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* [svn-r16546] Moved long_long comment to correct location under bugs fixed ↵Allen Byrne2009-03-051-3/+3
| | | | since section.
* [svn-r16544] Added text that long_long macro was removed. This should have ↵Allen Byrne2009-03-051-0/+3
| | | | been added with r16490.
* [svn-r16541] Move variable declaration to the top of the block in ↵Neil Fortner2009-03-041-1/+2
| | | | | | H5G_dense_iterate Tested: Fedora 10 (too minor for full committest)
* [svn-r16538] Added more test case for bypassing the cache. In ↵Raymond Lu2009-03-031-17/+49
| | | | | | | | | | test_big_chunks_bypass_cache, test the correctness of the data when the fill value is defined or not. The library should let the chunks bypass the cache depending on the size of the chunks and whether to write fill value to the chunks. Tested on jam - simple change.
* [svn-r16536] Description:Quincey Koziol2009-03-023-9/+11
| | | | | | | | | | | Bring v16532 back from trunk to v1.8 branch: Pass the chunk "user data" to H5D_chunk_unlock(), so that chunks with an address already aren't reallocated. Tested on: FreeBSD/32 6.3 (duty) in debug mode (h5committest not needed here, performed on trunk)
* [svn-r16526] Snapshot version 1.8 release 2 (post7)HDF Tester2009-03-027-22/+22
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* [svn-r16524] Purpose: Fix bugs related to H5Dset_extent and fill valuesNeil Fortner2009-02-275-246/+362
| | | | | | | | | Description: In some situations it was possible for the fill value to not be written to parts of a chunked dataset, particularly when extending and/or shrinking. Prior to the fix for the chunk cache (1015) these bugs would have been exceedingly rare. Tested: jam, smirom, linew (h5committest)
* [svn-r16522] Changed windows batch file due r16519 and r16520. As all ↵Allen Byrne2009-02-261-2/+2
| | | | | | | windows OS are always LE on all platforms, simply added le to the two locations where these files are used. Tested: Vista 32 VS2008
* [svn-r16520] one file escape deletion from previous check inPedro Vicente Nunes2009-02-261-22/+0
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* [svn-r16519] merge 16518 from trunkPedro Vicente Nunes2009-02-2649-51/+186
| | | | | | have 2 expected outputs for 2 h5ls runs depending if run on a big or little endian machine. Configure.in was modified to export a variable carrying endianess information to testh5ls.sh. This script then compares the current run with 2 expected outputs, one for a big-endian machine (linew was used to generate the output), other for little endian (jam was used to generate the output) the way h5ls prints types, it starts searching for NATIVE types first. One solution would be h5ls not to detect these native types, using for example the same print datatype function that h5dump does, that would make the output look the same on all platforms ("32-bit little-endian integer" would be printed instead). Drawback, this "native" information would not be available. Other solution is to have not one but 2 expected outputs and make the shell script detect the endianess and compare with one output or other tested: jam, linew
* [svn-r16515] To improve the performance of querrying the info of a link(bug ↵Raymond Lu2009-02-241-45/+66
| | | | | | | | | | | #1404). When the index was set to creation order in querry function but there's no creation order indexed in the file, the library tried to build and sort a table of all links. To optimize it, let the library use the B-tree for names of links. Tested with h5committest.
