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* [svn-r22148] Removed incorrect executable svn properties from text, source, ↵Dana Robinson2012-03-2679-0/+0
| | | | in, and HDF5 files.
* [svn-r22145] #Issue 7922 - H5Pset_data_transform had seg fault with some ↵Raymond Lu2012-03-264-36/+349
| | | | | | | | | operations like x*-100. The parser mistaked "-" as substraction. I fixed it and also fixed another problem with some special cases like 100-x and 2/x. This is a merge from the trunk. Tested on jam, koala, and ostrich.
* [svn-r22141] Snapshot version 1.8 release 9 (snap14)HDF Tester2012-03-267-23/+23
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* [svn-r22139] Port r22138 from trunk to 1.8 branch.Neil Fortner2012-03-251-0/+4
| | | | | | Add check for valid number of children in H5B_decode(). See HDFFV-5897. Tested: jam, durandal (too minor for full h5committest)
* [svn-r22137] Purpose:Jonathan Kim2012-03-231-0/+3
| | | | | | | | | | | update for HDFFV-7837 - h5diff: incorrect behavior with exclude-path option when unique object exist only in one file Description: Add the new test output list to test shell script. This is based on the previous commit r22124. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE)
* [svn-r22131] Purpose: Fixed bug 4279Binh-Minh Ribler2012-03-233-14/+126
| | | | | | | | | | Description: Closed various HDF5 objects in DataSet::getInMemDataSize and Attribute::getInMemDataSize to remove some memory leaks. Platforms tested: Linux/32 2.6 (jam) Linux/64 2.6 (amani) SunOS 5.10 (linew)
* [svn-r22124] Purpose:Jonathan Kim2012-03-2211-8/+189
| | | | | | | | | | | | | | | | Fix for HDFFV-7837 - h5diff: incorrect behavior with exclude-path option when unique object exist only in one file Description: If unique objects exists only in one file and try to exclude the unique objects with --exclude-path option, h5diff missed excluding some objects. Fixed to exclude objects correctly in such case. Test cases were added and tagged with jira#. Merged from HDF5 trunk r22114. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22121] Purpose:Jonathan Kim2012-03-2210-1/+64
| | | | | | | | | | | | | | update for HDFFV-7523 JPSS: h5dump fails to open an attribute when using the -a option to specify an attribute with a slash in the name Description: Added capability for "-a" option to show attributes containing "/" by using an escape character. For example, for a dataset "/dset" containing attribute "speed(m/h)", use "h5dump -a "/dset/speed(\/h)" to show the content of the attribute. Merged from HDF5 trunk r22052, r22063, r22108 Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22113] Description:Quincey Koziol2012-03-212-19/+26
| | | | | | | | | | Bring r22112 from trunk to 1.8 branch: Minor code safety issue in test/fheap.c and whitespace in other files. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug (Too minor to require h5committest)
* [svn-r22106] Update linux VM version infoAllen Byrne2012-03-211-14/+14
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* [svn-r22104] Added cross platform example text for new h5dump file optionAllen Byrne2012-03-211-1/+2
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* [svn-r22101] Comment out tests that have issue with the way legacy test ↵Allen Byrne2012-03-201-4/+4
| | | | | | script filters/regex test output. Tested: windows
* [svn-r22099] Add reference file extensions in new tests.Allen Byrne2012-03-204-26/+31
| | | | | Remove "STAR" test as some platforms vary in interpretation. Add new tets to windows legacy test script
* [svn-r22095] Correct test script errorsAllen Byrne2012-03-192-166/+310
| | | | Add new tests to legacy dos script
* [svn-r22093] HDFFV-7931: timezone issueAllen Byrne2012-03-19158-632/+632
| | | | | | Runtime library setting should be to DLL versions for static. Tested: windows
* [svn-r22092] Reorder tools/h5jam/testfiles orderingAllen Byrne2012-03-191-1/+1
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* [svn-r22088] HDFFV-7957(7958): Correct use of ERROR_STACK for h5dump and tools.Allen Byrne2012-03-1921-155/+450
| | | | Tested: local linux after week in trunk
* [svn-r22086] Snapshot version 1.8 release 9 (snap13)HDF Tester2012-03-197-23/+23
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* [svn-r22085] Update legacy project files for new dump sourceAllen Byrne2012-03-166-57/+115
| | | | Update pubconf to synch with latest options
* [svn-r22083] I updated the item for Issue 7756.Raymond Lu2012-03-161-2/+3
| | | | No test is needed.
