summaryrefslogtreecommitdiffstats
Commit message (Collapse)AuthorAgeFilesLines
* [svn-r1115] Changes since 19990302Robb Matzke1999-03-0310-167/+364
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] Improvements for parallel library. If you have a properly working mpicc you should be able to just say: $ CC=mpicc ./configure and you will see checking for mpirun... /usr/local/mpi/bin/mpirun checking for parallel support files... skipped checking how to run on one processor... /usr/local/mpi/bin/mpirun -np 1 checking how to run in parallel... /usr/local/mpi/bin/mpirun -np $$NPROCS To quote from the INSTALL file.... *** Parallel vs. serial library The HDF5 library can be configured to use MPI and MPI-IO for parallelizm on a distributed multi-processor system. The easy way to do this is to have a properly installed parallel compiler (e.g., MPICH's mpicc or IBM's mpcc) and supply that executable as the value of the CC environment variable: [NOTE: mpcc is not tested yet] $ CC=mpcc ./configure $ CC=/usr/local/mpi/bin/mpicc ./configure If no such wrapper script is available then you must specify your normal C compiler along with the distribution of MPI/MPI-IO which is to be used (values other than `mpich' will be added at a later date): $ ./configure --enable-parallel=mpich If the MPI/MPI-IO include files and/or libraries cannot be found by the compiler then their directories must be given as arguments to CPPFLAGS and/or LDFLAGS: $ CPPFLAGS=-I/usr/local/mpi/include \ LDFLAGS=-L/usr/local/mpi/lib/LINUX/ch_p4 \ ./configure --enable-parallel=mpich If a parallel library is being built then configure attempts to determine how to run a parallel application on one processor and on many processors. If the compiler is mpicc and the user hasn't specified values for RUNSERIAL and RUNPARALLEL then configure chooses `mpirun' from the same directory as `mpicc': RUNSERIAL: /usr/local/mpi/bin/mpirun -np 1 RUNPARALLEL: /usr/local/mpi/bin/mpirun -np $${NPROCS:=2} The `$${NPROCS:=2}' will be substituted with the value of the NPROCS environment variable at the time `make check' is run (or the value 2). ./testpar/Makefile.in Saying `make check' (or `make test') will run the tests on two processors by default. If you define NPROCS then that many processors are used instead: $ NPROCS=4 make check ./configure.in Fixed (hopefully) bugs with detecting whether __attribute__ and __FUNCTION__ are special keywords for the compiler. ./Makefile.in Saying `make install' from the top level directory shows instructions for using shared libraries. ./config/commence.in ./src/Makefile.in ./test/Makefile.in ./testpar/Makefile.in ./tools/Makefile.in Moved the @top_srcdir@ into the makefiles because it was expanded too early and had the wrong value. ./INSTALL Added a warning that if the wrong version of hdf4 tools are installed then `make check' will fail in the tools directory.
