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* [svn-r12910] Description:Quincey Koziol2006-11-146-84/+590
| | | | | | | | | | | More progress toward getting H5Ldelete_by_idx to work fully - can now delete by index in compact group (but not dense groups or "old-style" groups yet). Need to go write a v2 B-tree routine to delete from the B-tree by index before the dense storage will work properly... Tested on: Linux/32 2.6 (chicago) Linux/64 2.6 (chicago2)
* [svn-r12909] Updated MANIFEST, no other changes.James Laird2006-11-141-0/+7
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* [svn-r12908] Description:Quincey Koziol2006-11-141-1/+1
| | | | | | | | | | Replace "//" style comment with "/* */" style comment to fix build on FreeBSD 4.11 (sleipnir) Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir)
* [svn-r12907] Description:Quincey Koziol2006-11-1417-472/+379
| | | | | | | | | Finish refactoring internal link deletion code, to make it possible to wrap up the H5Ldelete_by_idx() coding. Tested on: Linxu/32 2.6 (chicago) Linxu/64 2.6 (chicago2)
* [svn-r12906] Description:Quincey Koziol2006-11-1312-191/+180
| | | | | | | | | | | | | | | | Straighten out some convoluted code when links were being deleted, which could cause the "delete" callback for user-defined links to not get called when the group they were in was deleted. Had to compromise on the "delete" callback though - only calls the callback with the ID for the file the link is in, instead of the group, since the group is being held open upstream in the calling sequence during a group deletion and this prevents a group and its ID from being created. (This could possibly be worked around, but would cause a fair bit of havoc in the code and I'm not entirely certain it's worth it...) Tested on: Linux/32 2.6 (chicago)
* [svn-r12905] Added test/tsohm.c, which was missed in the previous checkin. ↵James Laird2006-11-131-0/+296
| | | | Oops!
* [svn-r12904] Description:Quincey Koziol2006-11-131-5/+5
| | | | | | | Clean up warnings from undefined macros... Tested on: Linux/64 2.6 (chicago2)
* [svn-r12903] Description:Elena Pourmal2006-11-131-1/+1
| | | | | | | Missed another reference to h5repack_refs.c file; fixed Platforms tested VMS server
* [svn-r12902] Checkin of Shared Object Header Message work.James Laird2006-11-1371-558/+4731
| | | | | | | | | | | | This feature is still in progress; Shared Object Header Messages are not complete as a feature and are not thoroughly tested. There are still "TODO" comments in the code (comments with the word "JAMES" in them, so as not to be confused with other TODO comments). Hopefully this checkin will reduce the liklihood of conflicts as I finish implementing this feature. All current tests pass on juniper, copper (parallel), heping, kagiso, and mir.
* [svn-r12901] Description:Elena Pourmal2006-11-131-2/+2
| | | | | | | Modified command file to refelect recent UNIX changes. Platforms treted: VMS server
* [svn-r12900] Description:Elena Pourmal2006-11-132-0/+5
| | | | Maintenance for VMS: added new example file to the command files
* [svn-r12899] Description:Elena Pourmal2006-11-131-0/+1
| | | | Added new file h5_ref2reg.c to MANIFEST
* [svn-r12898] Description:Elena Pourmal2006-11-133-4/+204
| | | | | | | | Added new example for datasets regions; it uses two new functions H5Iget_name and H5Rget_name to get name of the dataset the region refernce points to. Platforms tested: heping
* [svn-r12897] Description:Elena Pourmal2006-11-131-3/+3
| | | | | | | VMS maintenance: added new source files to the command line Platforms tested: Not yet; will do it after this check-in
* [svn-r12896] Description:Quincey Koziol2006-11-1310-801/+879
| | | | | | | | Move compact storage routines into separate file, to make room for internal routines that operate on links within group operations. Tested on: Linux/32 2.6 (chicago)
* [svn-r12895] Description:Quincey Koziol2006-11-1312-335/+866
| | | | | | | | | | | | | Add new H5Lget_val_by_idx() routine & tests. Also includes most of changes for H5Ldelete_by_idx() routine. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
* [svn-r12894] Description:Quincey Koziol2006-11-1213-545/+804