* [svn-r16512] merge 16511 from trunkPedro Vicente Nunes2009-02-232-8/+8
| | | | | | | bug fix: TESTING2 macro introduced recently for the test suite (it adds an extra space at the beginning of output, for indentation) was already available for HL and caused compilation problems on AIX. Replaced the name with TESTING_2 tested: h5committest
* [svn-r16505] Maintenance: Fixed a typo discovered while compiling on AIX systemElena Pourmal2009-02-201-1/+1
| | | | Platforms tested: Mac OSX and AIX (by Ed) (minor fix)
* [svn-r16503] merge 16502 from trunkPedro Vicente Nunes2009-02-201-4/+13
| | | | | bug fix: a comma accidently left on a conditional typedef was causing compilition error on AIX tested: linux
* [svn-r16500] Description:Quincey Koziol2009-02-191-1/+7
| | | | | | | | | | Bring r16499 back from trunk: Cache chunk info for newly created chunk. Tested on: FreeBSD/32 6.3 (duty) (Tests included in upcoming revise_chunks branch changes)
* [svn-r16495] Description:Quincey Koziol2009-02-193-169/+81
| | | | | | | | | | | Bring r16488 back from trunk: Clean up code and eliminate resource leaks. Also avoid "null" I/O when chunk doesn't exist and we can skip it. Tested on: Mac OS X/32 10.5.6 (amazon) (too minor to require h5committest)
* [svn-r16494] Description:Quincey Koziol2009-02-1910-147/+183
| | | | | | | | | | | Bring r16483 back from trunk: Clean up (i.e. remove) more internal calls to H5E_clear_stack(), along with some other minor code cleanups. Tested on: Mac OS X/32 10.5.6 (amazon) (too minor to require h5committest)
* [svn-r16493] revert gcc PROD_CFLAGS to "-O", which was incorrectly changed ↵Allen Byrne2009-02-191-1/+1
| | | | by rev 16490.
* [svn-r16490] Fixed bug #1459 by eliminating the macro long_long and ↵Allen Byrne2009-02-1844-585/+530
| | | | | | | | | replacing all instances with long long. Tested: h5comittest fedora 10 x64 XP32, VNET
* [svn-r16487] Checkin for moving messages forward into continuation message:Vailin Choi2009-02-164-10/+251
| | | | | | src/H5Oalloc.c, test/ohdr.c, toshm.c Fixed couple of problems in src/H5Odbg.c. h5committested.
* [svn-r16486] Snapshot version 1.8 release 2 (post6)HDF Tester2009-02-157-22/+22
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* [svn-r16481] Purpose: Improve chunk cacheNeil Fortner2009-02-126-16/+250
| | | | | | | | | | | Description: The meaning of the "nbytes" field in H5D_rdcc_t was not clear, and some places assumed it was the maximum size of the chunk cache, while some assumed it was the current size of the chunk cache. The end result was that only 1 chunk could be held in cache at a time. This field has been replaced by "nbytes_max" and "nbytes_used". Performance of cached I/O should improve greatly. Tested: jam, smirom (h5committest)
* [svn-r16478] Purpose: Fix problem with opening an attribute multiple times ↵Neil Fortner2009-02-128-21/+186
| | | | | | | | | | | | | | | through multiple file handles. Description: An attribute's "oloc" field which specifies the file it resides in was located in the attribute's "shared" structure. So when an attribute was opened multiple times all of the handles for that attribute pointed to the same file id, even if different file id's were used to open the different handles for the attribute. The "oloc" has been moved to the top level H5A_t struct. Tested: jam, smirom (h5committest)
* [svn-r16476] Purpose: Fix rare error when adding a new object header messageNeil Fortner2009-02-123-57/+212
| | | | | | | | | | | | Description: Since the new object header format, it has been possible for a situation to be created where none of the messages are large enough to hold a continuation message and there are no null messages to merge with. This makes it impossible to add a new object header chunk. This case will now be handled by moving every message in the last chunk to the newly allocated one, except for null messages which are deleted. Tested: jam, smirom (h5committest)
* [svn-r16474] Purpose: fix problems related to 'self-referential' attributesNeil Fortner2009-02-1237-153/+352
| | | | | | | | | | | | Description: When an attribute was created with a datatype or dataspace that was shared in the same object header that the attribute was in, the attribute could not be deleted. Changes made to ensure that the attribute can be deleted both when the attribute is in the object header and when it is shared in the heap. Object header message decode routines now take an "open_oh" parameter to enable them to avoid opening the same object header twice. Tested: jam, smirom (h5committest)
* [svn-r16471] Change H5Dopen to H5Dopen2 - fixes compile error - too many ↵Larry Knox2009-02-121-1/+1
| | | | arguments for H5Dopen1 when using v1.6 compatible flag. Trivial change, tested on smirom and jam.