* [svn-r1114] Purpose:Paul Harten1999-03-031-1/+1
| | | | | | | | | | | | | | | | | Bug fix Problem: On Solaris2.5, once the library has been compilied with any type of optimization, a bus error comes up in the "dtypes" test. Solution: The problem appears to be in the compilers' version of memcpy() that is used when optimized. Apparently, the same optimization problem is not associated with the similar function memmove(). So, as a solution to this problem, memmove() is substituted in for memcpy(). Platform tested: Solaris2.5
* [svn-r1113] SnapshotRobb Matzke1999-03-022-2/+2
|
* [svn-r1112] Changes since 19990301Robb Matzke1999-03-0229-849/+5946
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL Reorganized and added some additional examples. ./MANIFEST ./aclocal.m4 [NEW] ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./bin/ltconfig [NEW] ./bin/ltmain.sh [NEW] Added tests to determine how to compile shared libraries and how to link programs with them before the libraries are installed. Also how to install and uninstall shared libraries. The configure step also prints the names of the config files it's trying to load for easier debugging. ./bin/config.guess ./bin/config.sub Replaced with a newer version from GNU. The changes we made to that file to report `irix6.x' and `FreeBSD' without version numbers have been incorporated into configure.in instead. In the future, do not change these two files (see the top of configure.in instead). By the way, this update was required to get shared libraries working. ./config/linux [REMOVED] ./config/linux-gnulibc1 [NEW] ./config/linux-gnu [NEW] ./config/alpha-dec [REMOVED] ./config/alpha-dec-osf4.0 [REMOVED] ./config/dec-osf4.x [NEW] ./config/irix5.3 [REMOVED] ./config/irix5.x [NEW] ./config/irix64 [REMOVED] ./config/freebsd Moved config files around to agree with output from the new config.guess. The linux file was split into gnu (RedHat), gnulibc1, and gnulibc2 versions. The alpha-dec file was removed (I think it was unused) and the alpha-dec-osf4.0 was changed to dec-osf4.x. The irix5.3 file renamed to irix5.x and the irix64 file was renamed to irix6.x. The freebsd file was changed to point to linux-gnulibc1. These changes were tested on: Linux 2.0 Linux 2.1 FreeBSD 3.2 Irix 5.3 Irix64 6.2 Irix64 6.4 HP/UX 10.20 OSF1 4.0 ./config/alphaev56-dec-osf4.x ./config/irix64 Added warnings similar to linux/freebsd about using compilers with known bugs. ./config/commence.in ./config/conclude.in ./src/Makefile.in ./test/Makefile.in ./testpar/Makefile.in ./tools/Makefile.in Added definitions for shared libraries. This has been tested on the following systems: Linux 2.0 Linux 2.1 FreeBSD 3.2 Irix 5.3 Irix64 6.2 Irix64 6.4 HP/UX 10.20 static only OSF1 4.0 If you want to disable use of shared libraries (you probably do for development purposes since it takes a lot longer to compile and because you have to run dynamically linked programs in a special way if the library hasn't been installed) then add `--disable-shared' to the configure command line. This is all documented in the INSTALL file. ./bin/release Temprarily commented out the MANIFEST checking when running under svf since svf is about to be replaced by a newer version. This change only affects error checking during the release process. ./Makefile.dist ./Makefile.in Added `make check' which does the same thing as `make _test' since the former is endorsed by the GNU coding style and people are used to it. The old `make _test' still works too (and so does `make test' if you use GNU make).
* [svn-r1111] SnapshotRobb Matzke1999-03-022-2/+2
|
* [svn-r1110] Changes since 19990226Robb Matzke1999-03-0111-224/+293
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL Added instructions for using other compilers on Irix platforms. ./configure.in ./configure [REGENERATED] ./src/H5config.h.in [REGENERATED] ./src/H5private.h The presence of <sys/sysinfo.h> and <sys/proc.h> is only checked on DEC/Alpha because there are too many problems including these headers on other systems. ./config/irix6.x ./config/irix64 Removed `-ansi' and added a comment. Converting an ASCII UTC date and time to a time_t value is not defined by ANSI or Posix but is available if we don't use `-ansi'. This allows the dataset modification time messages to be read properly by H5Gget_objinfo(). ./src/H5Tconv.c Fixed a compiler warning. ./test/dtypes.c ./test/hyperslab.c ./test/istore.c Fixed compiler warnings in printf() statements.
* [svn-r1109] SnapshotRobb Matzke1999-02-262-2/+2
|
* [svn-r1108] Changes since 19990225Robb Matzke1999-02-2616-1127/+1298
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./INSTALL Added warnings and a disclaimer about GNU, DEC, Irix64, and NT compilers that generate incorrect machine code. ./configure.in ./src/H5private.h Detects and includes <sys/param.h> which is needed on FreeBSD before <sys/proc.h> even though we only really using anything from <sys/proc.h> on the DEC Alpha. ./config/irix64 Turned off warnings for duplicate definitions from the linker because -lnsl on irix has the same stuff in it as -lc. ./config/irix6.x Split up the CC and CFLAGS settings like with irix64 so that compilers besides `-n32' can be used. ./bin/snapshot The snapshots are tagged with names like hdf5-1_1_52 which is similar to the way the releases are tagged (cvs doesn't allow dots in tags). ./test/dtypes.c ./src/H5private.h ./src/H5Tconv.c Fixed some alignment violations on the DEC when using high optimization levels. The DEC incorrectly optimizes certain memcpy() and memmove() calls when the source argument is not word aligned if the call looks like it's copying an atomic data type. ./test/hyperslab Worked around code generation bugs in the Irix64 Mongoose 7.00 compiler by casting some `unsigned long' values to `unsigned' in an expression. ./src/H5Ocomp.c Fixed a place where %d was used to print a size_t.
