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* [svn-r17266] Description:Quincey Koziol2009-07-3026-378/+380
| | | | | | | | | Clean up various compiler warnings from IRIX64 build Tested on: Mac OS X/32 (amazon) debug & production (yes, I know it's not an IRIX64 system :-) Too minor to require h5committest
* [svn-r17265] Description:Quincey Koziol2009-07-294-30/+23
| | | | | | | | | | | | Bring r17264 from trunk to 1.8 branch: Refine how we store the chunk index address in the layout storage structure. Tested on: FreeBSD/32 6.3 (duty) debug Mac OS X/32 10.5.7 (amazon) debug & production Too minor to require h5committest
* [svn-r17262] Description:Quincey Koziol2009-07-298-127/+157
| | | | | | | | | | | Bring r17261 from trunk to 1.8 branch: Refactoring dataset layout information to segregate the constant items from the variable items (at least from a storage standpoint). Tested on: FreeBSD/32 6.3 (duty) (h5committest performed on trunk)
* [svn-r17260] add test cases for h5diffPeter Cao2009-07-291-0/+2
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* [svn-r17258] Added new file, H5Dlayout.c to project files.Allen Byrne2009-07-284-0/+12
| | | | Tested XP32 VS2005
* [svn-r17255] Fixed Bug 1563 - h5diff and InfinityPeter Cao2009-07-287-8/+45
| | | | Added test cases.
* [svn-r17253] Description:Binh-Minh Ribler2009-07-281-26/+23
| | | | | | | Fixed typos only. Platforms tested: Linux/32 2.6 (jam)
* [svn-r17251] Added H5Dlayout.c to the source and updated the test script ↵Raymond Lu2009-07-282-5/+5
| | | | | | file for h5import. Not tested yet.
* [svn-r17244] Description:Quincey Koziol2009-07-2710-327/+608
| | | | | | | | | | | Bring r17243 from trunk to 1.8 branch: Refactor how the layout message is created/written/read in the dataset's object header. Tested on: FreeBSD/32 6.3 (duty) in debug mode (change h5committested on trunk)
* [svn-r17239] Purpose: Fix bug and improve readabilityBinh-Minh Ribler2009-07-277-177/+432
| | | | | | | | | | | | | | | Description: - Revised DataSet::write to pass in correct string buffer - Added member function DataSet::getInMemDataSize() to simplify getting the dataset's data size in memory. - Added private functions for reading fixed- and variable-len string data: p_read_fixed_len and p_read_variable_len. - Added tests to write/read array of strings to datasets. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r17231] Description:Quincey Koziol2009-07-237-53/+74
| | | | | | | | | Bring r17230 back from trunk to 1.8 branch: Various minor tuneups noticed in working on the revise_chunks branch. Tested on: Mac OS X/32 10.5.7 (amazon) debug & production full testing done on trunk before bringing change back.
* [svn-r17229] Disable a test as C script does.Raymond Lu2009-07-231-2/+2
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* [svn-r17223] Merged the fortran trunk into the branch:Scot Breitenfeld2009-07-223-5/+4
| | | | | | svn merge -r 17164:17222 https://svn.hdfgroup.uiuc.edu/hdf5/trunk/fortran tested: smirom (ifort, pgf90, gfortran, g95), linew
* [svn-r17219] Purpose: Improve readabilityBinh-Minh Ribler2009-07-221-0/+74
| | | | | | | | | | | | | Description: Divided Attribute::read into specific private functions for fixed- and variable-len string data: p_read_fixed_len and p_read_variable_len. Added test to write/read array of strings to attributes. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r17218] Purpose: Improve readabilityBinh-Minh Ribler2009-07-222-107/+136
| | | | | | | | | | | | | Description: Divided Attribute::read into specific private functions for fixed- and variable-len string data: p_read_fixed_len and p_read_variable_len. Added test to write/read array of strings to attributes. Platforms tested: Linux/32 2.6 (jam) FreeBSD/64 6.3 (liberty) SunOS 5.10 (linew)
* [svn-r17217] Bug fix (1468)Albert Cheng2009-07-221-2/+4
| | | | | | | | | | | | | | PathScale was mistaken as the Gcc compiler such that gcc flags were added to it but PathScale did not honor many of them. (e.g. -Wvariadic-macros, -Wold-style-definition, -Winit-self, -Wvariadic-macros, -Wmissing-include-dirs, -Winit-self, -Wc++-compat) Solution: Added a pre-condition to detect pathScale compiler before Gcc is accepted. Tested: Sandia Glory where PathScale compiler is available.
