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* [svn-r15629] Description:Quincey Koziol2008-09-16236-4651/+4651
| | | | | | | | | | | | | Remove trailing whitespace from C/C++ source files, with the following script: foreach f (*.[ch] *.cpp) sed 's/[[:blank:]]*$//' $f > sed.out && mv sed.out $f end Tested on: Mac OS X/32 10.5.5 (amazon) No need for h5committest, just whitespace changes...
* [svn-r15625] This check-in fixes a bug inside parallel HDF5 testsuite.MuQun Yang2008-09-151-2/+22
| | | | | | | | | When enable-debug is turned on, a special macro block H5_HAVE_INSTRUMENTED_LIBRARY inside HDF5 will be executed to check if some collective chunk IO test cases are being run with the correct settings(one link, multiple chunk etc.). However,when complicated derived datatype in some mpi-io packages are not supported, the library has to switch one link IO with/without the optimization to multiple chunk IO with/without the optimization. The current testsuite doesn't know this and generates a false assertion failure message. This check-in fix this problem by providing a second property to avoid the false faiure message. Tested at abe(NCSA linux cluster) and kagiso.
* [svn-r15624] This check-in fixes a bug inside parallel HDF5 testsuite.MuQun Yang2008-09-152-2/+32
| | | | | | When enable-debug is turned on, a special macro block H5_HAVE_INSTRUMENTED_LIBRARY inside HDF5 will be executed to check if some collective chunk IO test cases are being run with the correct settings(one link, multiple chunk etc.). However,when complicated derived datatype in some mpi-io packages are not supported, the library has to switch one link IO with/without the optimization to multiple chunk IO with/without the optimization. The current testsuite doesn't know this and generates a false assertion failure message. This check-in fix this problem by providing a second property to avoid the false faiure message.
* [svn-r15621] Snapshot version 1.8 release 1 (snap4)HDF Tester2008-09-146-19/+19
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* [svn-r15613] Description:Quincey Koziol2008-09-114-12/+11
| | | | | | | | | Bring back r15612 from trunk: Minor cleanups of formatting, etc. Tested on: Mac OS X/32 10.5.4. (amazon) Too minor to require h5committest
* [svn-r15610] Description:Quincey Koziol2008-09-1056-2304/+2559
| | | | | | | | | Bring r15609 back from trunk: Omnibus compiler warning cleanup & some formatting happiness. Tested on: Mac OS X/32 10.5.4 (amazon) Too minor to require h5committest
* [svn-r15605] The MPI compiler(mvapich2-0.9.8p2patched-intel-ofed-1.2) at ↵MuQun Yang2008-09-081-1/+3
| | | | | | | | | NCSA's linux cluster(Abe) fails to handle collective IO calls with very complicate MPI derived datatype. All the values of input parameters from HDF5 are correct before passing to MPI-IO collective calls. Sometimes the following errors happen: rank 0 in job 77 honest1.ncsa.uiuc.edu_60945 caused collective abort of all ranks exit status of rank 0: killed by signal 9 Up to this point, we decide to turn off the use of advanced MPI derived datatype features inside HDF5 so that complicated selection tests are ensured to be handled by HDF5. This check-in reflects this.
* [svn-r15597] Snapshot version 1.8 release 1 (snap3)HDF Tester2008-09-086-19/+19
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* [svn-r15594] Purpose: Add new Fortran DEF file to Windows DLL projectScott Wegner2008-09-051-4/+4
| | | | | | | | Description: All of the Windows-specific Fortran DLL code has been moved to a new file, hdf5_fortrandll.def. This file needs to be added to the Windows hdf5_fortrandll project link properties. Tested: Vs2005 & IVF9.1 on WinXP
* [svn-r15589] Purpose: Add new h5repack tests to WindowsScott Wegner2008-09-031-1/+5
| | | | | | | | Description: New h5repack tests were added in revision 15551 and 15557, and also the syntax of one test was changed. This was causing errors on Windows. This checkin should fix those errors. Tested: VS2005 on WinXP
* [svn-r15583] Purpose: Add Windows Fortran DLL export code to separate DEF file.Scott Wegner2008-09-0316-1744/+524
| | | | | | | | | | Description: In in Fortran source code, there was a great deal of code that was necessary for Windows DLLs, and ignored for others systems. To remove some of the bloat in the source code, we moved these definitions into separate *.def file, which will be used on by the Windows DLL project. Tested: VS2005 on WinXP Note: The Windows project file will still need to be edited-- I will check that in soon.
