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* [svn-r14307] Description:Quincey Koziol2007-11-299-256/+542
| | | | | | | | | | | | | | | | | | | | | | | | - Extracted common code from H5D_select_read/H5D_select_write into single routine (H5D_select_io) and made H5D_select_read/H5D_select_write "gateway" routines, passing I/O buffer to operate on in "op" struct. - Create optimized pathway in H5D_select_io for I/O operations on single elements. - Make "get linear offset of first element" callback for each type of selection (used in "optimized pathway", above) Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14306] Description:Quincey Koziol2007-11-295-129/+125
| | | | | | | | Add call to reset cached chunk info after initialization of chunk data storage. Tested on: Linux/64 2.4(smirom) w/parallel
* [svn-r14305] updated commentsPedro Vicente Nunes2007-11-291-0/+2
| | | | tested: windows, linux
* [svn-r14304] change feature: rename compression used as %Savings Pedro Vicente Nunes2007-11-291-5/+3
| | | | | | | | | | | now the minus sign shows there was a DECREASE in compression percentage is calculated from per = (b-a)/a; where a= size of dataset before b = size after tested: windows, linux
* [svn-r14303] Purpose: Update h5ls test script on Windows.Scott Wegner2007-11-291-2/+7
| | | | | | | | Description: The h5ls test script was recently updated on Linux. This makes the same changes on Windows. Also, we had to comment out one of our tests, because h5ls returns an error-code that is giving false-positives. Tested: VS2005 on WinXP
* [svn-r14302] Purpose: Update Windows test scripts for recent changesScott Wegner2007-11-292-5/+5
| | | | | | | | | | Description: Minor changes were recently made in the linux test scripts for h5diff and h5repack. This brings Windows up-to-date. Note: I am still working on updates to testh5ls.bat-- there is one test that is failing, but should be ready soon. Tested: VS2005 on WinXP
* [svn-r14301] Purpose: Remove references to deleted source file from Windows ↵Scott Wegner2007-11-296-154/+0
| | | | | | | | | | project files. Description: h5repack_list.c was deleted from the repository recently. This check-in also removes references in the Windows library. Tested: Built with VS2005
* [svn-r14300] new feature: add a mention of multiple filters use in usagePedro Vicente Nunes2007-11-281-0/+4
| | | | tested: windows, linux
* [svn-r14299] new feature: add support for h5repack to handle several global ↵Pedro Vicente Nunes2007-11-2815-1963/+1759
| | | | | | | | filters usage is to repeat the -f option tested: windows, linux, solaris
* [svn-r14298] Purpose: Remove references of H5FD_stream.c from Windows ↵Scott Wegner2007-11-284-130/+0
| | | | | | | | | project files. Description: The stream file driver was recently removed from the HDF5-1.8 source. This checkin removes any left-over references in the Windows projects. Tested: VS2005
* [svn-r14297] Added the ability to locate szlib libraries in THG hosts.Albert Cheng2007-11-281-35/+102
| | | | | Tested: kagiso, linew. All worked. Smirom (configure works, make failed due to szlib itself),
* [svn-r14295] Description:Quincey Koziol2007-11-273-135/+284
| | | | | | | | | | | | | | | | | | | | | | - Eliminate some redundant calls to retrieve datatype sizes in chunk read/ write routines. - Change indexed storage "common" B-tree callback user data to avoid copying chunk offset and separate "downward" info from "upward" info. - Cache chunk info (nbytes/filter_mask/address) for last chunk accessed Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14294] bug fix: in the filter percentage calculation Pedro Vicente Nunes2007-11-271-7/+14
| | | | tested: windows, linux, solaris
* [svn-r14293] bug fix: the printing of object name was not done when H5Ocopy ↵Pedro Vicente Nunes2007-11-271-3/+6
| | | | | | was used tested: windows, linux
* [svn-r14292] enhancement: clarify usage of the -s optionPedro Vicente Nunes2007-11-261-2/+2
| | | | tested: windows, linux
* [svn-r14291] enhancement: clarify the usage of the -m optionPedro Vicente Nunes2007-11-261-2/+2
| | | | tested: windows, linux, solaris
* [svn-r14290] Maintenance after beta5 release: changed version number to ↵Elena Pourmal2007-11-265-23/+23
| | | | | | | | 1.8.0-rc1 (stands for 1.8.0 release candidate # 1) Platforms tested: none, minor change with the known script.
