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* [svn-r9385] *** empty log message ***Quincey Koziol2004-10-099-136/+455
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* [svn-r9384] Purpose:Quincey Koziol2004-10-092-3/+20
| | | | | | | | | | | | | | | | | | | | | | | Refactor and update fortran configuration Description: Changed configure.in to include the production, debugging and profiling flags for FORTRAN in the command line. Added '-flags' files for PGI and Intel C compilers Added '-fflags' files for PGI and Intel FORTRAN compilers Updated 'gnu-flags' file for GNU C compiler to not modify compiler flags when gcc is not being used. Make detection of the correct FORTRAN compiler a bit smarter for Linux platforms. (And carried over some of the minor changes to other affected machines) Platforms tested: Linux 2.4 (tungsten) w/PGI and Intel C & FORTRAN compilers. Changes not tested by h5committest
* [svn-r9382] *** empty log message ***Quincey Koziol2004-10-081-10/+11
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* [svn-r9379] Purpose:Xuan Bai2004-10-061-0/+0
| | | | | | | | | | | | | | | | | Update and bug fix. Description: Update Windows projects setting as new source code was added. Fix a bug in hdf5build.bat file. Solution: 1. Add hdf5/tools/lib/h5tools_type.c into toolslib and toolslibD projects. 2. There was a minor bug with hdf5build.bat file when it is used to build C library only. Remove redundant scripts in the batch file. Platforms tested: Visual C++ 6.0 on Windows XP and 2000. Misc. update:
* [svn-r9375] Purpose:Quincey Koziol2004-10-063-12/+38
| | | | | | | | | | | | | Bug fix Description: Close a couple of memory leaks Platforms tested: FreeBSD 4.10 (sleipnir) Solaris 2.7 (arabica) w/purify Linux 2.4 (verbena) too minor for h5committest
* [svn-r9373] Purpose:Quincey Koziol2004-10-061-0/+1
| | | | Update manifest with new file.
* [svn-r9370] Purpose:Quincey Koziol2004-10-0619-313/+228
| | | | | | | | | | | | | | | Refactor code Description: Refactor common code for determining the native type for using in the tools into separate routine. Also, reduce diffs between the two branches and bring back some fixes from the development branch to the release branch. Platforms tested: FreeBSD 4.10 (sleipnir) too minor to require h5committest
* [svn-r9369] Purpose:Leon Arber2004-10-051-114/+402
| | | | | | | | | | | | Added tests for most of the types that were added to the data transform code. Further tests will also be added shortly. Platforms tested: sol + eirene Misc. update:
* [svn-r9368] Purpose:Leon Arber2004-10-051-508/+972
| | | | | | | | | | | | | | | | Rewrote H5Z_xform_eval_full such that it no longer "returns an aggregate" Added support for CHAR, LONG, ULONG, DOUBLE, SHORT, USHORT, UCHAR, SCHAR, and UINT to the data transform. Support for LLONG and ULLONG to be added shortly. Description: Data transforms can now operate on arrays with the native types listed above. Platforms tested: sol + eirene Misc. update:
* [svn-r9366] Raymond Lu2004-10-053-8/+19
| | | | | | | | | Purpose: feature change Description: Prevent creating datatype of size 0. Platforms tested: fuss(simple change)
* [svn-r9364] Raymond Lu2004-10-0511-44/+173
| | | | | | | | | | | | Purpose: change feature Description: Back up support bitfield and time datatypes in H5Tget_native_type.Leave it to future support. Let it return "not supported" error message for now. Platforms tested: h5committest and fuss. Misc. update: RELEASE.txt
* [svn-r9362] Purpose:Xuan Bai2004-10-051-0/+0
| | | | | | | | | | | | | | | | Update hdf5build.bat file. Description: Previouly, when building HDF5 from command line, hdf5 and hdf5dll projects were built three times to build HDF5 C/C++/Fortran libraries. There was due that the "Rebuild" option was used with msdev.exe. It is kind of wasting to build hdf5 and hdf5dll projects three time. Solution: The batch file is reorganized. So hdf5 and hdf5dll projects will be only be built once. Also, the syntax detecting feature is added to the batch file. Now if an unexpected option was given to the batch file, a warning message and the help messages would be shown. Platforms tested: Visual C++ 6.0 on Windows 2000 and XP. Misc. update:
* [svn-r9360] Purpose:Xuan Bai2004-10-051-0/+0
| | | | | | | | | | | | | | | | Update. Description: H5DSeq.c was removed from hdf5/src, and H5Defl.c, H5Dselect were added to hdf5/src. So the related windows projects need to be updated. Solution: 1. Removed H4DSeq.c from hdf5 and hdf5dll projects. 2. Added H5Defl.c and H5Dselect.c to hdf5 and hdf5dll projects. Platforms tested: Visual C++ 6.0 on Windows 2000 and XP. Misc. update:
* [svn-r9358] Purpose:Quincey Koziol2004-10-0413-73/+228
| | | | | | | | | | | | | | | Bug fix Description: Relax restrictions on parallel I/O to allow compressed, chunked datasets to be read in parallel (collective access will be degraded to independent access, but will retrieve the information still). Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) IRIX64 6.5 (modi4) h5committest
* [svn-r9357] Snapshot version 1.7 release 39HDF Admin2004-10-036-15/+21
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* [svn-r9354] Purpose:Quincey Koziol2004-10-0119-1769/+1842
| | | | | | | | | | | | | | | | Bug fix & code cleanup Description: More dataset cleanups to get to a point where we can fix the chunked I/O bug. Also fix a couple of errors in the recent file object resurrection changes which should hopefully address the recent daily test failres (H5T.c) Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) h5committest
* [svn-r9352] Purpose:Xuan Bai2004-10-011-0/+0
| | | | | | | | | | | | | | | | Bug Fix. Description: Fix bugs in installhdf5lib.bat batch file as described below: previously, h5diff.exe, h5diffdll.exe, h5repack.exe, and h5repackdll.exe were not installed into hdf5lib directory. Solution: Add scripts to copy the above 4 files into corresponding directories under hdf5lib. Platforms tested: Windows XP. Misc. update:
* [svn-r9350] *** empty log message ***Raymond Lu2004-10-014-9/+103
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* [svn-r9349] Purpose: New feature enhancementRaymond Lu2004-10-011-0/+4
| | | | | | | | | | | | Description: enable size adjustment for compound datatype. The size can be increased and decreased(as long as the last member isn't cut). Solution: mainly check if the last member is being cut when decreasing the size. Others are simply taking out assertion to enable this feature. Platforms tested: h5committest and fuss. Misc. update: RELEASE.txt
* [svn-r9348] Frank Baker2004-09-301-146/+216
| | | | | | | | Purpose: This version updates the procedure for creating PDF versions of HDF5 documents to reflect the use of Macromedia DreamWeaver and HTMLdoc. process.txt describes the current RM process in detail; the very similar UG process will be described later.
* [svn-r9347] Purpose:Frank Baker2004-09-301-0/+1
| | | | Adding hdf5/doc/html/PSandPDF/process.txt.
* [svn-r9346] Frank Baker2004-09-301-0/+148
| | | | | | | | | | Purpose: This file describes the process for creating the PDF versions of HDF5 documents. The file being checked in now is the original version (November 1999) from when hte process used MS Word. Platforms tested: This process was tested by using it to guide the production process for at least 2 releases.
* [svn-r9344] Purpose:Quincey Koziol2004-09-301-1/+0
| | | | Update manifest list.
* [svn-r9342] Purpose:Quincey Koziol2004-09-3018-1365/+661
| | | | | | | | | | | | | | | | Bug fix/code cleanup Description: Clean up raw data I/O code to bundle the I/O parameters (dataset, DXPL ID, etc) into a single struct to pass around through the dataset I/O routines, since they are always passed together, until very near the bottom of the I/O stack. Platforms tested: FreeBSD 4.10 (sleipnir) w/parallel Solaris 2.7 (arabica) IRIX64 6.5 (modi4) h5committest
* [svn-r9340] Purpose:Albert Cheng2004-09-291-3/+3
| | | | | | | | | | | | | | | | | | | | | Bug fix. Description: There was a historical hack to prevent runtest in multiple hosts to run cvs update while they were launched by the daily test. But a more proper fix has been implemented to prevent that but this hack was not removed. It ended up enforcing one CVS update per day. But if someone tested runtest during the day, it would prevent the evening daily from doing update. That is not good. Solution: Removed the hack which is not need any more. Platforms tested: NO h5committest since it does test runtest. Tested it by hand in eirene and heping. Misc. update:
* [svn-r9333] Purpose:Quincey Koziol2004-09-282-2/+2
| | | | | | | | | | | Bug fix Description: Fix another couple of int <-> pointer checks. Platforms tested: AIX 5.1 (copper) Too minor to require h5committest
* [svn-r9332] Purpose:Quincey Koziol2004-09-281-1/+1
| | | | | | | | | | | Bug fix Description: Correct assertion to check pointer value correctly. Platforms tested: AIX 5.1 (copper) too minor to require h5committest
* [svn-r9330] Purpose:Quincey Koziol2004-09-281-4/+3
