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* [svn-r17147] Description:Quincey Koziol2009-07-0216-218/+330
| | | | | | | | | | | Bring r17146 from trunk to 1.8 branch: Bring a bunch of misc. improvements & tweaks from the revise_chunks branch back to the trunk, so that future merges won't be so painful. Tested on: FreeBSd/32 6.3 (duty) (h5committested on trunk)
* [svn-r17139] Description:Quincey Koziol2009-07-016-11/+75
| | | | | | | | | | | | Bring r17138 from trunk into 1.8 branch: Disable use of temporary file space allocation when using a parallel VFD, until we've made changes to broadcast the new address of the metadata when it is relocated down into 'normal' file space. Tested on: Mac OS X/32 10.5.8 (amazon) (h5committested on trunk)
* [svn-r17134] Snapshot version 1.8 release 3 (snap3)Larry Knox2009-07-017-21/+21
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* [svn-r17131] Corrected some typos. No test is needed.Raymond Lu2009-06-301-2/+2
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* [svn-r17127] A revision from last round of checkin (r17124). H5Aopen_name ↵Raymond Lu2009-06-291-4/+4
| | | | | | | | | has been deprecated. I replaced it with H5Aopen in this round. I also updated some hard-coded numbers with some macros. Tested on jam only. I have tested the same change for the trunk.
* [svn-r17124] Bug fix #1513. Reading an empty attribute caused seg fault. ↵Raymond Lu2009-06-265-23/+63
| | | | | | | | | | | | The flag "initialized" in the attribute structure wan't set correctly. It caused some confusion in H5A_read. This flag was actually redundant because the library can alwasy check if the data buffer is present. To fix it, I removed the "initialized" flag in the attribute structure and let H5A_read check the data buffer. I tested it on jam only but have tested the same change for the trunk on jam, smirom, and linew.
* [svn-r17121] Add bug number for yesterday's fix.Neil Fortner2009-06-261-1/+1
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* [svn-r17114] Newer Solaris compiler uses -m64 inplace of -xarch=v9 which is ↵Albert Cheng2009-06-261-1/+1
| | | | | | | | deprecated. Update the install instruction. No test needed.
* [svn-r17113] Maintenance: Removed duplicated entry from the MANIFEST file.Elena Pourmal2009-06-251-1/+0
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* [svn-r17109] Purpose: Fix bug in H5Z_filter_infoNeil Fortner2009-06-253-1/+14
| | | | | | | | | | | Description: Previously, when H5Z_filter_info was called for a filter that was not present, it would succeed and return the information from one position past the end of the pipeline, possibly causing a segfault. This affected at least H5Pget_fitler_by_id1/2, and possibly other API functions. Fixed to properly return failure. Tested: jam, linew, smirom (h5committest)
* [svn-r17107] Added new windows build examples batch fileAllen Byrne2009-06-251-0/+1
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* [svn-r17102] Added missing Windows batch file.Allen Byrne2009-06-241-0/+221
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* [svn-r17100] Corrected batch file to test C++ examplesAllen Byrne2009-06-241-86/+7
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* [svn-r17086] Description:Scot Breitenfeld2009-06-182-11/+2
| | | | Removed debugging print statements.