* [svn-r1107] SnapshotRobb Matzke1999-02-262-2/+2
|
* [svn-r1106] Cleaned up a few compiler warnings, etc.Quincey Koziol1999-02-253-7/+7
|
* [svn-r1105] Removed flag which was stopping the HDF4 library from being ↵Quincey Koziol1999-02-251-1/+1
| | | | | | tested, now that I've rolled back the installed library on hawkwind to HDF4.1r2.
* [svn-r1104] Corrected a typo in the "ld warning suppress" which has a peculiarAlbert Cheng1999-02-251-1/+2
| | | | syntax.
* [svn-r1103] Purpose:Paul Harten1999-02-251-0/+1
| | | | | | | | | | | | | | | | | | | | | Bug fix Problem: This bug is coming up as a bus error on some machines (fuga, spank) in the "fillval" test. At higher levels of optimizations, H5detect gets rid of a statement which is to be used in alignment tests. Because of this, SIGBUS is never delivered, and the alignment constraints of the machine are not recorded correctly by H5detect in H5Tinit.c. Solution: By preventing the optimizer from getting rid of the statement to be used in the alignment tests, SIGBUS is delivered as expected, and the alignment constraints of the machine are recorded correctly. Platform tested: Irix6.5(fuga), HPUX10.20(spank), Solaris2.5(Kryten)
* [svn-r1102] SnapshotRobb Matzke1999-02-252-2/+2
|
* [svn-r1101] Changes since 19990219Robb Matzke1999-02-2529-585/+650
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./config/irix64 The old (-32) compiler is now supported by setting envrionment CC='cc -32'. The -64 compiler is the default or you can set CC='cc -64'. ./src/H5A.c ./src/H5D.c ./src/H5F.c ./src/H5Fistore.c ./src/H5Flow.c ./src/H5G.c ./src/H5I.c ./src/H5Ocomp.c ./src/H5P.c ./src/H5R.c ./src/H5RA.c ./src/H5T.c ./src/H5Tbit.c ./src/H5Tconv.c ./src/H5Z.c ./src/H5detect.c ./test/big.c ./test/cmpd_dset.c ./test/dsets.c ./test/dtypes.c ./test/enum.c ./test/mtime.c ./test/ohdr.c ./tools/h5ls.c Fixed lots of warnings on Irix64. Mailed a few remaining warnings in H5S to Quincey and a few in the dumper to Ruey-Hsia.
* [svn-r1100] SnapshotRobb Matzke1999-02-252-2/+2
|
* [svn-r1099] Patrick Lu1999-02-241-0/+0
| | | | added the alpha settings to the enum and enumdll projs
* [svn-r1098] SnapshotRobb Matzke1999-02-232-2/+2
|
* [svn-r1097] Added ./config/unicosmkRobb Matzke1999-02-233-449/+424
|
* [svn-r1096] SnapshotRobb Matzke1999-02-231-1/+1
|
* [svn-r1095] SnapshotRobb Matzke1999-02-231-1/+1
|
* [svn-r1094] Patrick Lu1999-02-221-0/+0
| | | | added the h5toh4 project into the zip
* [svn-r1093] Patrick Lu1999-02-221-0/+0
| | | | removed a file from the zip
* [svn-r1092] Patrick Lu1999-02-221-0/+0
| | | | added some test batch files, updated the config file and updated the project file
* [svn-r1091] SnapshotRobb Matzke1999-02-221-1/+1
|
* [svn-r1090] Patrick Lu1999-02-211-0/+0
| | | | | | fixed the H5Tinit.c so it had the correct endians. I must have been using the wrong H5Tinit.c file for the past few weeks. Also added a few comments to the h5config.h
* [svn-r1089] changed the call to open to HDopen since NT needs that 0_BINARY flagPatrick Lu1999-02-211-1/+1
| | | | in it to open binary files.
