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* [svn-r12394] Purpose: MaintenanceElena Pourmal2006-06-015-15/+15
| | | | | | | | | | | Description: Ran /bin/h5vers to change suffix to alpha4 after creating hdf5-1.8.0-alpha3 tar ball and tagging the release with hdf5_1_8_0_alpha3 tag Solution: Platforms tested: Misc. update:
* [svn-r12392] Purpose: Maintenancehdf5-1_8_0-alpha3Elena Pourmal2006-06-012-2/+2
| | | | | | | | | | | Description: Checking in files modifed by the bin/release script before tagging hdf5-1.8.0-alpha3 Solution: Platforms tested: Misc. update:
* [svn-r12391] Purpose: Update.Raymond Lu2006-06-011-0/+2
| | | | | Misc. update: Document some errors in test/dt_arith.c when converting data from long double to (unsigned) long long and from (unsigned) long long to long double.
* [svn-r12390] Purpose: MaintenanceElena Pourmal2006-06-011-9/+17
| | | | | | | | | | | | Description: Updated VMS installation instructions to reflect support for the deflate filter; documented scale+offset test failures when G_FLOAT is used (not IEEE double) Solution: Platforms tested: Misc. update:
* [svn-r12389] Purpose: Bug fixRaymond Lu2006-06-012-8/+8
| | | | | | | | | | Description: There was some logical confusion about the value of the macro H5_HW_FP_TO_LLONG_NOT_WORKS. It's supposed to be true for Windows, but false for Unix machines. Solution: Corrected. Platforms tested: fuss(Linux) and amazon(MacOS 10.4) - simple change.
* [svn-r12388] Purpose: MaintenanceElena Pourmal2006-05-312-2/+18
| | | | | | | | | | Description: dsets and objcopy tests were missing from the command files Solution: Added appropriate commands to compile and run tests Platforms tested: VMS server with native float Misc. update:
* [svn-r12387] Purpose: Bug fix.Raymond Lu2006-05-312-2/+2
| | | | | | | | | Description: Windows doesn't recognize "long long" but "long_long". Solution: The library defined a more general type "long_long". Use it instead. Platforms tested: fuss - simple change.
* [svn-r12386] Purpose:Albert Cheng2006-05-311-27/+42
| | | | | | | | | | | | | | | | | | Added Exress Test mode. Description: The test takes a long time to run. It tempted developers to skip the h5committest. Solution: Added Express Test mode to allow tester an option to run it in express mode (shorter time.) There are already encoded QAK macro which skips many tests. Follow that pattern to skip tests when HDF5TestExpress is set. Platforms tested: Tested in heping, both serial and parallel.
* [svn-r12384] Purpose:Albert Cheng2006-05-291-0/+5
| | | | | | | | | | | | feature. Description: Added the option of -64 which is similar to -n32. This is needed by Atlantia which has the ABI as -n32. Platforms tested: Pretty straight forward but not testable by h5committest. Will be tested when daily tests run.
* [svn-r12380] Purpose:Albert Cheng2006-05-261-43/+400
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Feature (Code and tests are done by Christian. I just committed the code.) Description: Rewrote the purpose of this test. Now it tests these three cases, /* * Test following possible scenarios, * Case 1: * Sequential create a file and dataset with H5D_ALLOC_TIME_EARLY and large * size, no write, close, reopen in parallel, read to verify all return * the fill value. * Case 2: * Sequential create a file and dataset with H5D_ALLOC_TIME_EARLY but small * size, no write, close, reopen in parallel, extend to large size, then close, * then reopen in parallel and read to verify all return the fill value. * Case 3: * Sequential create a file and dataset with H5D_ALLOC_TIME_EARLY and large * size, write just a small part of the dataset (second to the last), close, * then reopen in parallel, read to verify all return the fill value except * those small portion that has been written. Without closing it, writes * all parts of the dataset in a interleave pattern, close it, and reopen * it, read to verify all data are as written. */ Platforms tested: Tested in copper, tg-ncsa and heping, all in parallel mode.
