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* [svn-r11071] MuQun Yang2005-07-131-11/+14
| | | | | | | | | | | | | Purpose: Update collective IO support status. Description: Solution: Platforms tested: Misc. update:
* [svn-r11070] MuQun Yang2005-07-131-2/+19
| | | | | | | | | | | | | | | | | | Purpose: Make collective IO tests work with mpiposix Description: Although internally HDF5 is using independent IO for mpiposix driver, it is still a good test to see whether HDF5 APIs can allow collective IO calls to pass into mpiposix driver. Previous tests ignore this test; now add it. Solution: Platforms tested: AIX (copper), too minor to need to test with three platforms. Misc. update:
* [svn-r11069] Purpose:Leon Arber2005-07-131-1/+2
| | | | | | | | | | | | | | | | Bug fix Description: The testh5diff.sh script fails on mcr because of random srun messages thrown into the output Solution: Added some code to filter out the srun messages before the output is compared. Platforms tested: LLNL mcr Misc. update:
* [svn-r11068] Purpose:Fang Guo2005-07-121-1/+21
| | | | | | | | | | | Maintenance for windows Description: Fix h5repack test problems with test1.h5 and test2.h5 Solution: Platforms tested: Misc. update:
* [svn-r11067] Purpose:MuQun Yang2005-07-123-16/+52
| | | | | | | | | | | | | | | | | | Updating phase 2 work of collective IO Description: The current collective IO tests cannot test for number of processors bigger than some values, this change will lift those restriction. However, the test may be slower. Solution: Platforms tested: linux 2.4, AIX 5.1, Linux 2.4 IA64 and IRIX 6.5 (I haven't tested big number of processors with the restriction of the machine) Misc. update:
* [svn-r11066] Purpose:MuQun Yang2005-07-121-1/+15
| | | | | | | | | | | | | | | | | | | Updating phase 2 work of collective IO Description: When the size is bigger than some value for MPI derived data type, mpich 1.2.5 and lower version won't work any more, so in the configuration file, we will check the version number and switch from collective IO to independent IO by turning off complex derived datatype. Solution: Platforms tested: linux 2.4, AIX 5.1, Linux 2.4 IA64 and IRIX 6.5 Misc. update:
* [svn-r11065] Purpose:MuQun Yang2005-07-121-0/+17
| | | | | | | | | | | | | | | | Updating phase 2 work of collective IO Description: When the size is bigger than some value for MPI derived data type, mpich 1.2.5 and lower version won't work any more, so in the configuration file, we will check the version number and switch from collective IO to independent IO by turning off complex derived datatype. Solution: Platforms tested: linux 2.4, AIX 5.1, Linux 2.4 IA64 and IRIX 6.5 Misc. update:
* [svn-r11063] Purpose:Leon Arber2005-07-111-4/+4
| | | | | | | | | | | | | | | | Bug fix Description: An earlier bug fix to plotting when the minimum number of processors was not 1 caused the -procs argument to be ignored. Solution: Added a check to see what the -procs argument was set to and plot accordingly. Platforms tested: colonelk Misc. update:
* [svn-r11062] Purpose:Albert Cheng2005-07-112-2/+8
| | | | | | | | | | | | bug fix Description: rwdsetexample and attrexample both modify the same file created by dsetexample. Need to serialize all three of them. Platforms tested: Did 50 times of make check in fortran/examples. It used to fail at least once. Now it does not fail.
