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* Fixed HDFFV-10404Binh-Minh Ribler2018-07-26100-314/+313
| | | | | | | | | Description: Applied the typo fixes from user's report. The previous pull request couldn't be merged because it was too old, and it was too complicated for me to resolve conflicts. Platform tested: Linux/64 (jelly) - very minor
* Add note about single chunk caching and serial libraryJordan Henderson2018-07-261-1/+7
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* Add check for actually using the MPI file driver when caching one chunkJordan Henderson2018-07-261-1/+15
| | | Better explain rationale behind chunk caching issue fix
* Fix error message mentioning wrong MPI function usedJordan Henderson2018-07-261-1/+1
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* HDFFV-10527:corrected two more typos.Hyo-Kyung Lee2018-07-261-2/+2
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* HDFFV-10527:corrected typos in comment blocks.Hyo-Kyung Lee2018-07-261-2/+2
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* Changes based on feedback from pull request.Vailin Choi2018-07-263-6/+3
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* Vailin's fix for H5open fail when file doesn't have write permissionsLarry Knox2018-07-260-0/+0
| | | | | for user in test_misc33(). The test file can be opened read-only because the test doesn't write to it.
* Fix test_misc33() in test/tmisc.cVailin Choi2018-07-261-1/+1
| | | | Open the test file read-only so that it can be accessed for testing.
* Modifications made based on feedback from pull request.Vailin Choi2018-07-266-12/+50
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* Fix for HDFFV-10333:Vailin Choi2018-07-2620-147/+461
| | | | | | | | | 1) Check for valid object header version for a refcount messge 2) Check for invalid fill value size 3) Check for invalid dimension size in a layout message 4) Add --enable-error-stack option to h5stat 5) Add error checks to h5stat.c 6) Add tests to h5stat and h5dump
* fixed typo.Hyo-Kyung Lee2018-07-261-1/+1
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* Fix for HDFFV-10509Jordan Henderson2018-07-261-2/+15
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* Fix H5detect to use no_sanitize_address attribute and support GCC sanitizersJerome Soumagne2018-07-261-7/+5
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* Merge pull request #1124 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2018-06-2926-54/+576
|\ | | | | | | | | | | | | hdf5_1_10 * commit 'c0dfec8913497d62cf1ab7e13e62e3fe55d6e859': HDFFV-10519 Disable WriteVL JNI function, updgrade JNI
| * HDFFV-10519 Disable WriteVL JNI function, updgrade JNIAllen Byrne2018-06-2926-54/+576
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* Merge pull request #1121 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2018-06-2611-496/+608
|\ | | | | | | | | | | | | hdf5_1_10 * commit '7636342d959bfd3d023345bac76650932961d843': Push updates from develop
| * Push updates from developAllen Byrne2018-06-2611-496/+608
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* Merge pull request #1118 in HDFFV/hdf5 from ~HDFTEST/hdf5_hft:hdf5_1_10 to ↵hdftest2018-06-246-7/+7
|\ | | | | | | | | | | | | hdf5_1_10 * commit '25f80cbbec3a7d8036325784168b029cb71cc813': Snapshot version 1.10 release 3 (snap3)
| * Snapshot version 1.10 release 3 (snap3)hdftest2018-06-246-7/+7
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* Merge pull request #1110 in HDFFV/hdf5 from ~BYRN/hdf5_adb:hdf5_1_10 to ↵Allen Byrne2018-06-191-332/+14
|\ | | | | | | | | | | | | | | | | hdf5_1_10 * commit 'd5e78d2ecfd19e8e912cce654462ccc6e853fb72': Update document HDFFV-10433 Updated text to address issues raised. Merge corrections from develop
| * Update documentAllen Byrne2018-06-191-327/+0
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| * HDFFV-10433 Updated text to address issues raised.Allen Byrne2018-06-111-5/+14
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| * Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Allen Byrne2018-05-296-7/+7
| |\ | | | | | | | | | | | | * commit '413bc90ec95524c72d0576bc9f1fc5356e541473': Updated version to 1.10.3-snap2
| * \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)Allen Byrne2018-05-253-12/+12
| |\ \ | | | | | | | | | | | | | | | | | | | | | | | | * commit 'c1a308d7c9f361cc5720e345685ec43a2dd24297': Correct script names Fix typo Minor H5FS tweaks.
| * | | Merge corrections from developAllen Byrne2018-05-252-3/+3
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* | | | Merge pull request #1113 in HDFFV/hdf5 from ~HDFTEST/hdf5_hft:hdf5_1_10 to ↵hdftest2018-06-166-7/+7
|\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | hdf5_1_10 Update version to snap3 * commit '67d6f8d405b16c99590f112f429a352157be3554': Snapshot version 1.10 release 3 (snap2)
| * \ \ \ Merging in latest from upstream (HDFFV/hdf5:refs/heads/hdf5_1_10)hdftest2018-06-16128-2769/+3433
| |\ \ \ \ | |/ / / / |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '87829e06189cd9b29583b5ca8065b52b1f4cd523': (30 commits) HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly Cleaned up H5Fmount/unmount code. Normalization with vol_integration branch. Add fortran MPI to test and example Add mpi include folders for fortran C objects Normalization with the vol_integration branch. Fixed MANIFEST Fix usage of compression lib in shared tests Fix jni function call version Fix the error found after earlier checkin. H5O_info fixes for java and examples Added a RELASE.txt entry for HDFFV-10505. Changed 'deprecated' to indicate 'no longer supported' in the --enable-debug/production configure flags. (1) Made the change according to the pull request feedback. (2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463. Normalize with vol_integration. Removed unused H5MF functions and updated FUNC_ENTER macros and naming in H5MFsection.c. Restored some unused #defines to the deprecated section of H5Dpublic.h. Changes made based on feedback from pull request #1039. ...