* [svn-r14288] Maintenance for beta5 release: vesrion number was changed to ↵hdf5-1_8_0-beta5Elena Pourmal2007-11-267-17/+19
| | | | | | | | 1.8.0-beta5 by running bin/h5vers script Platforms tested: kagiso (minor change)
* [svn-r14287] Maintenance before creating beta5 tar ball.Elena Pourmal2007-11-262-17/+11
| | | | Platforms tested: None (minor edits in the documentation files)
* [svn-r14286] Description:Quincey Koziol2007-11-256-9/+667
| | | | | | | | | | | | | | | | | | | Add H5Ovisit() and H5Ovisit_by_name() API routines. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14285] Description:Quincey Koziol2007-11-245-44/+506
| | | | | | | | | | | | | | | | | | | | | | | Add H5Lvisit() API routine. Add explicit regression tests for H5Lvisit_by_name(). Correct error with visiting links when links contain loop to group already encountered. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14284] Description:Quincey Koziol2007-11-2464-1542/+1541
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Add H5Lvisit_by_name() API routine to library. Eliminated all (five!) other group traversal routines and changed them all to use the new API routine. Cleaned up output of h5ls & h5stat: - Issue error when requesting recursive traversal of a file with the "group info" flag, but no group given - Print info about root group in all(?) appropriate situations - Don't print "verbose" information about root group until the root group is in the list of objects to display (mostly because h5ls & h5stat had a different twist on traversing the groups in a file that the other utilities) Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14283] Description:Quincey Koziol2007-11-241-2/+1
| | | | | | | | Open external link file with read-only access, to avoid permissions issue in certain circumstances. Tested on: FreeBSD/32 6.2 (duty) w/read-only testfile
* [svn-r14279] bug fix: when it's not possible to compare attributes due to ↵Pedro Vicente Nunes2007-11-211-0/+2
| | | | | | different lenght in its type, make the options be flaged with the "not comparable" flag tested: windows, linux
* [svn-r14278] Description:Quincey Koziol2007-11-2010-117/+395
| | | | | | | | | | | | | | | | | | | | - Remember # of elements in file selection, instead of querying more than once - Handle building chunk map for single element as special case Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14277] Maintenance: updated VMS command file with new source filesElena Pourmal2007-11-201-8/+8
| | | | Platforms tested: VMS server
* [svn-r14276] bug fix: avoid an assertion when string type sizes are differentPedro Vicente Nunes2007-11-201-1/+12
| | | | | | | | instead print a warning message on verbose mode saying that the comparison is not possible note: partial fix, the next step is to compare strings that have different type sizes tested: windows
* [svn-r14275] Removed all stream-vfd source code, both library and test.Albert Cheng2007-11-204-1762/+0
| | | | | | | Updated MANIFEST of the removal too. Tested: Kagiso and smirom.
* [svn-r14274] new feature: add some new syntax tests for h5repackPedro Vicente Nunes2007-11-201-2/+2
| | | | tested: linux
* [svn-r14273] new feature: added some long options to the testsPedro Vicente Nunes2007-11-204-6/+6
| | | | tested: linux
* [svn-r14272] Description:Quincey Koziol2007-11-201-1/+1
| | | | | | | | | | | | | | | | | | Fix missing parameter from last checkin... Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14271] Description:Quincey Koziol2007-11-209-29/+30
| | | | | | | | | | | | | | | | | | | Avoid copying maximum dimensions for temporary dataspaces used for describing chunks during raw data I/O. Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
* [svn-r14270] Description:Albert Cheng2007-11-2015-648/+71
| | | | | | | | | | Removed the stream-vfd from the basic library code. (The stream-vfd source files are not removed yet but the MANIFEST has been updated to NOT release those stream-vfd source files.) Platforms tested: Kagiso and smirom. Then test the release tar ball in kagiso.
