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* [svn-r24728] Description:Quincey Koziol2014-02-2115-218/+231
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bring r24726 & r24727 from trunk to 1.8 branch: Description: Revert some earlier usage of strncpy, which was incorrect. Bring Coverity changes from branch back to trunk: r20821: Use HDstrncpy. --gh (Fixed already, with strdup) r20822: (Not merged, incorrect use of HDstrncpy()) r20823: (Not merged, incorrect use of HDstrncpy()) r20824: Maintenance: Bug fix: addressed CID 666. Value stored at *expression_len should be used in the call to HD5packFstring to avoid overflow (and unnecessary arithmetic calculation and casting) r20825: Issue 642: Added check for error and handler with print to stderr and exit. r20826: Undo revision 20818, as that issue has already been fixed in the 1.8 branch and trunk (but not coverity branch) r20827: (Not merged, incorrect use of HDstrncpy()) r20828: Use HDstrncpy. --gh (Corrected use of strncpy()) r20829: Check return of H5Lget_val(print_udata->fid, path, targbuf, linfo->u.val_size + 1, H5P_DEFAULT) and if error set trgbuf[0] to 0. Check if H5Lunpack_elink_val(targbuf, linfo->u.val_size, NULL, &filename, &objname) was successful and allow print. Otherwise filename and objname are not created. (init those to NULL) r20830: resolved coverity issues 939, 940, 941, 944, and 947. all were complaints about use of sprintf, and in all cases, the buffers used were large enough for all eventualities. Resolved issue by replacing calls to sprintf with calls to snprintf. r20831: Maintenance: Addressed CID 852 Replaced sprintf with snprintf r20832: Purpose: Fix valgrind issues with hl/examples/ex_image2 Description: Modified hl/examples/ex_image2 to free global "gbuf" before exit. Tested on: Mac OSX/64 10.9.1 (amaon) w/C++, FORTRAN & Threadsafety (too minor to require h5committest)
* [svn-r24721] Set NSIS display nameAllen Byrne2014-02-181-0/+1
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* [svn-r24720] bring r24709 from trunk:Mohamad Chaarawi2014-02-1848-347/+407
| | | | | | | rename H5V to H5VM since H5V is needed in the fastforward project for view objects. The addition of view objects in the fastforward project is expected to be brough into the trunk sometimes in the future, which is why we need to make this change.
* [svn-r24699] Port r24463 from trunk to 1.8 branch.Neil Fortner2014-02-101-1/+1
| | | | | | | | | Tested: jam, ostrich, platypus (h5committest, apparent system issue on koala) Log from r24463: Issue 8484 - Segfault during H5Fopen of corrupt file. I put a condition check to make sure a pointer isn't NULL. Tested on jam - very simple change.
* [svn-r24684] Add IF SHARED block around Windows PDB file generation command.Allen Byrne2014-02-047-16/+23
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* [svn-r24680] Remove acknowledgment file from install.Allen Byrne2014-02-0310-670/+109
| | | | | | | Remove obsolete CPack.cmake file. Merge h5repack and h5mkgrp test folder changes from trunk. Tested: local linux
* [svn-r24672] Update document with ctest script changes.Allen Byrne2014-01-311-115/+198
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* [svn-r24654] HDFFV-8640: Remove XLATE_UTILITYAllen Byrne2014-01-2858-224/+3217
| | | | Update tools testfiles
* [svn-r24653] HDFFV-8572: test/testhdf5.c main() should not return number of ↵Albert Cheng2014-01-271-1/+6
| | | | | | | | | errors Solution: testhdf5 now exits EXIT_SUCCESS(0) if no errors, else EXIT_FAILURE(1). Tested: Jam only since it is a trivial fix.
* [svn-r24651] Merged changes in the fortran directory from the trunk into the ↵Scot Breitenfeld2014-01-2712-57/+67
| | | | | | | | branch, svn merge -r23351:24650 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran . Tested: jam (gcc, intel), koala (gcc)
* [svn-r24640] Add SUN specific block skipping.Allen Byrne2014-01-221-0/+7
| | | | Tested: emu
* [svn-r24637] Add SUN if blocksAllen Byrne2014-01-211-1/+8
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* [svn-r24626] Correct numberingAllen Byrne2014-01-141-8/+8
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* [svn-r24625] Edited the Preconditions section. There were two Notes sections ↵Mark Evans2014-01-141-22/+23
| | | | at the end of the section.