* [svn-r17212] The function h5tools_str_append() incorrectly used the trio of ↵Allen Byrne2009-07-211-35/+33
| | | | | | functions: va_start(), HDvsnprintf(), and va_end(). When the boundary of the string buffer was reached and resized, the HDvsnprintf() function recalled without the other two functions in the code loop. This usage exposed bug 1520 by a user. Tested: linux
* [svn-r17208] Fixed a small bug in the fractal heap code involving filtered ↵Neil Fortner2009-07-212-1/+62
| | | | | | fractal heaps. Tested: jam, linew, smirom (h5committest)
* [svn-r17200] Changed default Gnu fortran compiler from g95 to gfortran sinceAlbert Cheng2009-07-191-2/+2
| | | | gfortran is more likely installed with gcc now.
* [svn-r17197] Changed default Gnu fortran compiler from g95 to gfortran sinceAlbert Cheng2009-07-191-2/+2
| | | | | | | | | gfortran is more likely installed with gcc now. Tested: jam and amani which covers both linux and linux64. No h5committest because this is gnu compiler specific, usually applicable to Linux.
* [svn-r17194] Enable h5copy test.Raymond Lu2009-07-161-6/+6
| | | | Not tested yet.
* [svn-r17186] The ret_value is a (H5A_t *) but FAIL was used. This typo ↵Albert Cheng2009-07-151-1/+1
| | | | | | | | | | | | caused a warning from Linux gcc but resulted in error by AIX xlc compiler. Solution: Changed FAIL to NULL. Tested: Just compiling in the AIX system.
* [svn-r17185] Fixed a typo.Raymond Lu2009-07-141-1/+1
| | | | Not tested yet.
* [svn-r17183] Fixed and updated the script files.Raymond Lu2009-07-142-20/+25
| | | | Not test yet.
* [svn-r17181] Minor fix - The way that H5Tset_size checks whether the ↵Raymond Lu2009-07-141-1/+1
| | | | | | | | datatype is a string wasn't correct. I changed it to use the macro H5T_IS_STRING. Tested on jam - simple change.
* [svn-r17180] In my last round of checkin (r17176), I forgot to clean up some ↵Raymond Lu2009-07-141-5/+0
| | | | | | | | code. I'm checking in the fix now. Tested on jam - simple change.
* [svn-r17179] I added a test of H5Tencode/decode for variable-length string ↵Raymond Lu2009-07-131-13/+131
| | | | | | | | type. This test is for the bug fix of #1585 in last round of checkin. Tested on jam. I used h5committest for the same change in the trunk.
* [svn-r17176] In H5Odtype.c, the decoding function used to mark the datatype ↵Raymond Lu2009-07-1311-13/+62
| | | | | | | | | | as on disk. I changed it to undefined and let the caller functions decide the location of the datatype. For H5Tdecode, it should mark the datatype as in memory. For other callers like H5Dopen or H5Aopen, they should makr it as on disk. Tested it on jam, smirom, linew.
* [svn-r17172] Add simple perl script supplied by user to check for duplicate ↵Larry Knox2009-07-091-1/+21
| | | | | | entries in MANIFEST. Duplicate entries will be reported along with any other MANIFEST errors and cause exit value to be 1. Tested on jam, linew, smirom, and tg-login2.
