summaryrefslogtreecommitdiffstats
Commit message (Collapse)AuthorAgeFilesLines
* Added .gitignore and .gitattributes files with contents from the lastlrknox2016-09-013-1/+980
| | | | | | git mirror or the hdf5 repository prior to the manual migration of the hdf5 svn repository to the git repository in bitbucket. Added entries to MANIFEST for the 2 new files.
* Merge pull request #4 in HDFFV/hdf5 from ~LRKNOX/hdf5_lrk:hdf5_1_8 to hdf5_1_8Larry Knox2016-08-311-5/+14
| | | | | | | * commit '5aee5213190f145b5a734f5dc76a67c82f7d6b82': emoved .gitattributes and .gitignore, as the manual migration did not create them. Corrected bbrelease script to create new release version with revision hash. Translate svn commands to git commands for chkmanifest and bbrelease scripts with source in git repository. Removed the -p option from the command to run autogen.sh. It interfered with running chkmanifest on a machine with the correct autotools versions but without access to /usr/hdf/bin/AUTOTOOLS. The autogen.sh script says the option is for HDF group use only and is likely to be removed. The same effect can be achieved by adding /usr/hdf/bin/AUTOTOOLS to the beginning of PATH. Removed the -p option from the command to run autogen.sh. It interfered with running chkmanifest on a machine with the correct autotools versions but without access to /usr/hdf/bin/AUTOTOOLS. The autogen.sh script says the option is for HDF group use only and is likely to be removed. The same effect can be achieved by adding /usr/hdf/bin/AUTOTOOLS to the beginning of PATH.
* Removed the -p option from the command to run autogen.sh. It interferedlrknox2016-08-301-2/+2
| | | | | | | | with running chkmanifest on a machine with the correct autotools versions but without access to /usr/hdf/bin/AUTOTOOLS. The autogen.sh script says the option is for HDF group use only and is likely to be removed. The same effect can be achieved by adding /usr/hdf/bin/AUTOTOOLS to the beginning of PATH.
* Translate svn commands to git commands for chkmanifest and bbreleaselrknox2016-08-292-13/+15
| | | | scripts with source in git repository.
* [svn-r30321] HDFFV-9974: Correct parsing of UD filter parameters.Allen Byrne2016-08-254-8/+18
| | | | Verified by user, who reported issue.
* [svn-r30319] Fix for daily test failure on emu -m64 for the checkin #30310. Vailin Choi2016-08-241-0/+0
| | | | Tested on emu (-m64 & -m32), platypus, mayll, moohan, osx1010test, quail, kituo, ostrich, kite.
* [svn-r30318] whitespace cleanupAllen Byrne2016-08-241-28/+28
|
* [svn-r30317] Whitespace cleanupAllen Byrne2016-08-241-364/+297
|
* [svn-r30316] Use dns name for CDash instead of ip addressAllen Byrne2016-08-221-1/+1
|
* [svn-r30315] HDFFV-9972: Fix test reference and change default for ↵Allen Byrne2016-08-225-14/+14
| | | | H5Iget_name in JNI API.
* [svn-r30314] HDFFV-9971: Change the usage of a CMake variable for the build ↵Allen Byrne2016-08-2210-44/+55
| | | | type to the recommended variable name. Updated documentation.
* [svn-r30313] HDFFV-9972: unsatisfied link error under debug on Windows.Allen Byrne2016-08-2224-1632/+1626
| | | | | | | | | | Added windows name suffix for debug to CMake cmd_arg for examples and test. Fix issues discovered under debug testing; Create a version of H5Iget_name that correctly returns the name. Rework PIN_JAVA_STRING macro and usage to eliminate possible memory leaks by using if-else instead of mid-routine return. Update example to use new H5Iget_name API. Tested: windows under debug
* [svn-r30312] HDFFV-9706: Commit changes as discussed in HDF5-379.Allen Byrne2016-08-221-25/+32
|
* [svn-r30311] Purpose: Fix bug HDFFR-9920 cont.Binh-Minh Ribler2016-08-2224-411/+374
| | | | | | | | | | | | | | | | | | | | | | | | | | trunk: Description: Continued rearranging the classes to model the relationship of HDF5 objects more accurately. The changes included: - in the baseclass list of Attribute, changed "public IdComponent" to "public H5Location", because location sometime can be specified with attribute - moved H5A wrappers in H5Location to H5Object because H5A functions can't be called on attribute id - removed the stubs Attribute::iterateAttrs and Attribute::renameAttr - removed Attribute::getFileName and Attribute::flush, because H5Location has them - result of the modified partial class diagram, regarding Attribute IdComponent | H5Location AbstractDs / \ / H5Object Attribute Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r30310] Fix daily test failure for previous checkin #30308.Vailin Choi2016-08-223-1/+1
| | | | Tested on platypus and mayll.