| | | | | | | | | | | | Add H5Lget_name_by_idx routine & tests Move more H5G routines to deprecated API file Tested on: FreeBSD/32 4.11 (sleipnir) w/threadsafe Linux/32 2.4 (heping) C++ & FORTRAN Linux/64 2.4 (mir) w/build-all & enable_compat1.6 AIX/32 5.? (copper) w/parallel & FORTRAN
* [svn-r12893] Description:Quincey Koziol2006-11-111-3/+4
| | | | | | | | Fix error with retrieving names of object references on big-endian platforms. Tested on: AIX/32 5.? (copper)
* [svn-r12892] Description:Quincey Koziol2006-11-115-54/+208
| | | | | | | | | Add H5Rget_name routine and tests... Tested on: FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir)
* [svn-r12891] Description:Quincey Koziol2006-11-111-2/+2
| | | | | | | Correct typo in a few function name macros. Tested on: FreeBSD/32 4.11 (sleipnir)
* [svn-r12890] Description:Quincey Koziol2006-11-119-305/+618
| | | | | | | | | | | | | | | | | Finished implementation of H5Lget_info_by_idx for all cases: old vs. new group formats, compact vs. dense new link storage, increasing vs. decreasing vs. native iteration order. Also, refactor symbol table "foo by index" routines to be more generic and share more code by using a single B-tree iteration callback which makes callbacks to a specific "get <foo>" callback. Tested on: Mac OS X/32 10.4.8 (amazon) FreeBSD/32 4.11 (sleipnir) Linux/32 2.4 (heping) Linux/64 2.4 (mir) AIX/32 5.? (copper)
* [svn-r12888] Pedro Vicente Nunes2006-11-1010-159/+822
| | | | | Introduced the second sweep of the file for a case a reference is present and H5Ocopy was not used. Moved the code from file h5repack_refs.c to h5repack_copy.c and removed the first file
* [svn-r12887] A fix for linking issues.James Laird2006-11-1046-114/+528
| | | | | | | | | | | | Should disable linking against shared libraries in Fortran for compilers that don't support shared libraries. Should also fix problem when the wrong Fortran file extension was specified. If these changes don't solve the Daily Test issues, I'll look at backing out the autotool version change until I have time to fix them. Tested on heping, kagiso, juniper.
* [svn-r12886] Fix (hopefully) for last night's failures on tg-login3.James Laird2006-11-092-23/+32
| | | | | | | | | | | | | | | | It seems that the latest version of libtool is linking against shared versions of the szip libraries in Fortran, rather than the static versions. ifort doesn't support shared libraries at all. To solve the problem, we avoid shared libraries entirely unless we're building shared Fortran libraries ourselves. If libtool always behaves like this now, it may cause similar problems on other machines. If you notice that a machine is breaking when it links against a shared library, let me know. Tested on kagiso; nothing new is broken. If Albert has time this afternoon I'll ask him to test on tg-login3 as well.
* [svn-r12885] Refactored the H5FD_direct_open and H5FD_direct_write. The ↵Raymond Lu2006-11-091-79/+23
| | | | | | | condition for H5_HAVE_DIRECT_ALIGN not defined simply repeated the code above. Merged this part into the code above. No other significant change.
* [svn-r12884] Pedro Vicente Nunes2006-11-084-967/+369
| | | | | | | | | | | | h5repack support for H5Ocopy in the copy of objects. The old method for recreating references was dropped (references recreated in a second traversal of the file) The logic for using H5Ocopy or not is if the input DCPL has filters or non default layout OR these are requested by the user THEN use the old h5repack read / write ELSE use H5Ocopy
* [svn-r12883] Pedro Vicente Nunes2006-11-086-10/+40
| | | | | | h5dump bug 701. Symptom: The creation of a hardlink pointing to the root group "/" causes h5dump to display it as a link pointing to itself. Cure: the root group was not being inserted in the table that keeps track of object names and links. Added a test for this in the test generation program, the creation of a hardlink to the root
* [svn-r12882] Changed bin/reconfigure to work on kagiso as well as on AFS ↵James Laird2006-11-0852-14116/+20497
| | | | | | | | Linux machines. Updated to the latest versions of autotools. Tested on kagiso, heping, and juniper. Let me know if you have any problems.
* [svn-r12881] updated the batch file a little to reflect the testing position ↵MuQun Yang2006-11-081-10/+6
| | | | of ref.