| | | | | | | | | | | Bug fix Description: Another attempt to fix the address overflow in the core VFL, hopefully one that works on 64-bit platforms. Platforms tested: AIX 5.1 (copper)
* [svn-r9329] James Laird2004-09-2848-2266/+2784
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Purpose: Feature Description: Datatypes and groups now use H5FO "file object" code that was previously only used by datasets. These objects will hold a file open if the file is closed but they have not yet been closed. If these objects are unlinked then relinked, they will not be destroyed. If they are opened twice (even by two different names), both IDs will "see" changes made to the object using the other ID. When an object is opened using two different names (e.g., if a dataset was opened under one name, then mounted and opened under its new name), calling H5Iget_name() on a given hid_t will return the name used to open that hid_t, not the current name of the object (this is a feature, and a change from the previous behavior of datasets). Solution: Used H5FO code that was already in place for datasets. Broke H5D_t's, H5T_t's, and H5G_t's into a "shared" struct and a private struct. The shared structs (H5D_shared_t, etc.) hold the object's information and are used by all IDs that point to a given object in the file. The private structs are pointed to by the hid_t and contain the object's group entry information (including its name) and a pointer to the shared struct for that object. This changed the naming of structs throughout the library (e.g., datatype->size is now datatype->shared->size). I added an updated H5Tinit.c to windows.zip. Platforms tested: Visual Studio 7, sleipnir, arabica, verbena Misc. update:
* [svn-r9327] Purpose:Quincey Koziol2004-09-283-12/+3
| | | | | | | | | | | | | Bug fix. Description: Fix off-by-one error in Core VFL driver which would cause spurious address or size overflow errors when an odd valued address or size was checked. Platforms tested: FreeBSD 4.10 (sleipnir) Linux 2.4 (heping) Solaris 2.7 (arabica)
* [svn-r9324] Purpose:Xuan Bai2004-09-271-0/+0
| | | | | | | | | | | | | | | Update. Description: Update installhdf5lib.bat batch file. Cleaned two redundant scripts in the batch file. Solution: Clean script. Platforms tested: Windows XP. Misc. update:
* [svn-r9322] Purpose:Quincey Koziol2004-09-273-67/+203
| | | | | | | | | | | | | Bug fix Description: Fix situation where deleting a chunked datasets with B-tree nodes that weren't in the metadata cache would die with a core dump. Platforms tested: FreeBSD 4.10 (sleipnir) Linux 2.4 (heping) Solaris 2.7 (arabica)
* [svn-r9321] Snapshot version 1.7 release 38HDF Admin2004-09-266-18/+80
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* [svn-r9319] Purpose:Albert Cheng2004-09-251-1/+7
| | | | | | | | | | | | | Feature Description: Added code to support the -configname feature. Platforms tested: no h5committest which does not test this command. ran it by hand in eirene comparing tg-login1 and tg-login2. Misc. update:
* [svn-r9317] Purpose:Albert Cheng2004-09-241-49/+45
| | | | | | | | | | | | | | | | | | | | | | | | Code clean up Description: The tests used to have their own test file names due to the original program layout. Now that it is using the common test interface, individual test can be invoked at will (via -o). There is no need to have different test filenames. Only requirement is that certain read tests must follow immediately the corresponding write test since they use the same file. I have combined all test file names into just one common file name. This reduces the printout of test file name, very beneficial when the test is run by large number of processes. It makes future code maintenance easier too. Platforms tested: Tested in Eirene(PP) only. No h5committest because this is limited to the parallel tests and the changes are trivial. Misc. update:
* [svn-r9316] Purpose:MuQun Yang2004-09-231-0/+0
| | | | | | | | | | | | | | | Fix a small bug inside installhdf5lib.bat. Description: Fortran .h files are not needed. Previously c++ header files are not properly moved. Solution: Platforms tested: No need to test. Misc. update:
* [svn-r9314] Purpose:Leon Arber2004-09-231-0/+6
| | | | | | | | | | | | | | | | Bug fix Description: Fix for small memory leak that occurs when destroying the data transform property. Forgot to free the array of pointers to the temorary data. Solution: Freed memory. Platforms tested: sol + eirene Misc. update:
* [svn-r9312] Purpose:Quincey Koziol2004-09-232-6/+13