* [svn-r15581] Added script to build h5perf_serial in standalone mode.Christian Chilan2008-09-022-0/+29
| | | | Tested on kagiso, smirom, and linew.
* [svn-r15567] Snapshot version 1.8 release 1 (snap2)HDF Tester2008-09-019-19/+27
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* [svn-r15562] Added support for serial prefix HDF5_PREFIX.Christian Chilan2008-08-292-20/+14
| | | | Tested on kagiso, smirom, and linew.
* [svn-r15560] new feature for h5repack (alignment)Pedro Vicente Nunes2008-08-291-0/+2
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* [svn-r15558] 1) There are 2 new command line parameters for h5repack. ↵Pedro Vicente Nunes2008-08-297-27/+188
| | | | | | | | | | | | | | Together they allow a call to H5Pset_alignment to be made -t T, --threshold=T Threshold value for H5Pset_alignment -a A, --alignment=A Alignment value for H5Pset_alignment 2) bug fix the printing of the dataset name was not done for references (verbose mode) tested: windows, linux
* [svn-r15553] Fix potential memory leak in H5E_close_msg_cb.Neil Fortner2008-08-281-1/+4
| | | | Tested: kagiso
* [svn-r15542] Purpose: Add new h5repack test to WindowsScott Wegner2008-08-271-0/+4
| | | | | | | | Description: There was one new h5repack test added recently. This commit also adds it to the Windows test script Tested: VS2005 on WinXP
* [svn-r15536] add a mention to h5repack new featurePedro Vicente Nunes2008-08-261-1/+2
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* [svn-r15533] #1184Pedro Vicente Nunes2008-08-266-33/+323
| | | | | | | | | | | Add a userblock to an HDF5 file during the repack. The user gives give a filename and userblock size as command line parameters to h5repack and the contents of that file are stored in the userblock for the HDF5 file created by h5repack. New flags to handle this -u and -b Tested : windows, linux
* [svn-r15523] Purpose: Backport from trunk-- Fix Windows link dependencies in ↵Scott Wegner2008-08-251-2/+2
| | | | | | | | | | new app_ref DLL project Description: The app_refdll project was set to link with static version of hdf5 and libtest projects, which were causing the build to fail, only in Visual Studio .NET 2003, and was previously overlooked. This corrects those errors. Tested: VS.NET on WinXP
* [svn-r15516] Fix faulty error checking in call to H5I_remove().Neil Fortner2008-08-212-1/+3
| | | | | | Add prototype to the top of app_ref.c to suppress warning. Tested: kagiso
* [svn-r15513] Description:Quincey Koziol2008-08-2198-1535/+1544
| | | | | | | | | | Bring back r15510 & r15512 from trunk: Fix compiler warnings and formatting. Tested on: Mac OS X/32 10.5.4 (amazon) More tests upcoming
* [svn-r15511] bug fixPedro Vicente Nunes2008-08-211-270/+282
| | | | | | | | | when comparing attributes, a type ID was not properly closed solution: close the Id on the iteration and continue instead of goto out of the cycle tested: windows, linux
* [svn-r15508] Scott Wegner2008-08-219-386/+1481
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* [svn-r15507] Description:Quincey Koziol2008-08-213-31/+32
| | | | | | | | | | Bring r15501 back from trunk: Clean up warnings. Tested on: Mac OS X/32 10.5.4 (amazon) Too minor to require h5committest
* [svn-r15506] Change the names of some macros in app_ref.c to prevent ↵Neil Fortner2008-08-211-6/+6
| | | | | | warnings on Windows. Tested: kagiso
* [svn-r15492] Added missing test.Neil Fortner2008-08-201-0/+197
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* [svn-r15490] Description:Quincey Koziol2008-08-191-0/+2
| | | | Update release notes for last bug fix.