* [svn-r12379] Purpose:James Laird2006-05-262-5/+7
| | | | | | | | | | | | | | | Bug fix Description: tg-login was having an error about H5match_types.Tpo being missing. Solution: tg-login was trying to build H5_match_types twice at the same time and becoming confused as a result. Massaged the dependencies in the Makefile.am to prevent this. Platforms tested: mir, sol, tg-login
* [svn-r12378] Purpose: MaintenanceElena Pourmal2006-05-251-1/+2
| | | | | | | | | | | Description: Added location of the zlib library compiled with /float=ieee_float flag Solution: Platforms tested: VMS server Misc. update:
* [svn-r12377] Purpose: MaintenanceElena Pourmal2006-05-252-4/+5
| | | | | | | | | | Description: Brought up VMS make files up to date Solution: Platforms tested: VMS server with native floating number and ZLIB enabled Misc. update:
* [svn-r12375] Purpose: UpdateRaymond Lu2006-05-241-0/+1
| | | | | | | Solution: Misc. update: added hl/test/dtype_file_readable.txt
* [svn-r12374] Purpose:John Mainzer2006-05-249-1312/+1512
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | 1) Check in potential fix to unreproduceable bug in t_cache observed on Cobalt 2) Check in code supporting added pinned entry features in the metadata cache. Description: 1) Elena encountered a bug in t_cache when running on Cobalt. On investigation I found a potential race condition in t_cache that could explain her observation. 2) Quincey requested additions to the metadata cache allowing renaming of pinned entryies, and marking of pinned or protected entries as dirty. Solution: 1) Modified t_cache.c to prevent the potential race condition. Elena was unable to reproduce the bug on Cobalt, so we don't know if my fix actually addressed the problem. 2) Added code supporting the requested functions. The changes were relatively trivial, but required substantial new test code. Platforms tested: h5committest, serial test on heping, parallel test on phoenix. Misc. update:
* [svn-r12373] Purpose: Add debug information.Raymond Lu2006-05-231-0/+2507
| | | | | | | | | Description: dtype_file.txt is a text file for testing complicated compound type for H5LTtext_to_dtype(). dtype_file_readable.txt is just a human-readable version of dtype_file.txt for debugging purpose. Platforms tested: No test.
* [svn-r12372] Purpose:James Laird2006-05-234-2/+7
| | | | | | | | | | | Makefile cleanup Description: Cleaned up where files were distcleaned Platforms tested: mir (change only affects distclean)
* [svn-r12371] Purpose: RecommitRaymond Lu2006-05-231-0/+18
| | | | Description: Copyright was missing from last commit.
* [svn-r12370] Purpose: Bug fix.Raymond Lu2006-05-233-102/+130
| | | | | | | | | | Description: The current code in Yacc parser doesn't handle big-endian machine for enum type correctly. Solution: Depending on the super type of enum, use appropriate integer type to pass in enum value. Platforms tested: h5committest and fuss.
* [svn-r12369] Purpose: Fixed bugBinh-Minh Ribler2006-05-231-5/+5
| | | | | | | | | | | | | | | | | Description: Shanti compiler destroy unnamed objects later than others, which caused some reference counting test fail. Revised the test so that destructors are called at the same time, regardless the differences of compiler implementation. Revised some constructors, close, operator=, and destructors to make sure that all the object ids are handled properly. Platforms tested: Linux 2.4 (heping) SunOS 5.9 (shanti) HPUX 11.00 (kelgia) AIX 5.1 (copper)
* [svn-r12368] Purpose: Fixed bugBinh-Minh Ribler2006-05-2310-163/+166
| | | | | | | | | | | | | | | | | Description: Shanti compiler destroy unnamed objects later than others, which caused some reference counting test fail. Revised the test so that destructors are called at the same time, regardless the differences of compiler implementation. Revised some constructors, close, operator=, and destructors to make sure that all the object ids are handled properly. Platforms tested: Linux 2.4 (heping) SunOS 5.9 (shanti) HPUX 11.00 (kelgia) AIX 5.1 (copper)
* [svn-r12366] Purpose:Albert Cheng2006-05-231-4/+4
| | | | | | | | | | | | | | | | fix. Description: More machines stop supporting "rsh machine command". Worse yet, it hangs the "rsh machine command" process. Solution: Switch the order of testing remote execution to use ssh first, then rsh. Platforms tested: no h5committest since it does not test this command. Change is trivial and will monitor Daily test tonight.