* [svn-r11060] Purpose: Fix bug (reported by user)Binh-Minh Ribler2005-07-1014-87/+173
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | Description: The use of FileCreatPropList::DEFAULT sometimes caused failure in the reference counting area. This occurs to all the default property lists, which also include FileAccPropList::DEFAULT, DSetCreatPropList::DEFAULT, and DSetMemXferPropList::DEFAULT. H5P_DEFAULT was used to create these default prop lists and because its value is 0, the id of these prop lists are 0, which is rejected by the H5I functions during the reference counting. Solution: The main action to fix the above problem was to use H5P_FILE_CREATE H5P_FILE_ACCESS H5P_DATASET_CREATE H5P_DATASET_XFER to define the default property lists accordingly. Yet, when this fix was applied, some bug in reference counting was revealed. It appeared that some ids were not incremented but were passed in for decrementing. The following actions were then taken to fix and improve the current use of reference counting H5I functions. * added private func IdComponent::p_valid_id to verify that the id is a valid id and can be passed into an H5I function * used p_valid_id to validate an id before calling an H5I functions in the reference-counting member functions incRefCount, decRefCount, and getCounter * changed to use member function incRefCount, decRefCount, and getCounter instead of the C APIs H5Iinc_ref, H5Idec_ref, and H5Iget_ref throughout IdComponent. In addition, overloadings were added for incRefCount, decRefCount, and getCounter to take an id different than the id of the current instance; they can be convenient during debugging. Platforms tested: Linux 2.4 (heping) SunOS 5.8 64-bit (sol) AIX 5.1 (copper)
* [svn-r11057] Purpose:Quincey Koziol2005-07-093-3/+57
| | | | | | | | | | | | | | | Bug fix Description: Correct error where the dataset sieve buffer was inadvertantly disabled, resulting in poor raw data I/O performance for certain I/O patterns. Solution: Hook dataset sieve buffer size setting back up. Platforms tested: FreeBSD 4.11 (sleipnir) Solaris 2.9 (shanti)
* [svn-r11055] Purpose: Add comment.Raymond Lu2005-07-081-1/+10
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* [svn-r11054] Purpose: Bug fix.Raymond Lu2005-07-082-8/+33
| | | | | | | | | | | | | | | | | Description: There was a bug in the calculating code of the Fletcher32 checksum in the library before v1.6.3. The checksum value wasn't consistent between big-endian and little-endian systems. This bug was fixed in Release 1.6.3. However, after fixing the bug, the checksum value is no longer the same as before on little-endian system. Solution: Made the library compare both the correct checksum and incorrect checksum generated from v1.6.2 or before. This makes the library be backward compatible but not forward compatible. Platforms tested: h5committest and fuss. Misc. update: Documented the forward incompatibility problem in the Known Problem section in RELEASE.txt
* [svn-r11053] Purpose:Fang Guo2005-07-081-1/+1
| | | | | | | | | | | Maintenance. Description: Modify path to b_tree_plusdll Solution: Platforms tested: Misc. update:
* [svn-r11052] Purpose:Albert Cheng2005-07-081-2/+5
| | | | | | | | | | | improvement. Description: make the adding of -xopnemp=stabs linking flag only when enable-fortran is set. Platforms tested: Tested in shanti only.
* [svn-r11051] Purpose: MaintenanceElena Pourmal2005-07-081-0/+7
| | | | | | | | | | | | | | | Description: -xopnemp=stabs linking flag is needed on Solaris 2.9 in order to build Fortran library. Solution: Added the flag to LDFLAGS if system version is 5.9 I don't really like the fix since this flag is now always added for 5.9 systems even if Fortran is not enabled. If someone has a better solution, please let me know :-) Platforms tested: shanti, sol Misc. update:
* [svn-r11050] Purpose:Fang Guo2005-07-071-0/+2
| | | | | | | | | | | Update Description: two new project files added. Solution: Platforms tested: Misc. update:
* [svn-r11049] Purpose:Fang Guo2005-07-071-0/+2
| | | | | | | | | | | Update Description: two new project files added Solution: Platforms tested: Misc. update:
* [svn-r11048] Purpose:Fang Guo2005-07-071-1688/+1718
| | | | | | | | | | | Update Description: New project files added Solution: Platforms tested: Visual studio .Net on windows XP Misc. update:
* [svn-r11047] Purpose:Quincey Koziol2005-07-072-0/+6
| | | | | | | | | | | Bug fix Description: Add dependency of flush2 test on flush1 test Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
* [svn-r11046] Purpose: MaintenanceElena Pourmal2005-07-071-2/+0
| | | | | | | | | | | | Description: Removed -DH5_ABSOFT flag for C compiler when Absoft f95 compiler was used; this flag is not needed anymore since we automatically construct names of C functions called from Fortran. Solution: Platforms tested: pommier Misc. update:
* [svn-r11045] Purpose:Fang Guo2005-07-071-0/+60
| | | | | | | | | | | update project file Description: new source codes added (H5BP.c H5BPcache.c H5BPdbg.c and H5BPtest .c) VS: [details about the changes, algorithm, etc...] Platforms tested: MSVS 6.0 on windows XP Misc. update:
* [svn-r11044] Purpose:Fang Guo2005-07-071-0/+60
| | | | | | | | | | | Update project file. Description: New source codes added (H5BP.c H5BPcache.c H5BPdbg.c and H5BPtest.c) Solution: Platforms tested: MSVS 6.0 on windows XP Misc. update:
* [svn-r11043] Purpose:Pedro Vicente Nunes2005-07-073-1/+3
| | | | | | | | | | | | | | new test hor h5repack, to syncronize tests between unix and windows it requires a new file added Description: Solution: Platforms tested: linux Misc. update:
* [svn-r11042] Purpose:Quincey Koziol2005-07-0735-245/+245
| | | | | | | | | | | | | | | | | | Bug fix Description: The ".chksh" file for a test script was being created in the "source" location rather than the build location. This can cause problems when multiple builds are running because "slower" machines will see the ".cshsh" file from faster machines and will not run the test script as they should. Solution: Use 'basename' command to strip off the path of the script and create the ".chksh" file in the build location. Platforms tested: FreeBSD 4.11 (sleipnir) h5committest
* [svn-r11041] Purpose:Fang Guo2005-07-071-0/+2
| | | | | | | | | | | Add new proejct files. Description: Solution: Platforms tested: Misc. update:
* [svn-r11040] Purpose:Fang Guo2005-07-071-0/+7
| | | | | | | | | | | test on b+tree added Description: Solution: Platforms tested: Misc. update:
* [svn-r11039] Purpose:Fang Guo2005-07-071-0/+42
| | | | | | | | | | | Update workspace Description: New project files added Solution: Platforms tested: Msvs 6.0 on windows XP Misc. update:
* [svn-r11038] Purpose:Fang Guo2005-07-071-0/+107
| | | | | | | | | | | | Catch up with linux. Description: dll b+tree project file b_plus_treedll.dsp was added due to b+tree.c added on July 6 Solution: Platforms tested: MSVS 6.0 on windows XP Misc. update:
* [svn-r11037] Purpose:Fang Guo2005-07-071-0/+107
| | | | | | | | | | | Catch up with Linux. Description: b_plus_tree.dsp was added for windows due to new source code b+tree.c added On July 6 Solution: Platforms tested: MSVS 6.0 on windows XP Misc. update:
* [svn-r11036] Purpose:Fang Guo2005-07-072-65/+38
| | | | | | | | | | | | Modification on .Net and Intel part Description: In batch mode, there should be no options to choose build Only HDF5 C or both C and C++ library with visual studio .net or intel compiler for the time being Solution: Platforms tested: Misc. update:
* [svn-r11035] Purpose:Albert Cheng2005-07-071-3/+5
| | | | | | | | | | | Improvement Description: Added some argument sanity chechking by ensuring exactly two arguments are provided. Platforms tested: sol.
* [svn-r11034] Purpose:Albert Cheng2005-07-0737-140/+98
| | | | | | | | | | | | | | | | | bug fix. Description: -nt is not a universal option for the test command in all platforms. The use of it in conclude.am cause some platforms to bark at the Makefile generated. Solution: Created a command script bin/newer which tests if file1 is newer than file2. Replace the "test file1 -nt file2" by "newer file1 file2". Platforms tested: Tested in sol.
* [svn-r11033] Purpose:Leon Arber2005-07-061-1/+1
| | | | | | | | | | | | | | | | | | Feature Description: gen_report.pl throws away the plotting commands used to make the plots in gnuplot. Solution: Deciding that these commands may be useful if the someone wants to reproduce the plots (or, more importantly, manipulate them further in gnuplot), the commands are now saved in a file called gnuplot.script Platforms tested: colonelk Misc. update:
* [svn-r11032] Purpose:Quincey Koziol2005-07-061-0/+8
| | | | Update with newly added files.