* | | | | Merge pull request #1111 in HDFFV/hdf5 from hdf5_1_10.sync to hdf5_1_10Scot Breitenfeld2018-06-15128-2769/+3433
|\ \ \ \ \ | |_|_|_|/ |/| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit '57f64b92d19fed2879ee9bafe1d29bfac865d54c': (30 commits) HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly Cleaned up H5Fmount/unmount code. Normalization with vol_integration branch. Add fortran MPI to test and example Add mpi include folders for fortran C objects Normalization with the vol_integration branch. Fixed MANIFEST Fix usage of compression lib in shared tests Fix jni function call version Fix the error found after earlier checkin. H5O_info fixes for java and examples Added a RELASE.txt entry for HDFFV-10505. Changed 'deprecated' to indicate 'no longer supported' in the --enable-debug/production configure flags. (1) Made the change according to the pull request feedback. (2) Removed the performance test form test/th5o.c: will decide on what needs to be done to show speedup via HDFFV-10463. Normalize with vol_integration. Removed unused H5MF functions and updated FUNC_ENTER macros and naming in H5MFsection.c. Restored some unused #defines to the deprecated section of H5Dpublic.h. Changes made based on feedback from pull request #1039. ...
| * | | | Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-06-1410-516/+531
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| | * \ \ \ Merge pull request #1101 in HDFFV/hdf5 from ↵Dana Robinson2018-06-1310-516/+531
| | |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ~DEROBINS/hdf5_der:vi_develop_normalize to develop * commit '18fbdebb977d7a4dbaa99ec6b153a49e3b4883d5': Cleaned up H5Fmount/unmount code. Normalization with vol_integration branch. Normalization with the vol_integration branch.
| | | * | | | Cleaned up H5Fmount/unmount code.Dana Robinson2018-06-071-18/+40
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| | | * | | | Normalization with vol_integration branch.Dana Robinson2018-06-077-270/+256
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| | | * | | | Normalization with the vol_integration branch.Dana Robinson2018-06-063-235/+242
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| * | | | | | Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-06-124-3/+91
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| | * | | | | Merge pull request #1108 in HDFFV/hdf5 from ~BRTNFLD/hdf5_msb:develop to developScot Breitenfeld2018-06-114-3/+91
| | |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'fe325fb554eddceccfa1674d804d5c7aed846bde': HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does not work properly
| | | * | | | | HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does ↵M. Scot Breitenfeld2018-06-082-6/+6
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | not work properly misc. clean-up
| | | * | | | | HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F ↵M. Scot Breitenfeld2018-06-081-1/+1
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | does not work properly added dependency on H5ff.F90 for H5_ff.F90
| | | * | | | | HDFFV-10405: Using h5fget_obj_count_f with a file id of H5F_OBJ_ALL_F does ↵M. Scot Breitenfeld2018-06-083-2/+90
| | |/ / / / / | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | not work properly h5fget_obj_count_f with H5F_OBJ_ALL_F counted objects created in h5open_f, which should not be included in the count. The function now returns the correct number of objects (i.e., objects created in h5open are not included in the total).
| * | | | | | Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-06-084-9/+11
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| | * | | | | Merge pull request #1103 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developScot Breitenfeld2018-06-062-4/+6
| | |\ \ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | * commit 'df64de9eedea0cb7796f37f9c141d81c636742c7': Add fortran MPI to test and example
| | | * | | | | Add fortran MPI to test and exampleAllen Byrne2018-06-062-4/+6
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| | * | | | | Merge pull request #1102 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developScot Breitenfeld2018-06-062-5/+5
| | |\ \ \ \ \ | | | |/ / / / | | |/| | | | | | | | | | | | | | | | | | * commit '81300213e7837fd980b74d95482e0a71777773fd': Add mpi include folders for fortran C objects
| | | * | | | Add mpi include folders for fortran C objectsAllen Byrne2018-06-062-5/+5
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| * | | | | Merge branch 'develop' into hdf5_1_10.syncM. Scot Breitenfeld2018-06-04112-2245/+2804
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| | * | | | Merge pull request #1097 in HDFFV/hdf5 from ~DEROBINS/hdf5_der:develop to ↵Dana Robinson2018-06-011-2/+3
| | |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | develop * commit 'd1719d4906009c76eb286fbfe933328395404443': Fixed MANIFEST
| | | * \ \ \ Merge branch 'develop' of ↵Dana Robinson2018-06-012-4/+4
| | | |\ \ \ \ | | | | | | | | | | | | | | | | | | | | | | | | https://bitbucket.hdfgroup.org/scm/~derobins/hdf5_der into develop
| | | * | | | | Fixed MANIFESTDana Robinson2018-06-011-2/+3
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| | * | | | | | Merge pull request #1096 in HDFFV/hdf5 from ~BYRN/hdf5_adb:develop to developAllen Byrne2018-06-011-1/+18
| | |\ \ \ \ \ \ | | | |_|/ / / / | | |/| | | | | | | | | | | | | | | | | | | | | * commit 'f5b0b1c60784a3dbfea6cdf6082106fc8bed0462': Fix usage of compression lib in shared tests
| | | * | | | | Fix usage of compression lib in shared testsAllen Byrne2018-06-011-1/+18
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