* [svn-r12365] Purpose:Quincey Koziol2006-05-234-9/+9
| | | | | | | | | | | Code checkpoint Description: Add a few minor tweaks & corrections to the fractal heap code. Platforms tested: Linux 2.4 (chicago) Too minor to require h5committest
* [svn-r12364] Purpose:Quincey Koziol2006-05-231-2/+2
| | | | | | | | | | | Portability fix Description: Try again to placate the VS 6.0 compiler Platforms tested: Linux 2.4 (chicago) Too minor to require h5committest
* [svn-r12363] Purpose:Quincey Koziol2006-05-231-2/+2
| | | | | | | | | | | | | Bug fix Description: When destroying the cache for a file, don't disconnect the cache from the file structure until after the cache is shut dow, to allow pinned entries to be unpinned. Platforms tested: Linux 2.4 (chicago) Too minor to require h5committest
* [svn-r12362] Purpose:Quincey Koziol2006-05-2222-536/+3082
| | | | | | | | | | | | | | | | | | | | | Code checkpoint Description: Update fractal heap code to allow objects to be deleted Fix bugs in fractal heap object insertion Improve free space manager code to allow sections to be merged and shrink the container Another try at making the Windows compilers happy... Platforms tested: FreeBSD 4.11 (sleipnir) Mac OS X.4/PPC (amazon) Linux 2.4 (chicago & heping) Solaris 2.9 (shanti) AIX 5.? (copper) w/parallel
* [svn-r12361] Purpose:Albert Cheng2006-05-211-2/+2
| | | | | | | | Document error. Description: The fix of the TR was put in the wrong session (new configure feature). It is moved to the proper session (bug fix on configure.)
* [svn-r12359] Purpose: UpdateRaymond Lu2006-05-191-0/+1
| | | | Misc. update: added hl/test/dtype_file.txt.
* [svn-r12358] Purpose:Albert Cheng2006-05-1942-137/+75
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix. Description: The ${TR}, though avoid the error, is inconvenient. It is needed because configure.in use the char range in the style of 'a-z'. The other style of '[a-z]' is more commonly accepted by all tr but autoconf tends to strip away [], making the syntax rather clumsy. Solution: Learned from autoconf that it avoids the use of character range by just spell all the letters out. Changed our tr commands to use those variables defined by autoconf. Also removed the definition of ${TR} since it will cause inconsistancy when autoconf also use plain 'tr' in its generated code. The Makefile.in are changed because the elimination of ${TR} from configure triggered its removal from all Makefil.in. That is okay because ${TR} is not used at all in Makefile. Platforms tested: h5committested. (sol failed to connected). also tested in shanti using both /usr/ucb/tr and /bin/tr (the bad one before.) Misc. update: Updated both INSTALL and RELEASE files.
* [svn-r12357] Purpose:MuQun Yang2006-05-181-5/+65
| | | | | | | | | | | | | | | | | | | | | | | | | Updating project file Description: Due to the new added source codes under hdf5/src. Solution: Project file has to be changed to reflect this Platforms tested: VS 6.0 ( Failed during compiling because of compiler failure) VS 7.0 Everything okay except that several h5repack tests get skipped. Don't know whether this happens on other platforms. h5repack -i test_scaleoffset.h5 -o out.test_scaleoffset.h5 -f dset_none:S+O=31 - SKIPED- h5repack -i test_scaleoffset.h5 -o out.test_scaleoffset.h5 -SKIP ED- h5repack -i test_scaleoffset.h5 -o out.test_scaleoffset.h5 -f dset_scaleoffset:N ONE -SKIPED- h5repack -i test_all.h5 -o out.test_all.h5 -SKIP ED- Misc. update:
* [svn-r12356] Purpose:MuQun Yang2006-05-181-5/+65
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | Updating project file Description: New source code has been added, project files need to be updated. Solution: Platforms tested: VS 6.0(build failed due to compiler problem) VS 7.1(.Net 2003) Everything okay except that several h5repack tests get skipped. Don't know whether this happens on other platforms. h5repack -i test_scaleoffset.h5 -o out.test_scaleoffset.h5 -f dset_none:S+O=31 - SKIPED- h5repack -i test_scaleoffset.h5 -o out.test_scaleoffset.h5 -SKIP ED- h5repack -i test_scaleoffset.h5 -o out.test_scaleoffset.h5 -f dset_scaleoffset:N ONE -SKIPED- h5repack -i test_all.h5 -o out.test_all.h5 -SKIP ED- Misc. update:
* [svn-r12355] Purpose:Quincey Koziol2006-05-181-3/+3
| | | | | | | | | | Bug fix Description: Avoid using double -> hsize_t conversion, to placate VS 6.0 Platforms tested: None, just eyeballed...
