time ago, but the INSTALL file was not updated in the development branch and slipped into 1.8 releases and current trunk.
* [svn-r19147] Purpose: Fix bug in direct IO driverNeil Fortner2010-07-282-80/+155
| | | | | | | | | | | Description: In certain circumstances, the direct I/O driver did not perform correctly when data was unaligned. The driver has been patched to fix this. Also added some potential performance improvements for the unaligned case, and strengthened the test for whether the data needs to be aligned. Tested: cobalt
* [svn-r19143] Update for the bug fix of #1956.Raymond Lu2010-07-281-0/+3
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* [svn-r19141] I added H5Itest.c. Raymond Lu2010-07-281-1/+1
| | | | Not tested yet.
* [svn-r19139] In line 861, there's no need to allocate data buffer or copy ↵Raymond Lu2010-07-281-10/+3
| | | | | | | | the data because the attribute structure is shared now. Only do an assertion check, instead. Tested the same change for 1.8.5 on jam - simple change.
* [svn-r19136] Added new file to windows project files.Allen Byrne2010-07-283-4/+13
| | | | Added new file to src/CMakeLists.txt
* [svn-r19134] Description:Quincey Koziol2010-07-2812-157/+339
| | | | | | | | | | | | | | | | | Bring r19133 from trunk to 1.8 branch: Correct traversal of user-defined links (including external links) to retain path information of object, allowing H5Iget_name() queries to work quickly (without searching entire destination file). This required some refactoring and addition of a mechanism to detect if a "fast" query was performed (for the tests). Minor code cleanups, etc. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode (h5committest performed on trunk)
* [svn-r19132] Description:Quincey Koziol2010-07-271-0/+4
| | | | | | | | Reduce compiler optimizations for v10.6, to work around bug with static constant char *'s. Tested on: Linux/32 2.4 (jam) w/PGI
* [svn-r19129] Description:Quincey Koziol2010-07-261-2/+2
| | | | | | | Correct another inadvertant use of macro instead of versioned API name. Tested on: Eyeballed only, too minor to require h5committest
* [svn-r19128] Description:Quincey Koziol2010-07-231-1/+1
| | | | | | | | Change use of API wrapper to using versioned API routine (i.e. H5Eprint -> H5Eprint2) Tested on: None, eyeballed only, too simple
* [svn-r19126] Description:Quincey Koziol2010-07-222-6/+21
| | | | | | | | | | Bring r19124 from trunk to 1.8 branch: Add some error checking to the process of creating superblock extension. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committest performed on trunk)
* [svn-r19121] Description:Quincey Koziol2010-07-221-1/+1
| | | | | | | Bump the testing timer value from 30 to 60 minutes. Tested on: None, just eyeballed, too simple to require test
* [svn-r19119] Description:Quincey Koziol2010-07-211-1/+1
| | | | | | | | Fix return value from FAIL to NULL. Tested on: Eyeballed only (too trivial to test)
* [svn-r19117] Corrected positioning of cmake variables in definition order.Allen Byrne2010-07-211-43/+43
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* [svn-r19115] Description:Quincey Koziol2010-07-2022-137/+42
| | | | | | | | | Rename H5AC_set() to H5AC_insert_entry() Get rid of H5C_set_skip_flags() & related flags Tested on: Mac OS X/32 10.6.4 (amazon) w/debug (too simple to require h5committest)
* [svn-r19109] Corrected cmake location of ConfigureChecks.cmakeAllen Byrne2010-07-201-1/+1
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* [svn-r19106] Move Resources folder to config/cmakeAllen Byrne2010-07-2023-52/+66
| | | | Tested: Local Linux
* [svn-r19100] Description:Quincey Koziol2010-07-193-4/+4
| | | | | | | | | | | | Bring r19099 from trunk to 1.8 branch: Fix const pointer issues for projection construction routine and also bump time before alarm kicks in to terminate a test from 20 minutes to 30 minutes, to give the PGI compiler tests w/debugging enabled a chance to finish. Tested on: Mac OS X/32 10.6.4 (amazon) w/debug Linux/32 2.6.18 (jam) w/PGI & debug
* [svn-r19098] Description:Quincey Koziol2010-07-191-6/+14
| | | | | Add notes for recent performance improvements & bug fixes (r19092 & r19097).