| | | | | | | | | | Bug fix. Description: Allow I/O to occur on 0 element selections. Platforms tested: h5committest
* [svn-r9310] Purpose:Quincey Koziol2004-09-221-0/+27
| | | | | | | | | | | | | | Code optimization Description: Avoid performing a check on the number of objects in a group (which currently involves iterating over all entries in the group's B-tree) before calling H5G_get_obj<foo>_by_idx. Instead, just have H5G_get_obj<foo>_by_idx() notice when you've walked off the end and return fail then. Platforms tested: FreeBSD 4.10 (sleipnir) h5committest
* [svn-r9309] Purpose:Albert Cheng2004-09-222-21/+12
| | | | | | | | | | | | | | | Cleanup Description: Remove old hack for H5Eget_auto() which is not needed any more. Reverse H5E_set_auto_stack(H5EDEFAULT,...) back to previous code of H5E_set_auto(...). Same for H5E_get_auto_stack. Platforms tested: Only tested in Eirene PP as the change is pretty straight forward. Misc. update:
* [svn-r9298] Purpose:Albert Cheng2004-09-221-12/+0
| | | | | | | | | | | | Bug fix. Description: the Data transformation code that failed when a data transform property for simple expression is fixed. Turned the tests back on. Platforms tested: Tested in copper (pp) where the failure appeared. Also in eirene as double check. No h5committest as the change is trivial.
* [svn-r9297] Purpose:Albert Cheng2004-09-221-5/+10
| | | | | | | | | | | | | | | | Bug fix. Description: Code would attempt to Calloc with zero count when a simple expression that has no x term. That resulted in NULL for some platform (like AIX). That appeared as a failure treated as out of space. Solution: Checked if count is larger than 0 before making the calloc request. Platforms tested: Tested in copper (pp) where the failure appeared. Also in eirene as double check. No h5committest as the change is trivial.
* [svn-r9274] Purpose:John Mainzer2004-09-183-2/+302
| | | | | | | | | | | | | | | | | | | | | | | | | Add test to verify the fix of the parallel I/O mode confusion bug. Description: While the parallel I/O mode confusion bug is fixed, an automated regression test for this bug would be useful. Solution: Added a modified version of the original bug demonstration program to testphdf5. Platforms tested: copper h5committested eirene (parallel) Misc. update:
* [svn-r9273] Purpose:John Mainzer2004-09-181-0/+120
| | | | | | | | | | | | | | | | | | | | | | | | | | | Port fix of parallel I/O mode confusion bug from the 1.6 tree to the 1.7 tree. Description: Collective I/O is not supported for point selections. Thus when some processes attempted I/O with point selections, and others without, some attempted collective I/O while others did independent I/O. Solution: Arranged for all processes to compare notes before starting I/O, and for all to use independent I/O if any one of them can't do collective I/O. Platforms tested: copper h5committested eirene (parallel) Misc. update:
* [svn-r9272] Purpose:Albert Cheng2004-09-171-2/+13
| | | | | | | | | | | | | Bug fix. Description: THe trivial transform property list creation triggered a code error. Skip these two tests temporary. Will fix it later. Platforms tested: Copper where it exposed the failures. Misc. update:
* [svn-r9271] Purpose:Albert Cheng2004-09-171-0/+1
| | | | | | | Update for the new API, H5Pget_data_transform. Platforms tested: Copper only. No h5committest since this is trivial.
* [svn-r9268] Purpose:Leon Arber2004-09-161-5/+68
| | | | | | | | | Added tests for polynomial transforms. Platforms tested: sol + eirene Misc. update:
* [svn-r9267] Purpose:Leon Arber2004-09-164-111/+361
| | | | | | | | | | | | | | | | | | | Added H5Pget_data_transform Added support for polynomial data transforms Description: There is now support for polynomial data transforms (ie, (2+x)*(x-5)) instead of just linear ones. Note that, in order to compute a polynomial transform, one temporary copy of the original data must be stored for each occurence of "x" in the transform expression. This can result in very high memory usage for expressions of high order. Platforms tested: sol + eirene Misc. update:
* [svn-r9264] Purpose:Quincey Koziol2004-09-151-0/+3
| | | | | | | Cleanup Description: Move bug description into reverse chronological order.
* [svn-r9261] Purpose:Quincey Koziol2004-09-151-1/+1
| | | | | | | | | | | Code cleanup Description: Remove some test files generated from new tests. Platforms tested: FreeBSD 4.10 (sleipnir) Too minor to require h5committest
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