* [svn-r24618] Changed --old to --script as directed by Allen.Albert Cheng2014-01-071-4/+4
| | | | | Tested: jam (only verify help message is correct and --script is invoked correctly.)
* [svn-r24615] Feature: HDFFV-8336Albert Cheng2014-01-061-2/+119
| | | | | | | | | | | | Changed to use the quick steps described in INSTALL_CMake.txt. Previous version is available by --old. Added a help page to explain how to use. Added a fix to figure out the current HDF5 version and use that to find the correct file for install. (Still need to figure out the platform name.) Tested: Jam and Platypus. Both failed in the installed steps because the Cmake produced HDF5-1.8.13-Linux.sh even though the version number is 1.8.13-snap3. Committed it so that Allen can fix the version number error.
* [svn-r24614] Bring 24612 from trunk:Mohamad Chaarawi2014-01-063-28/+30
| | | | | | | | fix bugs in parallel tests exposed in corner cases when running with 1 or 2 processes. First bug is in testpar/t_mdset.c, where the test reports an error in addition to skipping the test if there are less than three procs. Fix to just skip the test. Second bug is in testpar/t_dset.c in actual_io_mode tests, where incorrect expected value for IO mode was set if the number of procs running the test is 1. tested with h5committest.
* [svn-r24599] Merged /trunk:r24598 Mohamad Chaarawi2013-12-301-48/+42
| | | | | | | | | | | allocate and use the H5AC_aux_t struct even if num_procs == 1. This was a bug exposed by running a single process with a program that generates lots of dirty metadata that needs to be flushed. --This line, and those below, will be ignored-- _M . M src/H5AC.c
* [svn-r24512] I updated the path of ZLIB.Raymond Lu2013-12-091-1/+1
| | | | Tested on VMS.
* [svn-r24511] I updated the path of ZLIB.Raymond Lu2013-12-091-1/+1
| | | | Tested on VMS.
* [svn-r24507] Updated RELEASE.txt with big test changes.Dana Robinson2013-12-061-1/+2
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* [svn-r24506] Merge of r24358 from trunk. Makes the big test aware of the ↵Dana Robinson2013-12-061-149/+171
| | | | | | | | | | | | | | | HDF5_DRIVER environment variable. Fixes HDFFV-8554. Tested on: 32-bit LE linux (jam) 64-bit LE linux (koala) 64-bit BE linux (ostrich) 64-bit Windows 7 with VS 2010 On all platforms, the big test was run with the environment variable set to all supported VFDs.
* [svn-r24479] Description:Quincey Koziol2013-11-303-148/+153
| | | | | | | | Fix ph5diff worker command handling so it can correctly respond to situations where there's no work to perform. Also, a few minor code cleanups. Tested on: Mac OSX/64 10.9.0 (amazon) w/parallel
* [svn-r24477] Description:Quincey Koziol2013-11-308-28/+29
| | | | | | | | | | | Bring r24476 from trunk to 1.8 branch: Remove duplicate "intent" flags from top & shared file structures, leaving them only in the shared file structure. Tested on: Mac OSX/64 10.9.0 (amazon) w/gcc 4.8, both parallel & serial (too minor to require h5committest)
* [svn-r24468] tfilters.h5 was created and checked in on 21 Feb 05, rev 10060, ↵Allen Byrne2013-11-263-3/+3
| | | | | | | | and never regenerated. The code for scaleoffset continued to change and the number of params for scaleoffset changed from 7 to 20 on the checkin of 23 Mar 05, rev 10384. The h5dump tests only looked at headers and never the data. Data reads would fail with invalid number of params (7 expected 20). Regenerated file and replacement ddls updated. New h5dump test will be added to read the data.