* [svn-r22073] Port r22072 to 1.8 branchNeil Fortner2012-03-155-12/+158
| | | | | | | | | | | | | | | | Purpose: Fix rare corruption bug (HDFFV-7879) Description: When using the new object header format, it was possible for corruption to occur if the first object header chunk changed size such that the lenght of the "chunk 0 size" field changed. This only occurred if there were messages that had not been decoded. The original algorithm that changed the object header chunk size marked all messages as dirty, causing those that had not been decoded to have both the raw and native form invalidated. Changed the algorithm to avoid marking messages dirty and added assertions to catch the case where messages are dirtied without being decoded (or recently created) first. Tested: jam, koala, ostrich (h5committest), durandal
* [svn-r22071] Port r22070 to 1.8 branchNeil Fortner2012-03-153-21/+235
| | | | | | | | | | | | Purpose: Fix rare corruption bug Description: When using the new object header format and adding an attribute with a size near 64K, it was possible for file corruption to occur. This happened only if the first object header chunk was smaller than 256 bytes and then grew to larger than 64K after the attribute was added. Tested: ostrich, jam, koala (h5committest), durandal
* [svn-r22060] Description:Quincey Koziol2012-03-131-1/+1
| | | | | | | | Change to use versioned API call, to avoid problems when defaulting to older AI versions. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug
* [svn-r22059] Description:Quincey Koziol2012-03-134-13/+24
| | | | | | | | | Bring r22058 from trunk to 1.8 branch: Better fix for zero-sized dataset error (r22053). Tested on: Mac OSX/64 10.7.3 (amazon) w/debug & parallel
* [svn-r22057] Purpose:Jonathan Kim2012-03-1210-27/+97
| | | | | | | | | | | | | | Fix for HDFFV-7835 h5diff: incorrect result for comparing the two same type symlinks as dangling links. Description: When two symbolic dangling links are compared with --follow-symlinks option, the result should be same. It works for comparing two files, but didn't work for comparing two objects. Test cases were added and tagged with jira#. Merged from HDF5 trunk r22038. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows (32-LE cmake), Cmake (jam)
* [svn-r22055] Description:Quincey Koziol2012-03-124-476/+508
| | | | | | | | | | | | Bring r22053 from trunk to 1.8 branch: Correct corner case for creating a contiguous dataset with a zero-sized dataspace, when the allocation time is set to early. Also clean up a few compiler warnings in the dataspace code. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug & parallel
* [svn-r22050] Allen Byrne2012-03-121-0/+1
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* [svn-r22048] Add h5dump issues fixedAllen Byrne2012-03-121-0/+14
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* [svn-r22045] HDFFV-7957-7958:Allen Byrne2012-03-125-34/+84
| | | | | Add tools error stack and check return from H5Dreference call. Tested: trunk
* [svn-r22044] HDFFV-7957-7958:Allen Byrne2012-03-121-0/+4
| | | | | Add tools error stack and check return from H5Dreference call. Add missing file update
* [svn-r22043] HDFFV-7839: Dangling link should not display errorAllen Byrne2012-03-1219-71/+215
| | | | | | | If a link is specified on the command with the -d option, call the handle_links function on error from the H5Dopen command. Updated test file results with error stack when link not found. Tested: trunk
* [svn-r22041] Snapshot version 1.8 release 9 (snap12)HDF Tester2012-03-127-23/+23
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* [svn-r22039] Fix for HDFFV-7878.Larry Knox2012-03-092-2/+8
| | | | | | | | | | | gnu-flags Don't add gcc flags for intel compiler even though its version display includes "gcc ". intel-flags Extend intel version to include icc-12*. Tested on jam, koal, ostrich with h5committest. Chedcked in to trnk last week.