* [svn-r15489] Description:Quincey Koziol2008-08-192-1/+15
| | | | | | | | | | | Bring rev. 15488 back from trunk: Fix bug where library could core dump when an invalid location ID was passed to H5Giterate() (and add test for this case). Tested on: Mac OS X/32 10.5.4 (amazon) Too minor to require h5committest
* [svn-r15486] Purpose: Allow library to shut down properly when objects have ↵Neil Fortner2008-08-1966-535/+588
| | | | | | | | | | | | | | | | reference count > 1. Description: Added a new field 'app_count' to H5I_id_info_t struct, to track the reference count on an id due to the application. the old 'count' field tracks the total. Generally any id visible to the application gets placed in app_count. Added app_ref boolean parameter to H5I_inc_ref, H5I_dec_ref, H5I_register, H5I_clear_type, and a few other functions, to specify whether the operation(s) being performed on the id(s) are due to the application (TRUE) or not (FALSE). Test added for this case. Tested: kagiso, smirom, linew (h5committest)
* [svn-r15480] Snapshot version 1.8 release 1 (snap1)HDF Tester2008-08-176-19/+19
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* [svn-r15478] Removed vestigal code from H5SM_delete_from_index() which would ↵Neil Fortner2008-08-171-11/+0
| | | | | | | | | have dereferenced an uninitialized pointer if it had been reachable. Closes bz #1280. Tested: kagiso, smirom, linew (h5committest)
* [svn-r15471] Snapshot version 1.8 release 1 (snap0)HDF Tester2008-08-146-18/+18
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* [svn-r15463] Description:Quincey Koziol2008-08-1211-19/+21
| | | | | | | | Bring revision 15462 (compiler warnings) back from trunk. Tested on: Mac OS X/32 10.5.4 (amazon) w/FORTRAN & C++ (Too minor to require h5committest)
* [svn-r15459] Purpose: Modify the library to take the proper action when ↵Neil Fortner2008-08-1192-104/+236
| | | | | | | | | | | | | | | files with incorrect datatype versions are encountered. Description: The library now recognizes some problems with datatype versions in H5O_decode_helper(), and, if not performing strict format checks, automatically corrects them. Framework added for other message decode routines to automatically correct file errors. Datatype version information added to h5debug. Resolves bz#1236, 1266. Test files with incorrect datatype versions corrected. Tested: kagiso, smirom, linew (h5committest)
* [svn-r15450] Purpose: Fix various problems that were occurring when using ↵Neil Fortner2008-08-079-138/+426
| | | | | | | | | | | | | | mounted files. Description: Moved mount table from top file structure to shared file structure. Moved parent out of mount table and back into top file structure. mounted files can now be accessed from any handle of the parent file. Changes to how files are closed. Stricter cycle checking on mounted files. Removed unused function H5F_has_mount(). Tested: kagiso, smirom, linew (h5committest)
* [svn-r15447] Pedro Vicente Nunes2008-08-072-3/+15
| | | | | | | | | | | bug fix http://bugzilla.hdfgroup.uiuc.edu/show_bug.cgi?id=788 don't print array indices for regions tested: windows, linux
* [svn-r15441] Purpose: Backport from trunk: Bring the Windows H5pubconf.h ↵Scott Wegner2008-08-063-155/+666
| | | | | | | | | | | | | | | | up-to-date Description: This commit is a major update to the Windows-maintained H5pubconf.h file. This file is statically-distributed because Windows cannot generate it dynamically as other platforms do. Previously, our Windows version contained a minimal subset of the macro definitions required. To update, I've gone through each macro (based on kagiso's output), and tested for the correct value on Windows. This allows us to better target code based on feature flags. It should also be easier to update in the future as changes are made to the configure script. This commit also contains one small bug fix in h5ls.c. Some Windows-specific code was missing a local variable definition. The bug went unnoticed because Windows didn't define the feature flag correctly. I've also made changes to the h5vers script. Whenever the version string is incremented (automatically by h5test after a snapshot), the strings in H5pubconf.h will also be updated. Tested: VS2005 on WinXP (32- and 64-bit) VS.NET on WinXP 32-bit h5vers tested under Cygwin