* [svn-r30309] Purpose: Fix bug HDFFR-9920Binh-Minh Ribler2016-08-2023-1408/+1541
| | | | | | | | | | | | | | | | | | | | | | | | | | | Description: Rearranged the classes to model the relationship of HDF5 objects more accurately. The changes included: - moved CommonFG's methods to Group - removed CommonFG from Group's base class list - removed CommonFG from H5File's base class list and changed "public H5Location" to "public Group" in the base class list - CommonFG became unused - result of the modified partial class diagram: IdComponent | H5Location / H5Object | / / \ DadaType Group DataSet | H5File Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r30308] Fix for HDFFV-7991--error when copying dataset with attribute ↵Vailin Choi2016-08-196-4/+418
| | | | | | | which is a compound datatype consisting of a variable length string. Tested on mayll, platypus, osx1010test, emu, kituo, kite, quail, moohan, ostrich.
* [svn-r30306] Updated vfd test to be better about fapls and h5_reset().Dana Robinson2016-08-191-72/+110
| | | | | | | | | | | Prevents the test from segfaulting in other sub-tests when a previous test fails. Tested on: 64-bit Ubuntu Linux 16.04 LTS w/ gcc 5.4.0 Autotools serial + direct VFD (vfd test only) Also tested with a forced error to ensure that the test no longer segfaults and confirmed that all test files are cleaned up.
* [svn-r30303] Fixed unbalanced parentheses in H5F_SAME_SHARED macro. Dana Robinson2016-08-181-1/+1
| | | | | | | | This version of the macro isn't used anywhere in the HDF5 source. Tested on: 64-bit Ubuntu Linux 16.04 LTS w/ gcc 5.4.0 Autotools serial
* [svn-r30301] Changed the print ordering of the SIZE_OF/KIND program output ↵Scot Breitenfeld2016-08-181-9/+9
| | | | | | in order to match what is done in cmake. Tested: gnu, jelly.
* [svn-r30300] Fixed the ordering for KIND and SIZE_OF in the fortarn program ↵Scot Breitenfeld2016-08-181-3/+3
| | | | | | | | in order to match the sed commands. Should only matter for the NAG compiler. Tested: (gnu, jelly)
* [svn-r30297] Changed FAIL_STACK_ERROR to TEST_ERROR in test/vfd.c.Dana Robinson2016-08-181-51/+51
| | | | | Tested on: 64-bit Ubuntu Linux 16.04 LTS w/ gcc 5.4.0 Autotools serial, vfd test only
* [svn-r30295] Minor whitespace cleanup in h5test.c.Dana Robinson2016-08-171-45/+55
| | | | | Tested on: 64-bit Ubuntu 16.04 LTS w/ gcc 5.4.0 Autotools serial w/ make check-vfd
* [svn-r30292] Description:Quincey Koziol2016-08-161-1/+1
| | | | | | | | Correct failure on older Windows compilers. Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r30289] Fix for HDFFV-9960 H5DOappend without append callback.Vailin Choi2016-08-141-20/+18
| | | | | This is the second part of the fix--see crucible review HDF5-383. Tested on mayll, platypus, osx1010test, emu, kituo, kite, quail, moohan, ostrich.