* [svn-r12880] Purpose: Bug fixLeon Arber2006-11-081-27/+28
| | | | | | | Description: Fix some memory-related bugs in the data transform code Tested: kagiso w/ valgrind 3.2.1
* [svn-r12879] Purpose: Bug fixLeon Arber2006-11-082-13/+22
| | | | | | | Description: Fix a few memory-related bugs in the data transform code. Tested: kagiso (for real this time) w/ valgrind 3.2.1
* [svn-r12878] Description:Quincey Koziol2006-11-079-126/+360
| | | | | | | | Flesh out support for looking up link info by index, some cases for using dense storage are working now. Tested on: Linux/32 2.6 (chicago)
* [svn-r12877] Description:Quincey Koziol2006-11-0713-129/+130
| | | | | | | Clean up more compiler warnings. Tested on: Linux/64 2.6 (chicago2)
* [svn-r12876] Description:Quincey Koziol2006-11-071-4/+17
| | | | | | | | Make code that retrieves names for references thrash memory less by keeping track of the current buffer size and only re-allocating it when necessary. Tested on: Linux/64 2.6 (chicago2)
* [svn-r12875] Description:Quincey Koziol2006-11-076-16/+35
| | | | | | | | | | Fix retrieving name for references to root group. Also, move 'ref' test earlier in testing, right after 'getname' test Tested on: Linux/64 2.6 (chicago2)
* [svn-r12874] MuQun Yang2006-11-072-0/+30
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* [svn-r12873] Decription:Quincey Koziol2006-11-074-29/+73
| | | | | | | | Add support for reverse index lookup to v2 B-trees (needed for reverse index lookup of links in groups) Tested on: Linux/64 2.6 (chicago2)
* [svn-r12872] Description:Quincey Koziol2006-11-0711-148/+704
| | | | | | | | | | | | Implement basic framework for H5Lget_info_by_idx and get it working for creation order indices on compact groups. Clean up code a bit. Close resource link in user-defined link traversal. Tested on: Linux/32 2.6 (chicago)
* [svn-r12871] Description:Quincey Koziol2006-11-072-0/+8
| | | | | | | Clean up a couple of warnings... Tested on: Linux/64 2.6 (chicago2)
* [svn-r12870] Add a new macro H5_HAVE_DIRECT_ALIGN in configure.in. Some ↵Raymond Lu2006-11-066-7/+215
| | | | | | | systems like copper and sleipnir doesn't require alignment for Direct I/O. If this's true, write or read data just like sec2 does.
* [svn-r12869] Description:Quincey Koziol2006-11-0617-742/+1054
| | | | | | | | Rename new H5Gcopy() routine to H5Ocopy() as discussed in last Friday's design discussion. Tested on: Linux/32 2.6 (chicago)
* [svn-r12868] Description:Quincey Koziol2006-11-062-5/+5
| | | | | | | | Make API routines that don't initialize the library more consistent, to help with future internal library changes. Tested on: Linux/64 2.6 (chicago2)
* [svn-r12867] Description:Quincey Koziol2006-11-063-217/+401
| | | | | | | Get rid of H5L API calls from within deprecated H5G API calls. Tested on: Linux/32 2.6 (chicago)
* [svn-r12866] Description:Quincey Koziol2006-11-0610-224/+101
| | | | | | | Clean up initialization of H5F & H5L APIs. Tested on: Linux/64 2.6 (chicago2)
* [svn-r12865] Description:Quincey Koziol2006-11-0610-59/+67
| | | | | | | Change name of H5Lunlink to H5Ldelete, per our design meeting last Friday. Tested on: Linux/32 2.6 (chicago)
* [svn-r12864] Description:Quincey Koziol2006-11-0611-75/+84
| | | | | | | | Changed H5Lget_linkval() to H5Lget_val(), per our design discussion last Friday afternoon. Tested on: Linux/32 2.6 (chicago)
* [svn-r12863] Description:Elena Pourmal2006-11-041-1/+1
| | | | | | | | Daily tests reported failures in HL when Absoft compiler was used. The failure was due to a typo in the H5LTf90proto.h file; fixed Platfroms tested: heping with gcc and Absoft f95
* [svn-r12862] Description:Elena Pourmal2006-11-041-2/+4
| | | | | | | Daily tests reported broken MANIFEST file; fixed. Platfroms tested: heping with bin/chkmanifest
* [svn-r12861] Description:Quincey Koziol2006-11-041-156/+154
| | | | | | | Add actual error checking and set return value if a test fails. Tested on: FreeBSD/32 4.11 (sleipnir)
* [svn-r12860] Description:Quincey Koziol2006-11-043-48/+48
| | | | | | | | Update H5Iget_name() tests to reflect that the name of the object for an ID can be found in many more situations now. Tested on: FreeBSD/32 4.11 (sleipnir)
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