* [svn-r17084] Description:Quincey Koziol2009-06-184-114/+350
| | | | | | | | | | | | | | | | | | | | | | | | | Bring r17038-17039,17045,17062 from trunk to 1.8 branch: Switch fractal heap direct & indirect blocks to use temp. space alloc. Improvements to metadata accumulator Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17083] Description:Quincey Koziol2009-06-1811-18/+376
| | | | | | | | | | | | | | | | | | | | | | | Bring r17010,17017,17021-17022,17029-17031,17035 back from trunk: "temporary" file allocation space changes. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17082] Disable hanging invalid files test.Larry Knox2009-06-181-2/+3
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* [svn-r17078] Implemented nowrap option (Bug 811) equivalent to h5ls tool. ↵Allen Byrne2009-06-172-4/+18
| | | | | | Also updated usage output. Tested: linux
* [svn-r17077] merge 17076 from trunkPedro Vicente Nunes2009-06-173-67/+88
| | | | | | | bug fix: h5repack was not applying a requested contiguous layout for a dataset with filters added a test to the C program test (not to the script), that verifies the layout and filters tested: linux
* [svn-r17060] merge 17058 from trunkPedro Vicente Nunes2009-06-162-0/+5
| | | | | added some "dummy" declarations for d_status tested: linux
* [svn-r17057] Rev 17053 added new test to h5repack test script, which ↵Allen Byrne2009-06-161-4/+47
| | | | | | requires that the windows batch file be updated. Tested: Windows XP32
* [svn-r17055] Added missing windows vnet project files.Allen Byrne2009-06-161-0/+2
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* [svn-r17053] merge 17052 from trunkPedro Vicente Nunes2009-06-153-3/+53
| | | | | | | | | | Add a run to the h5repack shell script to read a family file The file used for input is located in the common source tools for testfiles, in tools/testfiles Modified the h5repack shell script to read files from this location (h5repack reads its input files from a dedicated testfiles location in h5repack/testfiles) Changed the h5diff open file call to use h5tools_fopen, so that it can open all file drivers Tested: linux
* [svn-r17051] merge changes from the trunk into the branchScot Breitenfeld2009-06-152-8/+8
| | | | | | | svn merge -r 16797:17050 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran platforms tested: smirom: ifort, icc
* [svn-r17050] Added perf_serial project files to Windows vnet folder.Allen Byrne2009-06-153-2/+431
| | | | Tested: Windows XP32
* [svn-r17048] Snapshot version 1.8 release 3 (snap2)Larry Knox2009-06-147-22/+22
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* [svn-r17044] Corrected Windows solution files for branchAllen Byrne2009-06-122-136/+16
| | | | Tested: windows
* [svn-r17043] Undo the addition of generated files, mistakenly added by lack ↵Allen Byrne2009-06-1227-2148/+0
| | | | of attention.
* [svn-r17042] Updated perf_serial test to work on windows. Bring back from trunk.Allen Byrne2009-06-1231-229/+2383
| | | | | Tested: Windows
* [svn-r17041] New perf_serial project filesAllen Byrne2009-06-121-0/+2
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* [svn-r17037] perf_serial project files added and test added to performance ↵Allen Byrne2009-06-115-390/+1624
| | | | | | batch file Tested: XP32 VS2005
* [svn-r17036] Updated perf_serial test to work on windows. Bring back from trunk.Allen Byrne2009-06-114-3/+65
| | | | | Tested: Windows
* [svn-r17026] Purpose: fix bug 1593Neil Fortner2009-06-103-99/+308
| | | | | | | | | | | | Description: When using H5T_copy on committed datatypes that are already open, H5T_copy would properly use the already existing shared struct, but would still deep copy all of the fields in that struct. This would cause memory leaks, and in the case of a compound containing a vlen (or reference), the change in size would cause the size of the resulting type to be set to an incorrect value. Changed H5T_copy to properly avoid deep copies when using a reopened shared struct. Tested: jam, linew, smirom (h5committest), purify on jam
* [svn-r17023] Description:Scot Breitenfeld2009-06-102-1/+11
| | | | Added debug statements in order to investigate intermittent failing of test on honest4 at NCSA, remove after debugging.
