| Commit message (Collapse) | Author | Age | Files | Lines |
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Bug fix
Description:
The MPI_File_set_size() routine on ASCI Red is not able to extend files
so that they are larger than 2GB.
Solution:
Add an extra macro which controls whether MPI_File_set_size() can handle
>2GB offsets or if our "older" way of reading a byte, then writing a byte at
the appropriate offset should be used.
Platforms tested:
FreeBSD 4.9 (sleipnir)
h5committest
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Bug fix
Description:
H5Dwrite was only checking the "top level" of the datatype to stop parallel
I/O on variable-length datatypes.
Solution:
Make checks "deeper".
Platforms tested:
FreeBSD 4.9 (sleipnir)
h5committest
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Clarify documentation about H5Tset_size for string datatypes.
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Description: test fixed-length strings in two ways: array of strings and
array of character.
Platforms tested: h5committest
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Code cleanup & optimization
Description:
Split superblock initialization and space allocation out from writing
the superblock information to disk, which makes the code much cleaner and
easier to understand and also allows FPHDF5 to have a fully completed superblock
to Bcast to other (non-caption) processes.
Platforms tested:
FreeBSD 4.9 (sleipnir)
too minor to require h5committest
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Update
Description:
The F_open and F_flush functions had a lot of cruft in them. The
F_flush was being used as a way to allocate the superblock. The
F_open had a bunch of code in there to read and serialize the
superblock.
Solution:
Moved these out into their own functions.
Platforms tested:
Modi4 (parallel, Fortran)
Copper (parallel, Fortran)
Verbena (Fortran, C++)
Sol (Fortran)
Misc. update:
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Code cleanup, etc.
Description:
Generalize Ray's datatype fixes to handle packing compound datatypes which
are the base type of an array or variable-length type, etc.
Also track "packedness" of a compound datatype from it's creation, instead
of only setting the 'packed' flag after the datatype was explicitly packed.
Updated docs to reflect that a compound datatype is allowed to grow (but
not shrink).
Platforms tested:
FreeBSD 4.9 (sleipnir)
h5committest
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Code cleanup
Description:
Patch up a few places where the metadata cache could ask for a read lock
instead of a write lock and other minor code cleanups.
Platforms tested:
FreeBSD 4.9 (sleipnir)
too minor to need h5committest
Misc. update:
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Fix incorrect # of 16-byte objects which fit into a 4096 byte global heap
collection (170 -> 127)
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Tweak some wording for global heap description.
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Description: H5Tpack fails if called twice or datatype is locked. Compound
datatype wasn't expandable.
Platforms tested: h5committest
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Update
Description:
Added extra parameter to the H5AC_protect() function that indicates
if the cache being asked for is going to be written to or just read
from. Those AC_protect calls that were H5AC_find calls are now
read-only. The rest are writes.
Platforms tested:
Linux (h5committest not needed due to size and small impact)
Misc. update:
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Bug fix.
Description:
Correct bug where a file opened twice, once with read-write permission
and once with read-only permission would cause closing the file with the
read-only file ID to fail because it was trying to flush information out
of the file.
Solution:
Check the permissions on file IDs that are being closed and only flush
when the particular file ID was opened with write permission.
Platforms tested:
FreeBSD 4.9 (sleipnir)
too small to need h5committest
Misc. update:
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Removal of H5AC_find()
Description:
The H5AC_find() function is mostly redundant and with the new
Flexible Parallel HDF5 stuff, we need to do locking on metadata
returned from the H5AC_find() anyway. So, all of the locking stuff
will be placed in the H5AC_{un}protect() functions. The H5AC_find()
is no longer needed.
Solution:
Replaced all H5AC_finds with H5AC_protects and H5AC_unprotects.
Platforms tested:
Linux (Fortran & C++)
Solaris (Fortran)
Irix (Parallel & Fortran)
Misc. update:
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Checkpoint file format spec.
Description:
Clarifications and cleanups related to file format review.
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Checkpoint file format spec.
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Add new VLTypes.html Tech Note
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Add document describing issues relating to variable-length datatypes.
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bug fix
Description:
The same h5detect bug also happens in this branch.
Solution:
remove h5detect.c from the windows source directory.
Platforms tested:
windows 2000
Misc. update:
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Code cleanup/bug fix
Description:
Move metadata cache calls around a bit so they protect the usage of the
metadata better.
Platforms tested:
FreeBSD 4.9 (sleipnir)
too small to need h5committest
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Fix, of a sort
Description:
Some of the code would get an object from the cache via the
H5AC_find() function and then modify the returned object. This
behavior is incorrect as the pointer returned via the H5AC_find()
function is supposed to be read only.
Solution:
Changed the H5AC_finds to H5AC_protect() instead and added the
appropriate H5AC_unprotect() function.
Platforms tested:
(simulated h5committest by hand since it doesn't work for me)
Linux (Fortran, C++)
Solaris (Fortran)
AIX (Fortran, C++)
SGI (Parallel, Fortran)
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Code cleanup
Description:
More de-linting
Platforms tested:
FreeBSD 4.9 (sleipnir)
Too small to need h5committest
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Bug fix
Description:
The VFL driver ID in a file's access proprty list wasn't being reference
counted correctly, causing the VFL driver to get prematurely closed after
several calls to "H5Pget_access_plist->H5Pclose".