* [svn-r19097] Description:Quincey Koziol2010-07-1912-1374/+4812
| | | | | | | | | | | | | | | | | | | | | | | Bring r19096 from trunk to 1.8 branch: Bring "round robin" metadata write strategy code from 'round_robin' branch to the trunk. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/default API=1.8.x, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (amani) w/Intel compilers, w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in debug mode Mac OS X/32 10.6.3 (amazon) in debug mode Mac OS X/32 10.6.3 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r19093] Description:Quincey Koziol2010-07-1920-1106/+13125
| | | | | | | | | | | | | | | | | | | | Bring r19092 from trunk to 1.8 branch: Bring "shape same" changes from LBL branch to trunk. These changes allow shapes that are the same, but projected into dataspaces with different ranks to be detected correctly, and also contains code to project a dataspace into greater/lesser number of dimensions, so the I/O can proceed in a faster way. These changes also contain several bug fixes and _lots_ of code cleanups to the MPI datatype creation code. Many other misc. code cleanup are included as well... Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode (h5committested on trunk)
* [svn-r19091] Snapshot version 1.8 release 5 (snap4)HDF Tester2010-07-198-24/+24
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* [svn-r19082] Made ';' after H5_PUSH_FUNC consistent throughout H5private.h ↵Larry Knox2010-07-162-5/+5
| | | | | | | | | to fix compile failure with Sun 5.10 C compiler. Added Sun 5.10 compilers to RELEASE.txt. Tested on linew. Tested on amani, heiwa, and jam with h5committest.
* [svn-r19077] Purpose: Fix bug 1951Neil Fortner2010-07-169-17/+148
| | | | | | | | | | | | Description: A bug introduced in 1.8.5 causes local heap data blocks to be mis-aligned when sizeof_offsets + 2*sizeof_lengths is not a multiple of 8. In this case, the address of the data block as stored in the heap prefix is aligned but the actual data block is not. This causes files created with these sizes to be corrupted, and prevents uncorrupted files with these sizes to be unreadable. Modified local heap code to account for alignment. Tested: jam, amani, linew (h5committest)
* [svn-r19073] Added check for no encoding to determine result for testAllen Byrne2010-07-151-2/+7
| | | | Tested: Windows
* [svn-r19071] Bug 1921: change to use mpiexec.Albert Cheng2010-07-141-1/+1
| | | | | | Changed the mpirun to mpiexec in the comment line. Tested: jam (pp). No h5committest since this applied in parallel only.
* [svn-r19069] Document update: ID 1921 change mpirun to mpiexecAlbert Cheng2010-07-142-6/+9
| | | | Changed the use of mpirun to mpiexec which is the MPI-2 official standard.
* [svn-r19067] Bug fix: ID 1921 change mpirun to mpiexecAlbert Cheng2010-07-142-134/+27
| | | | | | | | | | | Removed the recognition of parallel compilers of LAM (hcc) and ChMPIon (cmpicc) since we have no access to these two MPI implementations and decided not to support them any more. Test: Jam using parallel tests: 1. use CC=mpicc and confirmed it is recognized as a parallel compiler; 2. use CC=hcc and confirmed it is NOT recognized as a parallel compiler any more.
* [svn-r19066] Description:Frank Baker2010-07-131-1/+1
| | | | | | | Update pointer to HDF5 docs to point to 'hdfgroup.org'. Testing: Only the process of generating the "C++ RM" is tested. The software has not been tested with this change as it should affect only the doxygen-generated documentation.
* [svn-r19065] Snapshot version 1.8 release 5 (snap3)HDF Tester2010-07-127-22/+22
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* [svn-r19058] Purpose: Jonathan Kim2010-07-081-0/+4
| | | | | | | | | | add reference file entries for the new test expected output files Description: This is related to r19053. Tested: Windows (cmake)
* [svn-r19055] Corrected a typo in a macro that used a version variable.Allen Byrne2010-07-081-1/+1
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