* [svn-r16470] Added two new test cases for compound types to batch file per ↵Allen Byrne2009-02-111-0/+7
| | | | | | | script file changes in rev #16463. Tested: XP32, XP64 - VNET, VS2005
* [svn-r16467] Performance Improvement(bug #1450). When a chunk is bigger ↵Raymond Lu2009-02-114-18/+309
| | | | | | | | | | than the cache size and isn't allocated on disk, the library still loaded it in the cache, which is redundant. I changed it to bypass the cache and added a test in dsets.c. Tested on jam and smirom.
* [svn-r16463] merge from trunkPedro Vicente Nunes2009-02-1111-9/+175
| | | | | | | | | | | | | | | | | | | | Bug fix: for compound types, the not comparable test for members was not done Solution: for compound types, recursively apply that check Two new cases are added 1) the compound type has a different number of members. Message printed is <obj1> has X members <obj2> has Y members Where X and Y are the number of members of each compound type being compared 2) the compound type has not comparable types (for example a double and an int at the same index) In this case the message Comparison not possible: object1 is of class1 and object2 is of class2 Is replaced with Comparison not possible: object1 has a class1 and object2 has a class2 Modified the test generator program to have these 2 cases Added a shell run for these 2 cases Tested: h5committest
* [svn-r16460] Maintenance: Brought VMS test script for h5copy up-to-date. Elena Pourmal2009-02-102-9/+50
| | | | | | | Added h5copy testing to the build script. Platforms tested: New script on ALPHA Open VMS server; build script will be tested tonight.
* [svn-r16459] Maintenance: installation script had a typo; fixed.Elena Pourmal2009-02-101-1/+1
| | | | Platforms tested: Alpha VMS server
* [svn-r16458] Maintenance: One of the h5diff tests failed due extra line that ↵Elena Pourmal2009-02-101-1/+1
| | | | | | | | | | system adds to the output. I added /comment_delim qualifier to the diff command to pacify the test script. Platforms tested: Alpha VMS server
* [svn-r16456] Maintenance: Brought h5repack and h5diff test scripts up-to-date.Elena Pourmal2009-02-093-18/+14
| | | | | | | Modified build script to reflect the change. Platforms tested: tested tools scripts on the VMS server; build script will be tested tonight.
* [svn-r16452] Repaired intermittant failure of the t_cache test in testpar.John Mainzer2009-02-061-7/+147
| | | | | | | | | | | | | | | | | | | | | | | | | The failure was caused by some over active sanity checking code in unlock_entry(). In essence the code did not consider the possibility that under certain, very unusual circumstances, an entry could be flushed to disk during the H5AC_unprotect() call. Instead, it simply failed if a dirty entry was marked clean after the call to H5AC_unprotect(). This bug in the test code was exposed by recent changes to the default cache configuration made as part of the "metadata blizard" bug fix. Fixed the bug by adding code to detect when an entry is flushed during the call to H5AC_unprotect(), and not trigger a failure if a dirty entry is marked clean after a call to H5AC_unprotect() if the entry has been flushed. In passing also found and fixed another test bug in which expunged entries were erroneously marked as dirty in the test code's independant register of entry status. Tested parallel on Phoenix (AMD64 Linux) and Jam. No further testing, as the fix was tested extensively prior to checkin on the 1.9 branch.