* [svn-r14269] bug fix: in the usage message example syntaxPedro Vicente Nunes2007-11-191-1/+1
| | | | tested: linux
* [svn-r14268] enhancement: commnents and correct syntax for h5repack optionsPedro Vicente Nunes2007-11-192-4/+9
| | | | tested: linux
* [svn-r14267] enhancement: formatted h5diff usage Pedro Vicente Nunes2007-11-1919-293/+456
| | | | tested: linux
* [svn-r14266] enhancement: format usage messagePedro Vicente Nunes2007-11-192-2/+4
| | | | tested: linux
* [svn-r14265] Purpose: Bring Windows test scripts up to date for h5diff changes.Scott Wegner2007-11-195-88/+102
| | | | | | | | Description: Recently, the format of parameters for h5diff was changed. This checkin makes the neccessary changes for Windows to also bring it up to date. Tested: VS6 on WinXP
* [svn-r14264] new features: 1) new usage for h5diff " A la" h5dump formatPedro Vicente Nunes2007-11-1621-539/+864
| | | | | | 2) new usage for h5repack and new command line parsing using the tools library parsing code tested: windows, linux, solaris
* [svn-r14262] Description:Quincey Koziol2007-11-151-2/+2
| | | | | | | | Correct "off by one" error in computing the size of block to allocate when the I/O size is less than the memory block size. Tested on: Customer machines, by local developer...
* [svn-r14261] bug fix: new syntax for the h5diff call in the h5dopy shell scriptPedro Vicente Nunes2007-11-141-2/+2
| | | | tested: linux
* [svn-r14260] bug fix: modified the h5repack script to call h5diff with its ↵Pedro Vicente Nunes2007-11-141-2/+2
| | | | | | brand new syntax tested: linux
* [svn-r14259] New feature: removed one test and file from the h5diff shell ↵Pedro Vicente Nunes2007-11-132-55/+0
| | | | | | script that prints an error message that has an absolute path (invalid option), thus not suitable for the multi platform test
* [svn-r14258] new feature: make h5diff use the same command line parsing code ↵Pedro Vicente Nunes2007-11-1366-167/+357
| | | | | | | | | and syntax than h5dump usage is now h5diff [OPTIONS] file1 file2 [obj1[obj2]] tested: windows, linux, solaris
* [svn-r14256] bug fix: h5diff did not handle NaNsPedro Vicente Nunes2007-11-131-2/+228
| | | | | | | solution: added a NaN detection function according to RFC http://www.hdfgroup.uiuc.edu/RFC/HDF5/NaNs_and_HDF5/ tested: windows XP Vs6, linux, freeBsd, solaris 5.10
* [svn-r14255] Purpose: Add h5tinit.c to default Windows build processScott Wegner2007-11-139-463/+408
| | | | | | | | | Description: Previously, we provided a static h5tinit.c with our Windows distribution, and provided instructions to optionally generate it. Now, we will incorporate it as part of the default build process, to emulate other platforms more closely. Tested: VS6 VS2005
* [svn-r14253] Purpose: Update FTP location for Windows external library binariesScott Wegner2007-11-131-12/+6
| | | | | | | | Description: We recently uploaded new versions of our external library binaries to support more compiler configurations. This check-in is to point to the new location in our documentation. Tested: None
* [svn-r14252] Minor change: the test for opening external link twice doesn't ↵Raymond Lu2007-11-121-1/+1
| | | | | | | | work with FAMILY driver. Skip the test if it is. Tested on kagiso.
* [svn-r14251] Description:Quincey Koziol2007-11-121-3/+7
| | | | | | | | | Move setting the "update the dataset's dataspace" flag later in the process of changing it's extent. Also add explicit check for having write access to file, before attempting to perform any actions for changing the extent. Tested on: Linux/64 2.4 (smirom) w/parallel
* [svn-r14250] Description:Quincey Koziol2007-11-104-99/+119
| | | | | | | | | | | | | | | | | | | | | - Changed name of chunk mapping structure from "fm_map" to "H5D_chunk_map_t" - Pushed parallel I/O specific fields into ifdef'ed sections, when building chunk map - Took out most calls to IS_H5FD_MPI macro Tested on: FreeBSD/32 6.2 (duty) in debug mode FreeBSD/64 6.2 (liberty) w/C++ & FORTRAN, in debug mode Linux/32 2.6 (kagiso) w/PGI compilers, w/C++ & FORTRAN, w/threadsafe, in debug mode Linux/64-amd64 2.6 (smirom) w/default API=1.6.x, w/C++ & FORTRAN, in production mode Linux/64-ia64 2.6 (cobalt) w/Intel compilers, w/C++ & FORTRAN, in production mode Solaris/32 2.10 (linew) w/deprecated symbols disabled, w/C++ & FORTRAN, w/szip filter, in production mode Mac OS X/32 10.4.10 (amazon) in debug mode Linux/64-ia64 2.4 (tg-login3) w/parallel, w/FORTRAN, in production mode
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