* [svn-r15436] bug fixPedro Vicente Nunes2008-08-061-11/+11
| | | | | | | the compression ratio was being printed for cases where a layout was requested and not a filter tested: windows, linux
* [svn-r15435] Purpose: Update Windows test script for new h5diff option: -cScott Wegner2008-08-062-1/+6
| | | | | | | | Description: A new parameter was added to h5diff recently. We add a new test to the h5diff script, and change the syntax in which h5diff is called from the h5repack test script Tested: VS2005 on WinXP
* [svn-r15434] new file for h5diff testPedro Vicente Nunes2008-08-051-0/+1
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* [svn-r15433] http://bugzilla.hdfgroup.uiuc.edu/show_bug.cgi?id=1170Pedro Vicente Nunes2008-08-0526-294/+570
| | | | | | | | | | | | | Summary: when using h5diff to compare the results of h5repack (or other tools that copy one HDF5 file to another), a new option is needed to allow h5diff to make an "absolute" comparison of the 2 files. This is the "contents" mode explained in the usage below. If this mode is present, objects in both files must match (must be exactly the same). If this does not happen, the tool returns an error code of 1 (instead of the success code of 0) Changes to the h5repack test script: the call to h5diff was changed to include -c (maintaining the previous -q). tested: windows, linux
* [svn-r15424] Description:Scot Breitenfeld2008-07-291-1/+1
| | | | Fixed the error of passing an array to a scalar.
* [svn-r15419] Description:Scot Breitenfeld2008-07-281-1/+1
| | | | | | | | Initialized a string with a space instead of a blank i.e. var = '' is now var = ' ' This fixes a problem with AIX for bug 1252
* [svn-r15416] Description:Scot Breitenfeld2008-07-281-19/+19
| | | | | | | Changed the INTENT for total_error to be consistantly INTENT(INOUT) as noted in bug 1251
* [svn-r15415] Description:Scot Breitenfeld2008-07-281-109/+109
| | | | | | | | | | | | | | | | | Added missing comma, i.e. WRITE(*, "("" subroutine i"" i2.2,""()"")") j should be WRITE(*, "("" subroutine i"", i2.2,""()"")") j etc... as noted in bug 1251 and NAG compiler. Checked the write fix using Sun f95, g95, pgf90, gfortran, ifort, absoft and all gave the correct write output.
* [svn-r15404] Purpose: Code correctionBinh-Minh Ribler2008-07-258-12/+32
| | | | | | | | | | | Description: Accidentally left p_setId in public section in the previous checkin. Moved it to "protected:" section. Platforms tested: Linux 2.6 (kagiso) SunOS 5.10 (linew) FreeBSD (duty)
* [svn-r15401] Purpose: Fix bugBinh-Minh Ribler2008-07-2418-35/+68
| | | | | | | | | | | | | | | | | | | | Description: Changed all subclasses' setId to p_setId and put back setId in IdComponent. p_setId is used in the library where the id provided by a C API passed on to user's application in the form of a C++ API object, which will be destroyed properly, and so p_setId does not call incRefCount. On the other hand, the public version setId is used by other applications, in which the id passed to setId needs to be closed properly by the application, so setId must call incRefCount for the new object to prevent prematurely closing of the id. Platforms tested: Linux 2.6 (kagiso) Still on going with these two platforms, but needed to check in before daily tests start. SunOS 5.10 (linew) FreeBSD (duty)
* [svn-r15398] Added declaration of functions needed for standalone building. Christian Chilan2008-07-231-17/+24
| | | | Tested on kagiso and abe.
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