* [svn-r16450] bug fix: compare the return value of H5Tequal with TRUEPedro Vicente Nunes2009-02-061-2/+2
| | | | tested: h5committest
* [svn-r16443] Update windows batch file to match *nix script due to rev 16351Allen Byrne2009-02-051-36/+82
| | | | | Tested:  XP 32 VNET
* [svn-r16440] Description:Quincey Koziol2009-02-052-46/+203
| | | | | | | | | | | Bring r16435 from revise_chunks branch back to 1.8 branch: Expand object copy tests for chunked datasets to include 1-D datasets with an unlimited dimension. (Fix typo in comment for test/links.c) Tested on: FreeBSD/32 6.3 (duty) in debug mode (more thoroughly tested already on revise_chunks branch)
* [svn-r16437] merge from trunkPedro Vicente Nunes2009-02-0515-15/+15
| | | | | bug fix: typo in usage message tested: linux
* [svn-r16432] merge from trunkPedro Vicente Nunes2009-02-051-1/+1
| | | | | | | Uncomment a h5cleanup() call previously accidently left commented Tested: windows
* [svn-r16427] Purpose: Fix Windows install script to include missing tool ↵Scott Wegner2009-02-041-0/+6
| | | | | | | | | | binaries Description: A user discovered that the HDF5 1.8.2 Windows release binaries were missing a few of the HDF5 tools. This is due to the Windows install script, which simply didn't include them. This commit fixes the install script to include h5copy, h5mkgrp, and h5stat Tested: VS2005 w/ WinXP, build and install only
* [svn-r16424] Purpose: Remove old Fortran source file from Windows projects.Scott Wegner2009-02-042-26/+24
| | | | | | | | Description: In svn rev. 16197, H5fortran_flags.f90 was removed from HDF5. This checkin removes references from our Windows projects, and will allow us to successfully build HDF5 Fortran on Windows. Tested: VS2005 w/ IVF 9.1 on WinXP
* [svn-r16422] bug fix: a open call was not made the expected FAPLPedro Vicente Nunes2009-02-041-9/+11
| | | | tested: windows, linux (split, sec2)
* [svn-r16420] merge from trunkPedro Vicente Nunes2009-02-042-28/+41
| | | | | | | | | | | | | | | | | | | | | | #1449 Change set_extent test to use standard standalone test framework Call h5_fixname (with an array of test filenames) for generating the filename to create and then call h5_cleanup() when the tests pass, to delete the files created and close the FAPL from h5_fileaccess(). Defined a macro #define TESTING2(WHAT) {printf(" Testing %-62s",WHAT); fflush(stdout);} Similar to TESTING, except that it has a initial indentation space. The effect is for nested loop tests Testing with old file format: Testing with fill value, no compression PASSED tested: windows, linux
* [svn-r16418] Description:Quincey Koziol2009-02-041-83/+69
| | | | | | | | | | | Bring r16417 from trunk to 1.8 branch: Bring closer to standard standalone test format, add checks for using the latest file format and close dataset ID leaked. Tested on: FreeBSD/32 6.3 (duty) (too minor to require h5committest)
* [svn-r16415] Description:Quincey Koziol2009-02-032-15/+29
| | | | | | | | | | | | Bring r16414 from trunk into 1.8 branch: Eliminate some more calls to H5E_clear_stack() from within library code. Clean up some warnings & comments also. Tested on: Mac OS X/32 10.5.6 (amazon) (Too minor to require h5committest)
* [svn-r16411] testh5ls.bat - added tests to match script file from rev 16310Allen Byrne2009-02-034-6/+18
| | | | | | | | h5repack.bat - added test to match script file from rev 16402 set_extent.vcproj - added WS2_32.lib for change to set_extent from rev 16406 Tested: Vista32, XP32, XP64 using VNET, VS2005 VS2008
* [svn-r16408] Description:Frank Baker2009-02-031-1/+1
| | | | Update source code copyright to include 2009.
* [svn-r16406] merge 16405 from trunkPedro Vicente Nunes2009-02-031-61/+66
| | | | | | | | | | | | | | | | #1449 Change set_extent test to use standard standalone test framework use a fapl obtained by h5_fileaccess to the call of H5Fcreate and redo the test calls with h5_reset(); fapl = h5_fileaccess(); nerrors += do_ranks( fapl ) < 0 ? 1 : 0; nerrors += test_external( fapl ) < 0 ? 1 : 0; nerrors += do_layouts( fapl ) < 0 ? 1 : 0; tested: windows, linux
* [svn-r16402] Description:Quincey Koziol2009-02-034-1/+7
| | | | | | | | | | | Bring r16401 back from trunk: Correct error introduced in r16353 with layout version, and add test so it gets caught earlier. Tested on: FreeBSD/32 6.3 (duty) Too minor to require h5committest
* [svn-r16400] Description:Quincey Koziol2009-02-023-24/+21
| | | | | | | | | | Bring r16399 back from trunk: Remove some internal calls to H5E_clear_stack(). Tested on: FreeBSD/32 6.3 (duty) Too minor to require h5committest
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