* [svn-r17020] Description:Quincey Koziol2009-06-092-7/+109
| | | | | | | | | | | Bring revision 17019 from trunk to 1.8 branch: Break out the configure check for fseeko & ftello from lseek64/fseek64/ ftruncate64, since the check for the latter routines is not a valid check for the former routines. Tested on: (h5committested on trunk)
* [svn-r17013] Snapshot version 1.8 release 3 (snap1)Larry Knox2009-06-077-22/+22
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* [svn-r17004] Description:Quincey Koziol2009-06-045-42/+67
| | | | | | | | | | | | | | Bring r17002 from trunk to 1.8 branch: Rename H5O_protect/H5O_unprotect to be H5O_pin/H5O_unpin, since that's what that are actually doing. Add counter of the number of times the object header is pinned, to allow H5O_pin/H5O_unpin to be called reentrantly. Tested on: Mac OS X/32 10.5.7 (amazon) w/debug & prod h5committest already run for trunk version of change
* [svn-r16999] merge 16991 from trunkPedro Vicente Nunes2009-06-039-14/+15
| | | | | change messages of -c option tested: windows, linux
* [svn-r16993] Snapshot version 1.8 release 3 (snap0)Larry Knox2009-06-019-48/+48
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* [svn-r16987] Description:Quincey Koziol2009-05-273-45/+43
| | | | | | | | | Bring r16986 from trunk to 1.8 branch: Clean up formatting & error reporting. Tested on: Mac OS X/32 10.5.7 (amazon) (h5committest done on trunk)
* [svn-r16974] Description:Quincey Koziol2009-05-212-14/+8
| | | | | | | | | | Bring r16973 back from trunk to 1.8 branch: Refactor chunk cache entry information to remove some [actually] unused fields. Tested on: <tested on trunk>
* [svn-r16965] merge 16964 from trunkPedro Vicente Nunes2009-05-202-2/+2
| | | | | bug fix: the phrase "Not comparable" was not being printed for the case of different classes tested: windows, linux
* [svn-r16953] corrected name of zlib in Section IV, part 3, step 2Allen Byrne2009-05-151-2/+2
| | | | Tested: windows
* [svn-r16948] merge 16947Pedro Vicente Nunes2009-05-135-518/+615
| | | | | | | | | #1522 (B1) h5ltread_dataset_string_f error with g95 ISSUE: h5ltread_dataset_string_f causes library assertion with g95. SOLUTION: convert the fortran string buffer to a C buffer with HD5f2cstring, and pass this string to the C function TEST: added a test call in the fortran test lite program DOCS: added the note in RELEASE.txt "- Lite: the h5ltread_dataset_string_f and h5ltget_attribute_string_f functions had memory problems with the g95 fortran compiler. (PVN - 5/13/2009) 1522 tested: linux g95, windows fortran intel 11
* [svn-r16946] merge 16945 from trunkPedro Vicente Nunes2009-05-133-2390/+2824
| | | | | bug fix. call free on a string allocated by HD5f2cstring tested: linux, windows
* [svn-r16939] Purpose:Mike McGreevy2009-05-122-2/+38
| | | | | | | | | | | | | | | | | | Modifying default cache configuration, and adding an #ifdef to allow for a separate default configuration when parallel is enabled. This is being modified in order to address an observed performance problem with the current default configuration. Description of Changes: - increasing maximum cache size from 16MB to 32MB - increasing maximum entry size from 10MB to 32MB - decreasing min_clean_fraction from 0.3 to 0.01 in serial case - increasing flash_multiple from 1.0 to 1.4 in serial case Tested: jam
* [svn-r16929] Bug 948:Albert Cheng2009-05-081-6/+4
| | | | | | | | | | | | | Skipped the test of TESTING $H5DIFF -v $SRCFILE9 $SRCFILE10 TOOLTEST h5diff_100.txt -v $FILE9 $FILE10 again because they still hanged. Do not turn it back on until it is proven fixed. Also, want to verify if this is the only tests that hang or if other tests may hang or if any non-thg machines may hang. Tested: jam-pp since it is a simple shell-script change.
* [svn-r16922] Allow an error class to use other class's major or minor ↵Raymond Lu2009-05-053-15/+34
| | | | | | errors. Added a test for it, too. Tested on jam - simple change. I've tested it for the trunk.
* [svn-r16920] Description:Quincey Koziol2009-05-0544-220/+2978
| | | | | | | | | | | | | | | | | | | | | | | | | | | | Merge these trunk revisions which occurred during the 1.8.3 release code freeze back to the 1.8 branch: From Quincey: 16845 16847 16849 16851 16858 16869 16897 From Ray: 16859 16880 From Allen: 16863 Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.6 (amazon) in debug mode Mac OS X/32 10.5.6 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r16917] Maintenance: Changed suffix in the version number to snap0.Elena Pourmal2009-05-047-22/+22
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