* [svn-r1088] SnapshotRobb Matzke1999-02-211-1/+1
|
* [svn-r1087] Changes since 19990218Robb Matzke1999-02-2021-1057/+1273
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5F.c ./src/H5private.h ./src/H5Ipublic.h ./src/H5O.c Fixed a rather nasty bug with file closing that caused the file boot block to be updated incorrectly, effectively truncating the file. The bug I fixed was triggered by: 1. Create a file, F 2. Open an object, X 3. Close file F 4. Reopen file F for read/write. 5. Create and close some objects 6. Close file F 7. Close library (exit). Step 3 pended the close because object X is still open, but the file ID was removed from the H5I_FILE ID group. Step 4 created a new file because it didn't see any matching file on the H5I_FILE ID group. Step 5 extends the file. Step 6 writes the new file boot block to disk. Step 7 closes object X and completes the close from step 3, writing the old boot block information to disk. The new behavior is that step 3 moves the file from the H5I_FILE group to the H5I_FILE_CLOSING group. Step 4 searches both groups and finds the file. Step 5 extends the file using the same H5F_file_t struct as step 3. Step 6 closes the H5F_t struct opened in step 3 but not the H5F_file_t struct shared by steps 1 and 3. Step 7 closes object X which closes the H5F_file_t from step 1, flushing the boot block which was shared by all steps. ./src/H5F.c Added some bulletproofing to file reference counting and removed comments which no longer apply. Added H5F_flush_all() and H5F_close_all() which apply to all files. ./src/H5A.c ./src/H5D.c ./src/H5F.c ./src/H5G.c ./src/H5I.c ./src/H5Iprivate.h ./src/H5R.c ./src/H5RA.c ./src/H5S.c ./src/H5T.c Added the new H5I_free_t data type to describe the function type to be passed as the `free_func' argument to H5I_init_group(). ./src/H5I.c Bulletproofed the object removal functions. Removed comments which no longer apply. Changed global variable names so they don't violate the naming scheme. Added H5I_debug() that prints the contents of an ID group. Removed H5I_inc_ref() because it isn't used. Reindented a couple of functions. ./src/H5.c ./src/H5G.c ./src/H5Ipublic.h Changed H5I_MAXID to H5I_NGROUPS to better relect the fact that it's the total number of valid ID groups. ./src/H5Shyper.c Changed hyperslab offset arrays to signed quantities to get rid of warnings on DEC cluster. ./src/H5Flow.c ./src/H5Fprivate.h Changed the objno argument of H5F_addr_pack() to be unsigned to get rid of warnings on DEC cluster.
* [svn-r1086] SnapshotRobb Matzke1999-02-201-1/+1
|
* [svn-r1085] Added platform T3E.Albert Cheng1999-02-192-0/+7
|
* [svn-r1084] Added configuration for platform T3E whose OS is called unicosmk.Albert Cheng1999-02-191-0/+138
|
* [svn-r1083] Purpose:Paul Harten1999-02-191-2/+6
| | | | | | | | | | | | | | | | | | Bug fix Problem: Currently, when --enable_preduction --disable-debug modes are selected during configure, the optimization level scheduled is -O (-O2). Unfortunately, this level of optimization relaxes too much the alignments necesary for the building, and testing of the hdf5 library. Solution: Lower the level of optimiztion to -O1. This still maintains required alignments. Platform tested: Irix6.5(fuga)
* [svn-r1082] SnapshotRobb Matzke1999-02-192-2/+2
|
* [svn-r1081] Changes since 19990218Robb Matzke1999-02-185-159/+183
| | | | | | | | | | | | | ---------------------- ./src/H5Shyper.c Changed hyperslab offset arrays to signed quantities to get rid of warnings on DEC cluster. ./src/H5Flow.c ./src/H5Fprivate.h Changed the objno argument of H5F_addr_pack() to be unsigned to get rid of warnings on DEC cluster.