* [svn-r22037] Purpose:Jonathan Kim2012-03-091-98/+91
| | | | | | | | | | | | | HDFFV-7602 - GMQS: HDF5 command tools: Provide framework for reusable test files among tools Stage2 working for h5ls tool. Description: Update cmake script to fetch test files from any tools to a test directory and run test in organized manner. Also keep the apperance similiar to shell script for better maintainance. Tested: CMake (Windows and jam)
* [svn-r22031] Purpose:Jonathan Kim2012-03-064-266/+481
| | | | | | | | | | | | | | | | Task for HDFFV-7862 - Select data by chunk direction to improve performance in h5repack Description: h5repack sometimes became very slow when handling big chunked datasets in certain cases. (when chunk boundary doesn't match with a hyperslab boundary.) The main issue was from figuring out a hypeslab without considering chunk boundary to read from and write to such datasets. The update was made to figure out a better hyperslab unit with considering chunk boundary to improve performance for such cases prior to the update. Tested: jam (linux32-LE), koala (linux64-LE), ostrich (linuxppc64-BE), tejeda (mac32-LE), linew (solaris-BE), Windows
* [svn-r22025] Cleanup compiler warnings.Allen Byrne2012-03-0513-2172/+1606
| | | | | | Add HD prefix to tools library based tests. Cleaned allocation/free in tests. Tested: local linux/ h5committetest
* [svn-r22023] Snapshot version 1.8 release 9 (snap11)HDF Tester2012-03-057-22/+22
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* [svn-r22014] Add USER_BLOCK change and highlight whitespace changes for ↵Allen Byrne2012-03-021-1/+3
| | | | h5dump refactoring
* [svn-r22013] HDFFV-7560:Allen Byrne2012-03-02192-13809/+25772
| | | | | | | | | | Merge 1.8 and h5dump/tools and tests based on tools library from trunk. Reduced warnings. HDFFV-7949: Remove duplicated functions in h5ls Tested: local linux,h5committest
* [svn-r22000] Updated for the changes made to IBM configure.Albert Cheng2012-02-281-5/+5
| | | | Also update the IBM tested platform information.
* [svn-r21998] Feature: HDFFV-7793: AIX Fortran and C++ Compiler version ↵Albert Cheng2012-02-282-40/+66
| | | | | | | | | | | information Added code to display the version information of XL fortran and C++ compiler version information. (This is just a quick fix for the AIX XL compilers. The overall algorithm of compilers version information needs an overhaul.) Tested: ADA machine. (No committest because the changes applied to AIX XL compilers only.)
* [svn-r21961] Snapshot version 1.8 release 9 (snap10)HDF Tester2012-02-207-23/+23
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* [svn-r21948] Description:Quincey Koziol2012-02-161-1/+1
| | | | | | | | | | Bring r21947 from trunk to 1.8 branch: Catch a missing FUNC_ENTER that escaped the recent pass through the source code. Tested on: None, too minor, just eyeballed.
* [svn-r21935] Description:Quincey Koziol2012-02-133-30/+30
| | | | | | | | | | | | | | Bring r21932 & r21934 from trunk to 1.8 branch: r21932: Correct misnamed FUNC_ENTER macro. r21934: Remove some leftover uses of the __FUNCTION__ macro, replacing them with FUNC macro, as used everywhere else. Tested on: Mac OSX/64 10.7.3 (amazon) w/debug & production
* [svn-r21927] Updated RELEASE.txt with HDFFV-7780 information.Dana Robinson2012-02-101-0/+3
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* [svn-r21926] Merged fix for HDFFV-7780 (incorrect Windows thread creation ↵Dana Robinson2012-02-102-3/+16
| | | | | | function) from trunk (changeset 21816). Tested on 64-bit Windows 7. This has baked in the trunk since Dec 5 with no issues.
* [svn-r21925] Description:Quincey Koziol2012-02-10243-6797/+5609
| | | | | | | | | | | | | | Bring r21919-21924 from trunk to 1.8 branch: cleanup FUNC_ENTER macros, etc. Also removed Subversion mergeinfo tags from a few directories and files. These are artifacts from non-root merges using pre-1.6 Subversion clients. (This should fix the problem of unchanged directories looking "changed" during checkins.) Tested on: Mac OSX/64 10.7.3 (amazon) w/debug & production (daily tested on trunk)
* [svn-r21918] Description:Quincey Koziol2012-02-083-3/+3
| | | | | | | | | | | | Bring r21917 from trunk to 1.8 branch: Bring [spirit of] r20393 from coverity branch back to trunk: Move initialization ocrt_info.new_obj = NULL; before FUNC_ENTER_NOAPI -- gh Tested on: Mac OS X/64 10.7.3 (amazon) w/debug, production & parallel (too minor to require h5committest)
* [svn-r21914] Issue 7829 - data conversion from "long double" to integers ↵Raymond Lu2012-02-071-0/+12
| | | | | | | | failed on Ubuntu with optimization. I documented it as a known solution and provided users a way to lower down the optimization. No test.
* [svn-r21912] Issue 7756 - Creating a dataset in a read-only file caused seg ↵Raymond Lu2012-02-073-1/+80
| | | | | | fault when the file is closed. I fixed the problem by putting a condition check early in H5O_create of H5O.c. The old code checked it too late, not until a file space is created. I added a test case in tfile.c to check the creation of group, dataset, attribute, and datatype. Tested on jam - I've tested the same changes in the trunk with h5committest.
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