* [svn-r11031] Purpose:Quincey Koziol2005-07-0618-45/+2182
| | | | | | | | | | | | | New feature Description: Initial checkin of B+ Tree code. Platforms tested: FreeBSD 4.11 (sleipnir) h5committest Misc. update:
* [svn-r11029] Purpose:Fang Guo2005-07-051-1688/+1688
| | | | | | | | | | | Update solution file Description: New source codes added. Solution: Platforms tested: Visual studio .Net 2003 on Windows XP. Misc. update:
* [svn-r11028] Purpose:Fang Guo2005-07-051-0/+30
| | | | | | | | | | | Update project files Description: New source codes H5Fmount.c and H5Fsuper.c added. Solution: Platforms tested: MSVS 6.0 on Windows XP. Misc. update:
* [svn-r11027] Purpose:Fang Guo2005-07-051-0/+30
| | | | | | | | | | | Update project file. Description: New source code H5Fmount.c and H5Fsuper.c added Solution: Platforms tested: MSVS 6.0 on windows XP. Misc. update:
* [svn-r11025] Purpose:Quincey Koziol2005-07-051-0/+2
| | | | | | | | | | | | Add new source code files Description: Solution: Platforms tested: Misc. update:
* [svn-r11022] Purpose:Quincey Koziol2005-07-0513-1183/+1617
| | | | | | | | | | | | | | | | | | | | Bug fix & code cleanup Description: Don't unmount child files from a parent file if the parent file is being held open by an object. Also, moved the mounting routines into their own source file and the superblock routines into their own file also. Solution: Moved the code for unmounting child files down in the H5F_close routine and also add checks to the file and group mounting code to unmount child files when the last object holding open a file closes. Platforms tested: FreeBSD 4.11 (sleipnir) h5committest
* [svn-r11020] Purpose:Leon Arber2005-07-051-4/+5
| | | | | | | | | | | | | | | | Bug fix Description: When plotting, if the minimum number of processors was not 1, gen_report.pl would fail. Solution: The minimum number of processors in the datafile was inadvertantly hard-coded to be 1. Fixed it to dynamically determine the number of processors from the data. Platforms tested: colonelk. Misc. update:
* [svn-r11019] Purpose: Add detectionRaymond Lu2005-07-053-21/+13
| | | | | | | | | | | Description: pgcc version 6.0x have optimization (-O, -O2, or -O3) problem. It caused multi driver test to fail. The problem happened in a macro definition. Solution: Detect these versions and add option "-Mx,28,0x8" to the compiler to avoid the problem if optimization is enable. Platforms tested: mir and fuss - simple change.
* [svn-r11018] Purpose:James Laird2005-07-052-0/+2
| | | | | | | | | | | | | Bug fix Description: Fixed error in Fortran examples on modi4. Solution: Added another dependency in the Fortran examples. Platforms tested: mir, modi4 (serial and parallel)
* [svn-r11017] Purpose:Pedro Vicente Nunes2005-07-051-1/+1
| | | | | | | | | | | | | | | bug fix Description: a string buffer did not had space for the trailing null Solution: add one more element to the buffer Platforms tested: linux Misc. update:
* [svn-r11016] Purpose:James Laird2005-07-046-0/+24
| | | | | | | | | | | | | | | | Bug fix Description: Added dependencies to examples Makefiles so that examples can be run in parallel. Solution: The examples directories (for C, C++, and Fortran) all have some dependencies explicitly spelled out in their Makefiles.am. This is a good short-term solution, and should prevent errors in the Daily Tests. Platforms tested: mir, modi4 (parallel and sequential)
* [svn-r11014] Purpose:Quincey Koziol2005-07-0229-732/+444
| | | | | | | | | | | | Code cleanup Description: Refactor metadata cache to merge "dirtied" flag in with other flags for H5AC_unprotect and H5C_unprotect. Platforms tested: FreeBSD 4.11 (sleipnir) h5committest
* [svn-r11013] Purpose:James Laird2005-07-0136-245/+251
| | | | | | | | | | | | | | | | | | Bug fix Description: Fixed bugs that caused tests to be unable to find testhdf5.sh during daily tests, and another that broke sol and shanti. Solution: When tests are run, their path is ./$testname . When scripts are run, their path has no leading "./". Fixed. Sol and shanti don't recognize the -e option for test, but they do know -f. Fixed. Also modified release notes. Platforms tested: mir, shanti, heping
* [svn-r11011] Purpose:before_removing_docsFang Guo2005-07-011-4/+0
| | | | | | | | | | | | Catch up changes with h5diff Description: output format of h5diff changed when there is no difference found. Solution: Platforms tested: Misc. update:
* [svn-r11009] Purpose:Quincey Koziol2005-07-013-1/+206
| | | | | | | | | | | | | | | | | | Bug fix Description: When a series of files is mounted on one another and one of those files is not unmounted, the library gets confused at shutdown and goes into an infinite loop in the file interface. Solution: If there are still files left in the "closing" state when shutting down the file API, iterate over those file IDs and unmount any child files that we find mounted on those files. Platforms tested: FreeBSD 4.11 (sleipnir) Too minor to require h5committest
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