Solution:
Increment VFL driver ID reference count when copy of file's access property
list is made in H5Pget_access_plist()
Platforms tested:
FreeBSD 4.9 (sleipnir)
h5committest
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Code cleanup
Description:
More de-linting...
Platforms tested:
FreeBSD 4.9 (sleipnir)
too small to need h5committest
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Code cleanup
Description:
Clear up a couple of minor issues with compiling the library with a C++
compiler.
Platforms tested:
FreeBSD 4.9 (sleipnir)
Too minor to require h5committest
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Code cleanup
Description:
More de-linting...
Platforms tested:
FreeBSD 4.9 (sleipnir)
too small to need h5committest
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Bug Fix and code cleanup
Description:
Correct error in H5T_detect_class that was causing nested compound datatypes
with to not detect the datatype class of fields correctly, which caused errors
with fill-values, variable-length datatypes and chunks later on.
Return the rank of the array datatype from H5Tget_array_dims(), like
H5Sget_dims().
Lots of cleanups to datatype code, to make the handling of arrays, compound
types, variable-length strings and sequences and enumerated types more
consistent and robust.
Platforms tested:
FreeBSD 4.9 (sleipnir)
h5committest
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Corrected typo in help string
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Code cleanup
Description:
De-linted more code.
Platforms tested:
FreeBSD 4.9 (sleipnir)
too small to need h5committest
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Purpose:
RM_H5G.html -- Minor copy edits
H5.intro.html -- Removed Library version # from doc title
Platforms tested:
IE 5, Safari
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Purpose:
Enhanced indexing; copy edits.
Description:
Restructured index and clarify descriptions and/or make them more
parallel; added link to "Other tools"
Added note that h4toh5 and h5toh4 are no longer part of the HDF5 library
distribution
Lots of copy edits
Platforms tested:
IE 5, Safari
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Code cleanup
Description:
De-linted more code
Platforms tested:
FreeBSD 4.8 (sleipnir)
too minor to need h5committest
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Bug fix
Description:
When datasets are deleted from a file, they are removed from the sieve
buffer, but instead of invalidating only the part of the sieve buffer affected,
the sieve buffer code would throw away the entire sieve buffer, potentially
including other raw data in the buffer that hadn't been written to disk yet.
Solution:
Improve the sieve buffer clearing code to handle partial invalidations.
Platforms tested:
FreeBSD 4.8 (sleipnir)
h5committest
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new feature
Description:
Added a new option of "setenvN" which does
set environment variable with $1 values
e.g., setenvN 3 x a b c is same as setenv x="a b c".
Platforms tested:
No h5committest. Tested by hand in copper.
Misc. update:
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Purpose:
bug
Description:
pablo failed to build properly
Solution:
make needed header files on the fly once again. also allowed for length of
hdf entry names to be 80 characters.
Platforms tested:
modi4, copper, arabica, verbena
Misc. update:
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Purpose:
Bug fix
Description:
pablo failed to build properly
Solution:
make needed header files on the fly once again.
Platforms tested:
modi4, copper, verbena, arabica
Misc. update:
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Purpose:
Bug fix
Description:
pablo build failed.
Solution:
Fixed the makefile so that the needed header files are again created on the
fly.
Platforms tested:
modi4, copper, verbena, arabica
Misc. update:
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updated.
Description:
Solution:
Platforms tested:
Misc. update:
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bug fix
Description:
h5diff would incur a segmentation fault in Alpha clusters when
the percentage option is used. This was due to memory aliagment
issue when the options variable is declared as a local variable
in main().
Moved the declaration to a global declaration.
Platforms tested:
"h5committested"
And tested at cluster QT of SNL.
Misc. update:
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Code cleanup
Description:
De-linted more code.
Platforms tested:
FreeBSD 4.8 (sleipnir)
too minor to need h5committest
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Code cleanup
Description:
Clean up some of the code for writing out dataspace and datatype
information.
Platforms tested:
FreeBSD 4.8 (sleipnir)
too small to need h5committest
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Checkpoint file format revisions
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Bug fix
Description:
H5Gget_objname_by_idx should allow NULL for the 'name' parameter, to allow
for querying for the name's length.
Solution:
Allow NULL for the 'name' parameter, the internal functions were already
ready to handle that case.
Clean up RM information about H5Gget_objname_by_idx and
H5Gget_objtype_by_idx also.
Platforms tested:
FreeBSD 4.8 (sleipnir)
h5committest
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Code cleanup
Description:
De-linted more modules
Platforms tested:
FreeBSD 4.8 (sleipnir) w/ & w/o stream enabled
too minor to require h5committest
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Bug fix.
Description:
Added MPE color definintions for the Stream-vfd API.
Platforms tested:
Tested in Copper since MPE only works there.
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Update release notes with bugfix info.
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Bug fix
Description:
Correct bug creating native versions of "complex" compound datatypes
on certain architectures (Sparc-Solaris) which require stricter alignment.
Also, correct bug where metadata (padding type, etc.) for strings was
incorrectly dropped.
Platforms tested:
FreeBSD 4.8 (sleipnir)
h5committest
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