* [svn-r17165] Description:Scot Breitenfeld2009-07-083-261/+261
| | | | | | Removed extra space after !DEC$ to satisfy absoft compiler. tested: smirom
* [svn-r17158] Snapshot version 1.8 release 3 (snap4)Larry Knox2009-07-067-22/+22
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* [svn-r17153] Description:Quincey Koziol2009-07-032-2/+3
| | | | | | | | | | | Bring r17152 from trunk to 1.8 branch: Clean up some minor formatting and misc. errors noticed while working on fixed array code merge. Tested on: Mac OS X/32 10.5.7 (amazon) Too minor to require h5committest
* [svn-r17150] Description:Quincey Koziol2009-07-0211-92/+196
| | | | | | | | | | | | | | | | | | | | | | | | Bring r17148:17149 from trunk into 1.8 branch: Refactor how chunked dataset information is computed, moving it earlier and avoiding more recomputation. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17147] Description:Quincey Koziol2009-07-0216-218/+330
| | | | | | | | | | | Bring r17146 from trunk to 1.8 branch: Bring a bunch of misc. improvements & tweaks from the revise_chunks branch back to the trunk, so that future merges won't be so painful. Tested on: FreeBSd/32 6.3 (duty) (h5committested on trunk)
* [svn-r17139] Description:Quincey Koziol2009-07-016-11/+75
| | | | | | | | | | | | Bring r17138 from trunk into 1.8 branch: Disable use of temporary file space allocation when using a parallel VFD, until we've made changes to broadcast the new address of the metadata when it is relocated down into 'normal' file space. Tested on: Mac OS X/32 10.5.8 (amazon) (h5committested on trunk)
* [svn-r17134] Snapshot version 1.8 release 3 (snap3)Larry Knox2009-07-017-21/+21
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* [svn-r17131] Corrected some typos. No test is needed.Raymond Lu2009-06-301-2/+2
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* [svn-r17127] A revision from last round of checkin (r17124). H5Aopen_name ↵Raymond Lu2009-06-291-4/+4
| | | | | | | | | has been deprecated. I replaced it with H5Aopen in this round. I also updated some hard-coded numbers with some macros. Tested on jam only. I have tested the same change for the trunk.
* [svn-r17124] Bug fix #1513. Reading an empty attribute caused seg fault. ↵Raymond Lu2009-06-265-23/+63
| | | | | | | | | | | | The flag "initialized" in the attribute structure wan't set correctly. It caused some confusion in H5A_read. This flag was actually redundant because the library can alwasy check if the data buffer is present. To fix it, I removed the "initialized" flag in the attribute structure and let H5A_read check the data buffer. I tested it on jam only but have tested the same change for the trunk on jam, smirom, and linew.
* [svn-r17121] Add bug number for yesterday's fix.Neil Fortner2009-06-261-1/+1
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* [svn-r17114] Newer Solaris compiler uses -m64 inplace of -xarch=v9 which is ↵Albert Cheng2009-06-261-1/+1
| | | | | | | | deprecated. Update the install instruction. No test needed.
* [svn-r17113] Maintenance: Removed duplicated entry from the MANIFEST file.Elena Pourmal2009-06-251-1/+0
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* [svn-r17109] Purpose: Fix bug in H5Z_filter_infoNeil Fortner2009-06-253-1/+14
| | | | | | | | | | | Description: Previously, when H5Z_filter_info was called for a filter that was not present, it would succeed and return the information from one position past the end of the pipeline, possibly causing a segfault. This affected at least H5Pget_fitler_by_id1/2, and possibly other API functions. Fixed to properly return failure. Tested: jam, linew, smirom (h5committest)
* [svn-r17107] Added new windows build examples batch fileAllen Byrne2009-06-251-0/+1
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* [svn-r17102] Added missing Windows batch file.Allen Byrne2009-06-241-0/+221
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* [svn-r17100] Corrected batch file to test C++ examplesAllen Byrne2009-06-241-86/+7
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* [svn-r17086] Description:Scot Breitenfeld2009-06-182-11/+2
| | | | Removed debugging print statements.
* [svn-r17084] Description:Quincey Koziol2009-06-184-114/+350
| | | | | | | | | | | | | | | | | | | | | | | | | Bring r17038-17039,17045,17062 from trunk to 1.8 branch: Switch fractal heap direct & indirect blocks to use temp. space alloc. Improvements to metadata accumulator Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17083] Description:Quincey Koziol2009-06-1811-18/+376
| | | | | | | | | | | | | | | | | | | | | | | Bring r17010,17017,17021-17022,17029-17031,17035 back from trunk: "temporary" file allocation space changes. Tested on: FreeBSD/32 6.3 (duty) in debug mode FreeBSD/64 6.3 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (jam) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/Intel compilers w/default API=1.6.x, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in debug mode Linux/64-amd64 2.6 (abe) w/parallel, w/FORTRAN, in production mode Mac OS X/32 10.5.7 (amazon) in debug mode Mac OS X/32 10.5.7 (amazon) w/C++ & FORTRAN, w/threadsafe, in production mode
* [svn-r17082] Disable hanging invalid files test.Larry Knox2009-06-181-2/+3
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