* [svn-r1080] Disabled detection of hdf4 during the configuration because hawkwindRobb Matzke1999-02-181-1/+8
| | | | has old enough hdf4 libraries that the h5toh4 test always fails.
* [svn-r1079] SnapshotRobb Matzke1999-02-182-2/+2
|
* [svn-r1078] Changes since 19990215Robb Matzke1999-02-1829-778/+961
| | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | ---------------------- ./src/H5.c Fixed more dependency problems in H5_term_library(). There was a bug in the previous version that could cause the wrong EOF marker to be written to the boot block under certain circumstances. Hopefully this fixes it although I don't ready access to a test case (Mark Miller will test it). ./src/H5F.c ./src/H5Fprivate.h Added an H5F_close_all() that is similar to H5F_term_interface() but which doesn't close the interface. Files that don't have open object headers are closed, others are delayed until all object headers close. All files are flushed. ./src/H5ACprivate.h ./src/H5Bprivate.h ./src/H5Dprivate.h ./src/H5Eprivate.h ./src/H5Fprivate.h ./src/H5Gpkg.h ./src/H5Gprivate.h ./src/H5Gpublic.h ./src/H5HGprivate.h ./src/H5HLprivate.h ./src/H5Iprivate.h ./src/H5MFprivate.h ./src/H5MMprivate.h ./src/H5Oprivate.h ./src/H5Pprivate.h ./src/H5Ppublic.h ./src/H5RAprivate.h ./src/H5Sprivate.h ./src/H5Spublic.h ./src/H5Tpkg.h ./src/H5Tprivate.h ./src/H5Tpublic.h ./src/H5Vprivate.h ./src/H5Zprivate.h ./src/H5private.h ./src/H5public.h Reindented after __DLL__ was added.
* [svn-r1077] Removed -*- makefile -*-Robb Matzke1999-02-181-1/+1
|
* [svn-r1076] SnapshotRobb Matzke1999-02-182-2/+2
|
* [svn-r1075] Fixed a typo of a missing ;Albert Cheng1999-02-171-1/+1
|
* [svn-r1074] Purpose:Paul Harten1999-02-171-9/+9
| | | | | | | | | | | | | | | Bug Fixes Problem: Warnings given during compilation on some machines. Solution: Take care of various Compiler Warnings such as: 1) uninitialized variables; 2) unreachable statements. Platforms tested: Solaris2.5, Linux, Irix6.5
* [svn-r1073] Updated with recent changes.Albert Cheng1999-02-171-0/+3
|
* [svn-r1072] SnapshotRobb Matzke1999-02-172-2/+2
|
* [svn-r1071] Moved the MPI test to a file of its own (t_mpi.c) for future ↵Albert Cheng1999-02-176-257/+259
| | | | | | | | | addition of other MPI tests. Changed return code tests from comparing with FAIL to with 0. Updated MANIFEST for the addition of a new file. Tested in O2k.
* [svn-r1070] Updated to do auto-configuration for parallel tests (testpar)Albert Cheng1999-02-163-16/+39
| | | | | too. Also used mpi function calls to test mpi libraries. Tested on O2K platform.
* [svn-r1069] SnapshotRobb Matzke1999-02-162-2/+2
|
* [svn-r1068] Completed the previous to do auto-configure for parallel tests too.Albert Cheng1999-02-151-7/+6
| | | | | | Also removed the pre-defined "USE_PAUSE" since it should be invoked only in individual cases, rather than as defaults. Tested in O2K.
* [svn-r1067] fixed a problem with the enumdll proj(release)Patrick Lu1999-02-151-0/+0
|
* [svn-r1066] added 3 new projects into the file. enum, enumdll and h5toh4.Patrick Lu1999-02-151-0/+0
| | | | | currently the h5toh4 is not included in the all project since it has some compilation problems.
generated by cgit v0.12 at 2024-11-10 12:37:42 (GMT)