* [svn-r30285] Description:Quincey Koziol2016-08-1331-350/+331
| | | | | | | | | More warning cleanups, bringing the build down to 25 unique types of warnings, with 550 warnings in 122 files (down from 28, 770, and 134). Tested on: MacOSX/64 10.11.5 (amazon) w/serial & parallel (h5committest forthcoming)
* [svn-r30279] Purpose: Code improvement (HDFFR-9725)Binh-Minh Ribler2016-08-1213-101/+78
| | | | | | | | | Description: Removed deprecated functions in previous releases due to missing const. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r30275] Rework test_mf_bug1 to work with multi and split drivers.Neil Fortner2016-08-091-66/+106
| | | | Tested: ummon
* [svn-r30272] Purpose: Code improvementBinh-Minh Ribler2016-08-099-82/+37
| | | | | | | | | | | Description: - Added "const" to arguments that should be const - Added "const" to const functions, i.e., function that don't change the objects they operate on. Platforms tested: Linux/32 2.6 (jam) Linux/64 (platypus) Darwin (osx1010test)
* [svn-r30270] Fix an issue that could occur when allocating a chunked dataset ↵Neil Fortner2016-08-084-4/+112
| | | | | | | | | in parallel, with an alignment threshold set to be larger than the chunk size but smaller than the size of the small data aggregator. Tested: koala, ostrich (h5committest); jelly, ummon
* [svn-r30268] Remove failure causing code in test/mf.c unintentionally added ↵Neil Fortner2016-08-081-1/+1
| | | | in r30264.
* [svn-r30266] Add support for GIT to external filter accessAllen Byrne2016-08-081-17/+20
|
* [svn-r30264] Fixed an issue that could occur when using H5Pset_alignment ↵Neil Fortner2016-08-082-18/+144
| | | | | | | | where a block could be unaligned, causing an assertion failure. Tested: koala, ostrich, jelly (h5committest), ummon
* [svn-r30262] Fix for HDFFV-9960: H5DOappend will not fail if a dataset has ↵Vailin Choi2016-08-052-3/+106
| | | | | | no append callback registered. Tested on mayll, platypus, osx1010test, emu, moohan, kituo, ostrich, kite, quail.
* [svn-r30259] Fixed: HDFFV-9965: HDF5 Fails to build when sizeof or c_sizeof ↵Scot Breitenfeld2016-08-051-1/+5
| | | | | | | | is not available in Fortran Added the use of 'storage_size' if 'c_sizeof' is not available. Tested (jelly, intel)
* [svn-r30254] Add missing importAllen Byrne2016-08-031-0/+1
|
* [svn-r30251] Ignore dlopen test - created HDFFV-9962Allen Byrne2016-08-022-3/+2
|
* [svn-r30250] Correct position of finally block for testAllen Byrne2016-08-021-16/+16
|
* [svn-r30245] remove incorrect copyAllen Byrne2016-08-011-6/+0
|
* [svn-r30243] Correct spellingAllen Byrne2016-08-011-1/+1
|
* [svn-r30242] Cygwin does not implement the getpwuid the same as linux.Allen Byrne2016-08-011-2/+2
|
* [svn-r30241] JAVA-1920: new filter for tests.Allen Byrne2016-08-011-0/+104
|
* [svn-r30240] JAVA-1920: Create a filter plugin test that has a filter which ↵Allen Byrne2016-08-017-7/+176
| | | | calls a HDF5 function.
* [svn-r30238] Follow-on to HDFFV-9928: remove unconditional call of time.h ↵Allen Byrne2016-08-0111-29/+0
| | | | type headers. Also remove duplicated includes when h5private.h is used.
* [svn-r30237] HDFFV-9939: Change cmake commands to reduce POST_BUILD custom ↵Allen Byrne2016-08-0125-532/+197
| | | | commands. Fixes possible overruns on windows command lines.
* [svn-r30236] HDFFV-9928: remove duplicate and unconditional includes in ↵Allen Byrne2016-08-012-12/+6
| | | | | | h5diff_array. Also format function block in h5diff_attr to eliminate excessive whitespace
* [svn-r30235] HDFFV-9730: Fix functions for delete to use a specific dir ↵Allen Byrne2016-08-0114-14/+14
| | | | instead of a possibly uninitialized variable.
* [svn-r30232] HDFFV-9953, -9955: Add new testfiles to h5dump generator and tests.Allen Byrne2016-08-018-18/+1564
|
* [svn-r30231] HDFFV-9944: else statement and braces.Allen Byrne2016-08-011-17/+24
| | | | refactored out the assert statement since H5MM_xfree allows null argument.
* [svn-r30228] Changed a few printf calls to HDprintf in file_image.c.Dana Robinson2016-07-301-4/+5
| | | | | | | Checked the return value of a read() call to clean up a warning. Tested on: 64-bit Ubuntu Linux 16.04 LTS w/ gcc 5.4.0 Autotools serial, file_image test only