* [svn-r12354] Purpose:Pedro Vicente Nunes2006-05-181-0/+1
| | | | | | | | | | | | | manifest update Description: one new file that was not updated yesterday Solution: Platforms tested: Misc. update:
* [svn-r12353] Purpose:Pedro Vicente Nunes2006-05-175-7/+48
| | | | | | | | | | | | | | | | new function Description: added H5LTfind_attribute as a public function, a wrapper for the already existing private function H5LT_find_attribute Solution: Platforms tested: linux solaris Misc. update:
* [svn-r12352] Purpose: Update document.Raymond Lu2006-05-171-0/+5
| | | | Misc. update: Update this document for H5LTtext_to_dtype and H5LTdtype_to_text.
* [svn-r12351] Purpose: Follow-up what's committed yesterday.Raymond Lu2006-05-174-71/+170
| | | | | | | | | | | | Description: Yesterday, a definition of the macro YY_BUF_SIZE of 256KB was committed in, but copper complained it can't be redefined. Solution: Added #ifdef and #undef to make sure the macro is undefined first. Also integrated a complicated compound type test. It reads input from a text file. The datatype is unusually large, of 101 member fields. Platforms tested: h5committest and fuss.
* [svn-r12350] Purpose: Increase capacityRaymond Lu2006-05-162-72/+87
| | | | | | | | | | Description: The default size for input buffer of Lex is only 8K. Some application has input string far bigger than it. Solution: Increase the size by defining YY_BUFFER_SIZE to be 256K (262144) in H5LTanalyze.l Platforms tested: fuss - simple change.
* [svn-r12349] Purpose:Quincey Koziol2006-05-1538-2526/+6665
| | | | | | | | | | | | | | | Code checkpoint Description: Checkpoint fractal heap improvements, as well as move the free space manager code that it's using into a separate package. Platforms tested: FreeBSD 4.11 (sleipnir) Linux 2.4/64 (mir) w/C++ & FORTRAN Linux 2.4/32 (heping) Solaris 2.9 (shanti) AIX 5.? (copper) w/FORTRAN & parallel
* [svn-r12348] Purpose:Albert Cheng2006-05-144-13/+183
| | | | | | | | | | | | | | | | | | Bug fix. Description: Some machines (e.g., HPUX) will have off64_t defined but no support for stat64 unless certain LargeFile macro is turned on. This caused the last fix on H5private not quite right which caused compiling failures. Solution: Added stat64 and fstat64 tests and then will use them only if they are supported. Platforms tested: Tested on kelgia, copper and heping (pll). (Compiling alright but tests for kelgia and heping are not done. expect no problems.)
* [svn-r12347] Purpose: Maintenance/bug fixElena Pourmal2006-05-144-1/+67
| | | | | | | | | | | | | | | | Description: When --enable-group-revision flag was used, h5fget_filesize_f function returned different value from expected one. Test failed with false negative result. Solution: Added Fortran function h5_group_revision_f and its C stub to check if macro H5_GROUP_REVISION is defined. Expected value from h5fget_filesize_f is set up accordingly. Platforms tested: copper, shanti and heping with and without --enable-group-revision configuration flag Misc. update:
* [svn-r12346] Purpose: new feature/maintenanceElena Pourmal2006-05-1214-94/+97
| | | | | | | | | | | | Description: Added support for Zlib compression on VMS Solution: Modified command files to add compilation and linking with the ZLIB library. Platforms tested: VMS servere with the VAX floating datatype; will test IEEE option later Misc. update:
* [svn-r12345] Purpose: Codes for backward compatibility.Raymond Lu2006-05-129-40/+225
| | | | | | | | | | Description: Function prototype H5E_walk_t and structure H5E_error_t wasn't backward compatible. Solution: Make them compatible with v1.6 and provide new definitions of H5E_walk_stack_t and H5E_error_stack_t. Platforms tested: fuss and h5committest.