* [svn-r24466] Snapshot version 1.8 release 13 (snap2)HDF Tester2013-11-256-20/+20
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* [svn-r24464] Changed an H5FL_MALLOC call to H5MM_calloc to fix a very small ↵Dana Robinson2013-11-231-1/+1
| | | | | | | | | | | | memory leak when the thread-safe version of the library is built. Part of HDFFV-8518. Tested on: 32-bit LE linux (jam) with threadsafe and callstack enabled. (very minor change)
* [svn-r24456] Correct typoAllen Byrne2013-11-151-1/+1
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* [svn-r24455] Add IF block to not override user set pathAllen Byrne2013-11-151-1/+3
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* [svn-r24453] Add IF block around apple CPack Bundle commandsAllen Byrne2013-11-151-17/+19
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* [svn-r24438] Issue 8147 - clang's -fcatch-undefined-behavior exposed ↵Raymond Lu2013-11-131-4/+43
| | | | | | undefined behavior in the alignment detection algorithm for integers in H5detect.c. Quincey decided to solve it in two steps. First, catch illegal instruction signal in the original algorithm. Second, use POSIX __alignof function to detect alignment if it's available. This checkin is the first step. I merged the change from the trunk. Tested on wren, jam, ostrich, platypas, and koala.
* [svn-r24433] Update examples package install location and text filesAllen Byrne2013-11-124-294/+331
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* [svn-r24420] Maintenance after the release: Updated 1.8 history file with ↵Elena Pourmal2013-11-101-0/+592
| | | | the 1.8.12 release information.
* [svn-r24413] Updated information on how to build examples with cmake ↵Allen Byrne2013-11-072-16/+82
| | | | installed binary.
* [svn-r24402] Issue 8528 - H5F_get_objects overfilled the list for object ↵Raymond Lu2013-11-041-1/+1
| | | | | | IDs. I fixed a typo. It caused the PGI compiler on jam to fail tfile.c test. Tested with h5committest.
* [svn-r24395] Missed script file for cleanupAllen Byrne2013-11-011-0/+17
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* [svn-r24393] Cleanup testfiles from scripts. Update lists of files to be ↵Allen Byrne2013-11-0127-17/+318
| | | | | | cleaned. CMake update to clean testfiles. Tested: local cmake, autotools
* [svn-r24391] Issue 8528 - H5F_get_objects overfilled the list for object ↵Raymond Lu2013-11-012-66/+203
| | | | | | IDs. I merged the fix the trunk. I put the safeguard in both H5F_get_objects and H5F_get_objects_cb to prevent overfill the list. I also added test cases in tfile.c. Tested with h5committest on jam, koala, ostrich, and platypus.
* [svn-r24384] Add missing H5_ prefixAllen Byrne2013-10-311-3/+3
| | | | Tested: local linux
* [svn-r24379] Merged r24333 from trunk.Dana Robinson2013-10-312-3/+3
| | | | | | | Added volatile keyword to find_bias() function in H5detect. Fixes HDFFV-8547. Change to H5win32defs.h fixes a minor typo. Tested on 64-bit Visual Studio 2010 / 64-bit Windows 7 (Visual Studio warning)
* [svn-r24377] - Added uint32_t to the list of traceable types.Dana Robinson2013-10-314-6/+7
| | | | | | | | - Fixed a couple of commenting typos in configure.ac. Tested on: 32-bit LE linux (jam) w/ parallel and Fortran These are minor changes, hence the limited testing.
* [svn-r24335] Snapshot version 1.8 release 13 (snap1)HDF Tester2013-10-216-20/+20
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* [svn-r24329] Remove quotes in list addAllen Byrne2013-10-181-1/+1
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* [svn-r24318] Fixed a typo.Raymond Lu2013-10-171-1/+1
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* [svn-r24315] Do not run big test on cygwinAllen Byrne2013-10-172-3/+9
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* [svn-r24308] Issue 8147: CLANG compiler with the options ↵Raymond Lu2013-10-161-0/+7
| | | | | | | | | -fcatch-undefined-behavior and -ftrapv catches some defined behavior in the alignment algorithm of the macro DETECT_I in H5detect.c. I documented it as a known problem. No test is needed.
* [svn-r24290] Description:Binh-Minh Ribler2013-10-1433-127/+192
| | | | | | | | | - Added a lot of documentation to classes for Reference Manual. - Fixed some format inconsistencies Platforms tested: Linux/ppc64 (ostrich) Linux/32 2.6 (jam) Linux/64 2.6 (koala)/PGI compilers
* [svn-r24289] Correct linux shared version numberingAllen Byrne2013-10-141-1/+2
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* [svn-r24288] Snapshot version 1.8 release 13 (snap0)HDF Tester2013-10-146-20/+20
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* [svn-r24282] Add log file aliases and install stepAllen Byrne2013-10-101-2/+28
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