* [svn-r12344] Purpose:Albert Cheng2006-05-121-1/+4
| | | | | | | | | | | | | | | | | | | | Bug fix. Description: C++ testhdf5 failed when it tried to inspect the size of a file via the HDstat call. The reason was that the CFLAGS has -D_LARGE_FILES hardset in it while the CXXFLAGS does not. So, C is using an off_t that is 8 bytes while C++ is using off_t as 4 bytes. C is using a version of 64bits stat/off_t/etc while C++ uses the 32 bits version. Thus a failure. Solution: Added -D_LARGE_FILES to $CXXFLAGES so that both C and C++ are using the same version of stat/off_t/etc. Platforms tested: Tested in Copper only, both 32 and 64 bits since the changes affected the AIX platform only.
* [svn-r12343] Purpose:MuQun Yang2006-05-111-16/+48
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Bug fix for collective chunk IO Description: Several options have been provided inside HDF5 library for obtaining chunk addresses when doing collective chunk IO. One option is to obtain chunk addresses for one process and broadcast to other processes. This option needs all processes to participate. If using link-chunked IO without any optimizations, sometimes this is not true due to the random initialization for one variable at mpich 1.2.7. This is a bug inside the collective chunk IO code. Solution: 1.Initalize all the variables to some safe numbers, 2. Avoid using MPI broadcast to obtain the chunk address if possible until more performance studies have been done. 3. Seems okay to obtain chunk addresses individually for each processor. This option may cover most cases. Platforms tested: h5committest(copper is not usable) NCSA teragrid (mpich 1.2.5) mir 64-bit linux (mpich 1.2.6) Misc. update:
* [svn-r12342] Purpose:Albert Cheng2006-05-104-29/+503
| | | | | | | | | | | | | | | | | | | | | | | | | | | bug fix. Description: Previous H5private.h would attempt to use the off64_t/stat64/etc by checking just sizeof __INT64 being 8. This caused errors in some machines like alpha cluster which is a 64bit machine. Its compiler supports the type __int64 but it does not support off64_t since its off_t is already 64bits big. The above code casued the compiler to complain about the unknown off64_t and such. Solution: H5private.h: Changed the code to use the pseudo standard of off64_t/stat64/etc only if sizeof(off_t) is not 64 bits AND sizeof(off64_t) exists and is 64 bits. This assumes if off64_t is defined, all those stat64, fstat64, etc are supported too. configure.in: configure: Added the testing of sizeof(off64_t) to support the above solution. Platforms tested: h5committested. Also tested at LANL QSC.
* [svn-r12341] Elena Pourmal2006-05-081-0/+1
| | | | | | | | | | | | | | | | | Purpose: Maintenance Description: dtypes.c compilation failed with gcc 4.1 due to the missing prototype of the opaque_funcs function. Failure was reported by a user who tried to build hdf5-1.8.0-alpha2. I reproduced the failure on sleipnir with gcc41 compiler. Solution: Added prototype definition. Platforms tested: sleipnir with gcc41, heping and copper Misc. update:
* [svn-r12339] Purpose: Maintenance after hdf5-1.8.0-alpha2 releaseElena Pourmal2006-05-065-17/+17
| | | | | | | | | | Description: Changed version suffix to alpha3 Solution: ran bin/h5vers script Platforms tested: Misc. update:
* [svn-r12337] Purpose: Maintenancehdf5-1_8_0-alpha2Elena Pourmal2006-05-062-2/+2
| | | | | | | | | | | | Description: Comitting files modified by the bin/release script before tagging the release. Solution: Platforms tested: released tar ball was tested on heping, and copper 64-bit sequential and 32-bit parallel Misc. update:
* [svn-r12336] Purpose: MaintenanceElena Pourmal2006-05-051-8/+3
| | | | | | | | | | Description: Brought file up-to-alpha2 release. Solution: Platforms tested: Misc. update:
* [svn-r12335] Purpose: MaintenanceElena Pourmal2006-05-051-5/+8
| | | | | | | | | | | | Description: Added information about compilation problems on Altix SGI with Intel v9.0 compilers for testmeta.c test Marked platforms on which alpha2 was not tested. Solution: Platforms tested: Misc. update:
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